BAC Information

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BAC

Clone NameB6Ng01-087P17
ChromosomeX (Build37)
Map Location 162,466,125 - 162,575,897
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC627045, Glra2, LOC100040753
Downstream geneGemin8, Gpm6b, Ofd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912, LOC641660, LOC667791, EG667794, LOC100040850, LOC627268
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087P17.bB6Ng01-087P17.g
ACCDH900960DH900961
length1,0961,068
definitionDH900960|Mus musculus domesticus DNA, BAC clone: B6Ng01-087P17, 5' end.DH900961|Mus musculus domesticus DNA, BAC clone: B6Ng01-087P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,466,125 - 162,467,232)(162,574,807 - 162,575,897)
sequence
gaattctctaaggtcttgaaatttcattaattttggaattgagaattatg
cagatcattcaaaacagttactgcccaagatcatgtataagttgttttta
ttttaattcttgataatctatttttattaattcttgagaatttcatatac
tacattttaatcatattcactccccactcctcccttagttcctctcagat
tcatcccttttttctttcttccctcacaattagcccttcctacatagcaa
attcaaggtcagcctggcctatgggaaacctggtctcataaagtttttac
tacgaagtgaaaaacaaacagaattaagaagccttcttcataaacattgc
ccaacttcataatgttcactggtgatgtctacctagttcactcaaacttt
aattctgatttaaaaaataataataataaggtcccactcagcctctgagt
atggccttgataaaagtggcctcttcagttctgatttccctgtggttctt
gatgccaacagaagcttaagccattgtatataacttgaagagaggagaag
tggtaaggaaggagataacctaaagaaataaggtattgaacttattgctg
aagcatttagaaacaccaagctccactatctctcaaagtcagaatgatac
acacatagacttaaactctcaggagtaaacagattggggatgcacggaaa
acaaacgcagagaagacttgacttccactagtatcctcagtgtccttgag
gctaaagatgaaaactttcggaatacccacagaagacagaaatatcaaac
aaagtcggctattcacacaggagagaacagtgcaaaagaaaactcccaac
aaccttaaaagcacactatgaggtaagtccttgcccagagcattgttttt
tataccacattttttcagccaagaaaatgattctgaccaccacactgcca
aaataataccattgattcccaactacctgaatactcttatctttcaagtc
agatgctgaactttgactcttggtactccctccctctcagtgggtaaact
gccccacactgagcaacagttcaagtagaaacagcttatttggtct
gaattccaagattgttactgtttgattccacttttagaaacttcaagaat
cagaaagagctacaatagaaattagaacagggcagaaatggaattgaagg
agacaacaagcatctttgttgggggtgaaggaattcttggattcaggtag
agtttgttcatgcatatatgccatatatatatatatatatatcacagttt
attaaattatacaggaaaccataagctaaaatgtaaaccacactgaagtt
gaatgcttcttcttggaaatgcccatgttttccaagttgtcacaaatgaa
catatatatttattggataagtgaaactcactttaaagtaataaatattt
ttgttgtttgagctagtgaggcaacctatttttaataatttggtcattta
caaatttatttctaacaaggtcacattttccctggatgtacttagtggtc
taacatgtatttgcatgctggttacatggcatttcaatgttcaaagaaat
tatggcatttatgtggctggaaagtaacttagaaaaataaactggcctag
aagattcacactgtagtgttcaggagcaatagttacttcattttcttatg
atctatatctaaggatagaacctcaccacttcctttacctgatctcaata
cttttaaaatacttttattatttaaaacaattttaaaatttaaataaatt
ttgatcaaattcttcccttccccaagttcttccagatcccctcctcttcc
ctactcacccaacttctcaaaacaaaacaaaacaaaacaaaataaaacaa
accaatgacaaacaaaaccctaataaaacaacaacctccctttaagaaaa
caaagaaacaagtaaaacaacccctccaaatctaacaaccaaaccaagct
atactaaataaagccaccaccacaccacacacccaccaccccacaccaaa
aaacccaaaaactgtgactccattatatgttagtcactattcctgaacat
agctgttcctacagtggtggtataccagtgttactccattggaaaaatga
tttttccctttccagcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_162466125_162467232
seq2: B6Ng01-087P17.b_47_1142

seq1  GAATTCTCTAAGGTCTTGAAATTTCATTAATTTTGGAATTGAGAATTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAGGTCTTGAAATTTCATTAATTTTGGAATTGAGAATTATG  50

seq1  CAGATCATTCAAAACAGTTACTGCCCAAGATCATGTATAAGTTGTTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCATTCAAAACAGTTACTGCCCAAGATCATGTATAAGTTGTTTTTA  100

seq1  TTTTAATTCTTGATAATCTATTTTTATTAATTCTTGAGAATTTCATATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTCTTGATAATCTATTTTTATTAATTCTTGAGAATTTCATATAC  150

