BAC Information

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BAC

Clone NameB6Ng01-087K23
ChromosomeX (Build37)
Map Location 25,840,886 - 25,941,523
singlet/doubletdoublet
Overlap geneLOC100039078, LOC100039003
Upstream geneLOC100038977, LOC100038997, LOC664810, EG382275, LOC100039030, LOC100039065
Downstream geneSlx, LOC100039120, LOC619914, LOC100039039, LOC619991, LOC664844, LOC100042154, EG664861, LOC664866, LOC100042175, LOC100039194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087K23.bB6Ng01-087K23.g
ACCDH900740DH900741
length1,1081,033
definitionDH900740|Mus musculus domesticus DNA, BAC clone: B6Ng01-087K23, 5' end.DH900741|Mus musculus domesticus DNA, BAC clone: B6Ng01-087K23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,840,886 - 25,841,746)(25,940,491 - 25,941,523)
sequence
gaattcaacatatattgagttagttctttgaaactctggtagaattctgt
gttaaattgaattgaccattgactttttagttatttatttgtttgggaga
tttttaatgcctgtttctatttctttagtgttactgggccgtgtaaagtg
tttatgtgtaattgatttaacattcataattggtatcttctagaaaactc
ttttttcgttaagattttccaattttgcagagtacaggattttttttctt
tttagatattttctttatttacatttcaaatgctatcctgaaagttccct
ataccctccccctgccctgctcccctacccacccactccctcttcttggc
cctggtgttcccctgtactggggcatataaagtgtataagaccaaggggc
cttatgcaatagtgtctgagtttggtggcagattataggatggaagcccg
gttggggtagtctctggatggtccatcctttcatcttagctccaaacttt
gcctctgtacctccttcattgggtaatttgttccttattctaaggaggaa
tgaataatccacactttggtcttcctttttcatgattttcttgtgttttg
caaattatatcttggctattgtaagtttcttggttaatatccacttatca
gtgagtgcatgtgaagtgacttctattgttattgggttacctcactcagg
atgatatcctccaactccattcatttgcctaaaaatttcataaattcatt
gttttttttcagtgattaaacatttattagagaaaattagtaagcaggtc
ccagagtgtggtgaactcagagtcaccccagccctgtgtgctaatacgca
tacttcagttacatgttgcacaaaattacccaagcaaatgcaacagtatc
ttaagacaactgtaaacagtttaccaaatagtgtgaattataaggagagg
aacaccccctctgagtattttaggcagttttcatataccgaatagcacta
aaaccaacagtaaagaatttctatcacccaggtcttagatgacaagaaca
gcttcaaatgtttctagtagctgcttgggacgtggcctttctgagaagtg
ctacctat
gaattccaaggtaaatgctgatacacaatgccatattgaggtaagtgttg
ttatctgacactggatagaaaattgatgattgagatcctacccaccacag
gaagttctgttgatgtccctgatgcattcatgtatctcctgatgtgaaac
atgtatggtatttccattattatgattctacatgtaaaaaaaaaaagaaa
actatgttgatgccagtgatgtatgctgtgaccagcaattttgagggagt
ccatgtttgattatattcctattgctaatggaaaccctagtggtgtctat
gatctctgctactgcttgaaaatataatgaacctcaaggtccacaataat
gcccaagtttattttgagggaagtattcttatctggttctggagatcaga
ttaaaatctggaaacctacctgcaacaggatcatcagttggtatttctca
tgtatgtgtatagctcacaatatctaacatgtgataaatattgataattg
tgatcctgctggaaacctgaagctattttgaagtcagtgatgcagctatg
accagcaatcatggtggggtcttttattcctgttgctaattgagaccctg
gtgatggttatgatctgtgttgtttctttagaacctgatgaattcaaagg
cccatagtgaaatgataggttatattgaggtaagtgttctcagtaatgga
gatcagattgatatctaacatcctaatagccactacaaattctgatgtca
ctgatacatgaatacattgcatgatgttgactaagtaatgtgcaagatcc
ttactgccatctgaaataatgtgaatatcagtgatttatcctgcactaaa
tgaggcaattatgacaatgatttattctgccctgtgaattgaggttgatg
tcattgatatataactgtcttcacaccccatgggattgccctaggtccat
gctaccattcgcaacctggttgccagtgatccctgctgtccctgggtacc
atgtaatatcattatttacgtagttcctgtaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_25840886_25841746
seq2: B6Ng01-087K23.b_302_1153

