BAC Information

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BAC

Clone NameB6Ng01-088G17
ChromosomeX (Build37)
Map Location 151,642,130 - 151,643,299
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC270665, LOC100040076, 4930524N10Rik, EG434879, LOC667313, 4930542N07Rik, EG434881, LOC100040899, LOC667331, LOC100040925, LOC100040937, Magea6, Magea3, LOC626034, Magea8, Magea2, Magea5, Magea1, 1700042B14Rik, LOC245676, Amd-ps1, LOC667369
Downstream geneSat1, Acot9, LOC667383, Prdx4, LOC667394, Ptchd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088G17.bB6Ng01-088G17.g
ACCDH901274DH901275
length1,176965
definitionDH901274|Mus musculus domesticus DNA, BAC clone: B6Ng01-088G17, 5' end.DH901275|Mus musculus domesticus DNA, BAC clone: B6Ng01-088G17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacagctttctattttgataatgtcagaggcacagcagggagagc
cttttcaatggaggctctgagtggggccattcactccaggattgcggagg
gtgggttccatcaacagtgccgcctttcacctggtactcaactgctttca
tctagcaaatccaaaacaaaaatagtttcacaacagccaaatcagcgagt
gtatggacatatgcctatgatgctctggaaactacagtaagaagatctat
agttaaaggccagttgaggtaacatggaaagattccactgcaacaagcaa
acaaacaaacgaattacaaaagcaaacaaacaaaaacagtggtaacgtct
gaaacaaatgtaaaaggcagctaaatgaattagtccctttttctggcaaa
gagacatagtccagaagcactttgggtctggtgaatatttgactttgtgt
caaacaaatttaaactagatcctggctctttatggtaataaaaataaact
tcattgaacttttgagatgactccagacgttaaggcacttgccacacagc
ctgacaacctcagttgtatccctgggaccccactcaggggaaggagagaa
tcaactcccacaagttgtctgtgctctgccacacacacacacacacacac
acacacacacacacgtaaacttttaaaatttctgaaactaaaaataaatt
gctagagttcctgtgataattaaatgagaacatgaattcagaatgcatat
tactactatattttttatcacttctctttcctttcttccttccttcttta
ggacagggttctgtatattccaggttggccttggacttgttatgtagctt
tagatgatcatggttaaatcacctgcattgactcctggaagcctccccta
tcccaggtctctgggacttcctagagatttcccctactccccaaccccta
ctccctggcagctgcagatttccagtcattctcctggccctttggggttt
ctctcctgtcctctctccaccacctgatcttactccccaatctcctcctc
atcagctttcccaccccacttccttcctagtttgcctctttctgaactat
ttttattccccccttctaagtaagatcatgcaatcttgccttgccccttt
ccttcctgtttagcttctttgggttt
gaattctctgccctaccttaaccacttgttgacatgtgaaaaggaacaaa
aaggcttctaacactggagaaagttcaaggccagacatccctcgtaaagc
tgtaatgtcccgcagttctggttcgcgaacgagggatctcccttgcgcca
gtgtgatggtagttcccgggttcctcggcgccacttattgcccgagcttt
tgtccccaccggcaagaacacactcaggaaaaacggaatcttctgcggca
aagcttttattgcttacttatcaggagggaagaccccaaaccgggaaaat
ggcgctgcttatatagcccgaagcgtgacgtttcatcacctgatgtggcc
tgacagctcctgatttcttgctcgcccatcaccccattactaccccgaga
tatgggcagtgactatgagtgagttcactcttgcacttgtgcataaggct
tgttcactagttaggtgcagtggaagccagcgccatcttataatggcgat
tgctcacagcgcgcacatgattgctcgtggcacagctctccacagagaag
gattctcacagccaaccattggactgagtgtggggccccagatgaaatag
taagaaatgggctgatgaagcagatgcagccccatgattggagccacagt
gtcaaagtccaaatccccaagagttcctggagactggactaaaaaacaaa
tagtatatatgaagggactagttcatatgaggtagaggatggccttgctg
gacatcagtgggaggataggcccttgggcctgtgggggtttgatgcccca
gtttaggagaatctcagagatggaaggtgcaagtgagtagatgagaggag
gagcaccctcattgagcagtggagggaggaggggatagggatttccatcg
ggagactgaagggaaacttttgaatataataagaaaatccaaaaggaaag
attatttctccttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_151642130_151643299
seq2: B6Ng01-088G17.b_43_1218 (reverse)

seq1  AAACCCAAAGAAGCTAAACAGGAAGGAA--GGGCCAAGCAAGGATGCATG  48
      ||||||||||||||||||||||||||||  |||| | |||||  ||||||
seq2  AAACCCAAAGAAGCTAAACAGGAAGGAAAGGGGCAAGGCAAGATTGCATG  50

seq1  AATCTTACTTAGAA-GGGGGAAT-AAAATAG-TCAG-AAGAGGCAAAACT  94
       ||||||||||||| |||||||| ||||||| |||| ||||||| |||||
seq2  -ATCTTACTTAGAAGGGGGGAATAAAAATAGTTCAGAAAGAGGC-AAACT  98