seq1  TACATTTTAATCATATTCACTCCCCACTCCTCCCTTAGTTCCTCTCAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTAATCATATTCACTCCCCACTCCTCCCTTAGTTCCTCTCAGAT  200

seq1  TCATCCCTTTTTTCTTTCTTCCCTCACAATTAGCCCTTCCTACATAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCTTTTTTCTTTCTTCCCTCACAATTAGCCCTTCCTACATAGCAA  250

seq1  ATTCAAGGTCAGCCTGGCCTATGGGAAACCTGGTCTCATAAAGTTTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGGTCAGCCTGGCCTATGGGAAACCTGGTCTCATAAAGTTTTTAC  300

seq1  TACGAAGTGAAAAACAAACAGAATTAAGAAGCCTTCTTCATAAACATTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAAGTGAAAAACAAACAGAATTAAGAAGCCTTCTTCATAAACATTGC  350

seq1  CCAACTTCATAATGTTCACTGGTGATGTCTACCTAGTTCACTCAAACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTCATAATGTTCACTGGTGATGTCTACCTAGTTCACTCAAACTTT  400

seq1  AATTCTGATTTAAAAAATAATAATAATAAGGTCCCACTCAGCCTCTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGATTTAAAAAATAATAATAATAAGGTCCCACTCAGCCTCTGAGT  450

seq1  ATGGCCTTGATAAAAGTGGCCTCTTCAGTTCTGATTTCCCTGTGGTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTTGATAAAAGTGGCCTCTTCAGTTCTGATTTCCCTGTGGTTCTT  500

seq1  GATGCCAACAGAAGCTTAAGCCATTGTATATAACTTGAAGAGAGGAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCAACAGAAGCTTAAGCCATTGTATATAACTTGAAGAGAGGAGAAG  550

seq1  TGGTAAGGAAGGAGATAACCTAAAGAAATAAGGTATTGAACTTATTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGGAAGGAGATAACCTAAAGAAATAAGGTATTGAACTTATTGCTG  600

seq1  AAGCATTTAGAAACACCAAGCTCCACTATCTCTCAAAGTCAGAATGATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTAGAAACACCAAGCTCCACTATCTCTCAAAGTCAGAATGATAC  650

seq1  ACACATAGACTTAAACTCTCAGGAGTAAACAGATTGGGGATGCACGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAGACTTAAACTCTCAGGAGTAAACAGATTGGGGATGCACGGAAA  700

seq1  ACAAACGCAGAGAAGACTTGACTTCCACTAGTATCCTCAGTGTCCTTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACGCAGAGAAGACTTGACTTCCACTAGTATCCTCAGTGTCCTTGAG  750

seq1  GCTAAAGATGAAAACTTTCGGAATACCCACAGAAGACAGAAATATCAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGATGAAAACTTTCGGAATACCCACAGAAGACAGAAATATCAAAC  800

seq1  AAAGTCGGCTATTCACACAGGAGAGAACAGTGCAAAAGAAAACTCCCAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCGGCTATTCACACAGGAGAGAACAGTGCAAAAGAAAACTCCCAAC  850

seq1  AACCTTAAAAGCACACTATGAGGTAAGTCCTTGCCCAGAGCATTGTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTAAAAGCACACTATGAGGTAAGTCCTTGCCCAGAGCATTGTTTTT  900

seq1  TATACCACATTTTTTCAGCCAAGAAAAATGATTCTGACCACCACACTGCC  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TATACCACATTTTTTCAGCCAAG-AAAATGATTCTGACCACCACACTGCC  949

seq1  AAAATAATACCATTGATTCCCAACTACCTGAATACTCTTATCTTTCAAAG  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAAATAATACCATTGATTCCCAACTACCTGAATACTCTTATCTTTC-AAG  998

seq1  TCAGAATGCTGAACTTTGAACTCTTGGTACTCCCTCCCTCTCAGTGGGTA  1050
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCAG-ATGCTGAACTTTG-ACTCTTGGTACTCCCTCCCTCTCAGTGGGTA  1046

seq1  AACCTGCCCCACAACTGAGGCAAACAGGTTTCAAAGTAAGAAACAGCTTA  1100
      || ||||||||| ||||||   |||||  ||| |||| ||||||||||||
seq2  AA-CTGCCCCAC-ACTGAG--CAACAG--TTC-AAGT-AGAAACAGCTTA  1088

seq1  TTTGGTCT  1108
      ||||||||
seq2  TTTGGTCT  1096

seq1: chrX_162574807_162575897
seq2: B6Ng01-087P17.g_69_1136 (reverse)

seq1  CTGCTGGAAAAGGGAAAAATCATTTTTTCCAATGGAGTAACACTGGGTAT  50
      ||||||| |||||||||||||| ||||||||||||||||||||| |||||
seq2  CTGCTGG-AAAGGGAAAAATCA-TTTTTCCAATGGAGTAACACT-GGTAT  47