seq1  TATTTTCTTTATTTACATTTCAAATGCTATCCTGAAAGTTCCCTATACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTTTATTTACATTTCAAATGCTATCCTGAAAGTTCCCTATACCC  50

seq1  TCCCCCTGCCCTGCTCCCCTACCCACCCACTCCCTCTTCTTGGCCCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTGCCCTGCTCCCCTACCCACCCACTCCCTCTTCTTGGCCCTGGT  100

seq1  GTTCCCCTGTACTGGGGCATATAAAGTGTATAAGACCAAGGGGCCTTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCCTGTACTGGGGCATATAAAGTGTATAAGACCAAGGGGCCTTATG  150

seq1  CAATAGTGTCTGAGTTTGGTGGCAGATTATAGGATGGAAGCCCGGTTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTGTCTGAGTTTGGTGGCAGATTATAGGATGGAAGCCCGGTTGGG  200

seq1  GTAGTCTCTGGATGGTCCATCCTTTCATCTTAGCTCCAAACTTTGCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTCTGGATGGTCCATCCTTTCATCTTAGCTCCAAACTTTGCCTCT  250

seq1  GTACCTCCTTCATTGGGTAATTTGTTCCTTATTCTAAGGAGGAATGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTCCTTCATTGGGTAATTTGTTCCTTATTCTAAGGAGGAATGAATA  300

seq1  ATCCACACTTTGGTCTTCCTTTTTCATGATTTTCTTGTGTTTTGCAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACACTTTGGTCTTCCTTTTTCATGATTTTCTTGTGTTTTGCAAATT  350

seq1  ATATCTTGGCTATTGTAAGTTTCTTGGTTAATATCCACTTATCAGTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTGGCTATTGTAAGTTTCTTGGTTAATATCCACTTATCAGTGAGT  400

seq1  GCATGTGAAGTGACTTCTATTGTTATTGGGTTACCTCACTCAGGATGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGAAGTGACTTCTATTGTTATTGGGTTACCTCACTCAGGATGATA  450

seq1  TCCTCCAACTCCATTCATTTGCCTAAAAATTTCATAAATTCATTGTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAACTCCATTCATTTGCCTAAAAATTTCATAAATTCATTGTTTTT  500

seq1  TTTCAGTGATTAAACATTTATTAGAGAAAATTAGTAAGCAGGTCCCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGATTAAACATTTATTAGAGAAAATTAGTAAGCAGGTCCCAGAG  550

seq1  TGTGGTGAACTCAGAGTCACCCCAGCCCTGTGTGCTAATACGCATACTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGAACTCAGAGTCACCCCAGCCCTGTGTGCTAATACGCATACTTC  600

seq1  AGTTACATGTTGCACAAAATTACCCAAGCAAATGCAACAGTATCTTAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACATGTTGCACAAAATTACCCAAGCAAATGCAACAGTATCTTAAGA  650

seq1  CAACTGTAAACAGTTTACCAAATAGTGTGAATTATAAGGGAGAGGAACAC  700
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAACTGTAAACAGTTTACCAAATAGTGTGAATTATAA-GGAGAGGAACAC  699

seq1  CCCCTCTGAGTATTTTAGGCAGTTTTCATATACCGAATAGCACTAAAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTGAGTATTTTAGGCAGTTTTCATATACCGAATAGCACTAAAACC  749

seq1  AACAGTAAAGAATTTCTAATCACCCAGGTCTTAAGATGACAAGGAACAGC  800
      ||||||||||||||||| |||||||||||||| ||||||||| |||||||
seq2  AACAGTAAAGAATTTCT-ATCACCCAGGTCTT-AGATGACAA-GAACAGC  796

seq1  TTCCAAAATGTTTCTAGTAGCTGCTTTGGGACTGTGGCCTTTCTGAGTAA  850
      |||  ||||||||||||||||||| ||||||| |||||||||||||| ||
seq2  TTC--AAATGTTTCTAGTAGCTGC-TTGGGAC-GTGGCCTTTCTGAG-AA  841

seq1  GTGCTACCTAT  861
      |||||||||||
seq2  GTGCTACCTAT  852

seq1: chrX_25940491_25941523
seq2: B6Ng01-087K23.g_69_1100 (reverse)

seq1  CTACAGGAACTACGT-AATAATGATATTAACATGGTAACCAGGGACAGCA  49
      ||||||||||||||| |||||||||||| |||||||| ||||||||||||
seq2  CTACAGGAACTACGTAAATAATGATATT-ACATGGTACCCAGGGACAGCA  49