seq1  AGGGAGGGAAGT-GGGTGGGAAAGCTGATGAGGAGGAGAATGGGGAGTAA  143
      | ||| |||||| |||||||||||||||||||||||||| ||||||||||
seq2  A-GGAAGGAAGTGGGGTGGGAAAGCTGATGAGGAGGAGATTGGGGAGTAA  147

seq1  GATCAGGT-GTGGAGAGA-GACAGGAGAGAAA-CCCAAAGGGCCAGGAGA  190
      |||||||| ||||||||| ||||||||||||| |||||||||||||||||
seq2  GATCAGGTGGTGGAGAGAGGACAGGAGAGAAACCCCAAAGGGCCAGGAGA  197

seq1  ATGACTGGAAATCTGCAGCTGCCAGGGAGTAGGGGTTGGGGAGTAGGGGA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGGAAATCTGCAGCTGCCAGGGAGTAGGGGTTGGGGAGTAGGGGA  247

seq1  AATCTCTAGGAAGTCCCAGAGACCTGGGATAGGGGAGGCTTCCAGGAGTC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTAGGAAGTCCCAGAGACCTGGGATAGGGGAGGCTTCCAGGAGTC  297

seq1  AATGCAGGTGATTTTAACCATGATCATCTAAAGCTACATAACAAGTCCAA  340
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGGTGA-TTTAACCATGATCATCTAAAGCTACATAACAAGTCCAA  346

seq1  GGCCAACCTGGAATATACAGAACCCTGTCCTAAAGAAGGAAGGAAGAAAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAACCTGGAATATACAGAACCCTGTCCTAAAGAAGGAAGGAAGAAAG  396

seq1  GAAAGAGAAGTGATAAAAAATATAGTAGTAATATGCATTCTGAATTCATG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAAGTGATAAAAAATATAGTAGTAATATGCATTCTGAATTCATG  446

seq1  TTCTCATTTAATTATCACAGGAACTCTAGCAATTTATTTTTAGTTTCAGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTTAATTATCACAGGAACTCTAGCAATTTATTTTTAGTTTCAGA  496

seq1  AATTTTAAAAGTTTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAAAGTTTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  546

seq1  GGCAGAGCACAGACAACTTGTGGGAGTTGATTCTCTCCTTCCCCTGAGTG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGCACAGACAACTTGTGGGAGTTGATTCTCTCCTTCCCCTGAGTG  596

seq1  GGGTCCCAGGGATACAACTGAGGTTGTCAGGCTGTGTGGCAAGTGCCTTA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCCAGGGATACAACTGAGGTTGTCAGGCTGTGTGGCAAGTGCCTTA  646

seq1  ACGTCTGGAGTCATCTCAAAAGTTCAATGAAGTTTATTTTTATTACCATA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTGGAGTCATCTCAAAAGTTCAATGAAGTTTATTTTTATTACCATA  696

seq1  AAGAGCCAGGATCTAGTTTAAATTTGTTTGACACAAAGTCAAATATTCAC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCAGGATCTAGTTTAAATTTGTTTGACACAAAGTCAAATATTCAC  746

seq1  CAGACCCAAAGTGCTTCTGGACTATGTCTCTTTGCCAGAAAAAGGGACTA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCAAAGTGCTTCTGGACTATGTCTCTTTGCCAGAAAAAGGGACTA  796

seq1  ATTCATTTAGCTGCCTTTTACATTTGTTTCAGACGTTACCACTGTTTTTG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTAGCTGCCTTTTACATTTGTTTCAGACGTTACCACTGTTTTTG  846

seq1  TTTGTTTGCTTTTGTAATTCGTTTGTTTGTTTGCTTGTTGCAGTGGAATC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGCTTTTGTAATTCGTTTGTTTGTTTGCTTGTTGCAGTGGAATC  896

seq1  TTTCCATGTTACCTCAACTGGCCTTTAACTATAGATCTTCTTACTGTAGT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATGTTACCTCAACTGGCCTTTAACTATAGATCTTCTTACTGTAGT  946

seq1  TTCCAGAGCATCATAGGCATATGTCCATACACTCGCTGATTTGGCTGTTG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGCATCATAGGCATATGTCCATACACTCGCTGATTTGGCTGTTG  996

seq1  TGAAACTATTTTTGTTTTGGATTTGCTAGATGAAAGCAGTTGAGTACCAG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTATTTTTGTTTTGGATTTGCTAGATGAAAGCAGTTGAGTACCAG  1046

seq1  GTGAAAGGCGGCACTGTTGATGGAACCCACCCTCCGCAATCCTGGAGTGA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGGCGGCACTGTTGATGGAACCCACCCTCCGCAATCCTGGAGTGA  1096

seq1  ATGGCCCCACTCAGAGCCTCCATTGAAAAGGCTCTCCCTGCTGTGCCTCT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCCACTCAGAGCCTCCATTGAAAAGGCTCTCCCTGCTGTGCCTCT  1146

seq1  GACATTATCAAAATAGAAAGCTGTGAATTC  1170
      ||||||||||||||||||||||||||||||
seq2  GACATTATCAAAATAGAAAGCTGTGAATTC  1176