seq1  ACCAACCACTGTAGGACAGGCCTTATGTTCAGGAATAGTTGACTAACATA  100
      ||| ||||||||||||   ||  ||||||||||||||| |||||||||||
seq2  ACC-ACCACTGTAGGAACAGC--TATGTTCAGGAATAG-TGACTAACATA  93

seq1  TAATGGAGTCCACAGTTTTTTGGGGTTTTTTTGGTTGTGTGTGTGTGTGT  150
      ||||||||| ||||||||||  ||||||||    | ||||| | ||| ||
seq2  TAATGGAGT-CACAGTTTTT--GGGTTTTT----TGGTGTG-GGGTG-GT  134

seq1  GTGTGTGTGTGTGTGTGTGTGTGCTTTTATTTAGTTATAGCTTGGTTTGG  200
      | ||||||| ||||| ||| |||  ||||||||| |||||||||||||||
seq2  GGGTGTGTG-GTGTG-GTG-GTGGCTTTATTTAG-TATAGCTTGGTTTGG  180

seq1  TTGTTAGATTTTGGAGGGGTTGTTTTACTTTGTTTTCTTTGTTTTCTTAA  250
      |||||||| |||||||||||||||||||||   |||||||||||||||||
seq2  TTGTTAGA-TTTGGAGGGGTTGTTTTACTT--GTTTCTTTGTTTTCTTAA  227

seq1  AGGGAGGTTGTTGTTTTATTAGGGTTTTGTTTGTCATTGGTTTGTTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGTTGTTGTTTTATTAGGGTTTTGTTTGTCATTGGTTTGTTTTAT  277

seq1  TTTGTTTTGTTTTGTTTTGTTTTGAGAAGTTGGGTGAGTAGGGAAGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTGTTTTGTTTTGAGAAGTTGGGTGAGTAGGGAAGAGGA  327

seq1  GGGGATCTGGAAGAACTTGGGGAAGGGAAGAATTTGATCAAAATTTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATCTGGAAGAACTTGGGGAAGGGAAGAATTTGATCAAAATTTATTT  377

seq1  AAATTTTAAAATTGTTTTAAATAATAAAAGTATTTTAAAAGTATTGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAAAATTGTTTTAAATAATAAAAGTATTTTAAAAGTATTGAGAT  427

seq1  CAGGTAAAGGAAGTGGTGAGGTTCTATCCTTAGATATAGATCATAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAAGGAAGTGGTGAGGTTCTATCCTTAGATATAGATCATAAGAAA  477

seq1  ATGAAGTAACTATTGCTCCTGAACACTACAGTGTGAATCTTCTAGGCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTAACTATTGCTCCTGAACACTACAGTGTGAATCTTCTAGGCCAG  527

seq1  TTTATTTTTCTAAGTTACTTTCCAGCCACATAAATGCCATAATTTCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTCTAAGTTACTTTCCAGCCACATAAATGCCATAATTTCTTTG  577

seq1  AACATTGAAATGCCATGTAACCAGCATGCAAATACATGTTAGACCACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGAAATGCCATGTAACCAGCATGCAAATACATGTTAGACCACTAA  627

seq1  GTACATCCAGGGAAAATGTGACCTTGTTAGAAATAAATTTGTAAATGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCCAGGGAAAATGTGACCTTGTTAGAAATAAATTTGTAAATGACC  677

seq1  AAATTATTAAAAATAGGTTGCCTCACTAGCTCAAACAACAAAAATATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTAAAAATAGGTTGCCTCACTAGCTCAAACAACAAAAATATTTA  727

seq1  TTACTTTAAAGTGAGTTTCACTTATCCAATAAATATATATGTTCATTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTAAAGTGAGTTTCACTTATCCAATAAATATATATGTTCATTTGT  777

seq1  GACAACTTGGAAAACATGGGCATTTCCAAGAAGAAGCATTCAACTTCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTTGGAAAACATGGGCATTTCCAAGAAGAAGCATTCAACTTCAGT  827

seq1  GTGGTTTACATTTTAGCTTATGGTTTCCTGTATAATTTAATAAACTGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTACATTTTAGCTTATGGTTTCCTGTATAATTTAATAAACTGTGA  877

seq1  TATATATATATATATATATGGCATATATGCATGAACAAACTCTACCTGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATGGCATATATGCATGAACAAACTCTACCTGAA  927

seq1  TCCAAGAATTCCTTCACCCCCAACAAAGATGCTTGTTGTCTCCTTCAATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAATTCCTTCACCCCCAACAAAGATGCTTGTTGTCTCCTTCAATT  977

seq1  CCATTTCTGCCCTGTTCTAATTTCTATTGTAGCTCTTTCTGATTCTTGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTGCCCTGTTCTAATTTCTATTGTAGCTCTTTCTGATTCTTGAA  1027

seq1  GTTTCTAAAAGTGGAATCAAACAGTAACAATCTTGGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAAAAGTGGAATCAAACAGTAACAATCTTGGAATTC  1068