seq1  GGGATCACTGGCAACCAGGTTGCGAATGGTAGCATGGACCTAGGGCAATC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCACTGGCAACCAGGTTGCGAATGGTAGCATGGACCTAGGGCAATC  99

seq1  CCATGGGGTGTGAAGACAGTTATATATCAATGACATCAACCTCAATTCAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGGTGTGAAGACAGTTATATATCAATGACATCAACCTCAATTCAC  149

seq1  AGGGCAGAATAAATCATTGTCATAATTGCCTCATTTAGTTGCAGGATAAA  199
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGGGCAGAATAAATCATTGTCATAATTGCCTCATTTAG-TGCAGGATAAA  198

seq1  TCACTGATATTCACATTATTTCAGATGGCAGTAAGGATCTTGCACATTAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGATATTCACATTATTTCAGATGGCAGTAAGGATCTTGCACATTAC  248

seq1  TTAGTCAACATCATGCAATGTATTCATGTATCAGTGACATCAGAATTTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCAACATCATGCAATGTATTCATGTATCAGTGACATCAGAATTTGT  298

seq1  AGTGGCTATTAGGATGTTAGATATCAATCTGATCTCCATTACTGAGAACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTATTAGGATGTTAGATATCAATCTGATCTCCATTACTGAGAACA  348

seq1  CTTACCTCAATATAACCTATCATTTCACTATGGGCCTTTGAATTCATCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTCAATATAACCTATCATTTCACTATGGGCCTTTGAATTCATCAG  398

seq1  GTTCTAAAGAAACAACACAGATCATAACCATCACCAGGGTCTCAATTAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAAAGAAACAACACAGATCATAACCATCACCAGGGTCTCAATTAGC  448

seq1  AACAGGAATAAAAGACCCCACCATGATTGCTGGTCATAGCTGCATCACTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAATAAAAGACCCCACCATGATTGCTGGTCATAGCTGCATCACTG  498

seq1  ACTTCAAAATAGCTTCAGGTTTCCAGCAGGATCACAATTATCAATATTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAAATAGCTTCAGGTTTCCAGCAGGATCACAATTATCAATATTTA  548

seq1  TCACATGTTAGATATTGTGAGCTATACACATACATGAGAAATACCAACTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGTTAGATATTGTGAGCTATACACATACATGAGAAATACCAACTG  598

seq1  ATGATCCTGTTGCAGGTAGGTTTCCAGATTTTAATCTGATCTCCAGAACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCCTGTTGCAGGTAGGTTTCCAGATTTTAATCTGATCTCCAGAACC  648

seq1  AGATAAGAATACTTCCCTCAAAATAAACTTGGGCATTATTGTGGACCTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGAATACTTCCCTCAAAATAAACTTGGGCATTATTGTGGACCTTG  698

seq1  AGGTTCATTATATTTTCAAGCAGTAGCAGAGATCATAGACACCACTAGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCATTATATTTTCAAGCAGTAGCAGAGATCATAGACACCACTAGGG  748

seq1  TTTCCATTAGCAATAGGAATATAATCAAACATGGACTCCCTCAAAATTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTAGCAATAGGAATATAATCAAACATGGACTCCCTCAAAATTGC  798

seq1  TGGTCACAGCATACATCACTGGCATCAACATAGTTTTCTTTTTTTTTTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACAGCATACATCACTGGCATCAACATAGTTTTCTTTTTTTTTTTA  848

seq1  CATGTAGAATCATAATAATGGAAATACCATACATGTTTCACATCAGGAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGAATCATAATAATGGAAATACCATACATGTTTCACATCAGGAGA  898

seq1  TACATGAATGCATCAGGGACATCAACAGAACTTCCTGTGGTGGGTAGGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAATGCATCAGGGACATCAACAGAACTTCCTGTGGTGGGTAGGAT  948

seq1  CTCAATCATCAATTTTCTATCCAGTGTCAGATAACAACACTTACCTCAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATCATCAATTTTCTATCCAGTGTCAGATAACAACACTTACCTCAAT  998

seq1  ATGGCATTGTGTATCAGCATTTACCTTGGAATTC  1033
      ||||||||||||||||||||||||||||||||||
seq2  ATGGCATTGTGTATCAGCATTTACCTTGGAATTC  1032