BAC Information

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BAC

Clone NameB6Ng01-089F24
Chromosome1 (Build37)X (Build37)
Map Location 42,447,935 - 42,448,211137,275,016 - 137,276,050
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC383634, LOC666582
Downstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089F24.bB6Ng01-089F24.g
ACCDH901970DH901971
length9941,130
definitionDH901970|Mus musculus domesticus DNA, BAC clone: B6Ng01-089F24, 5' end.DH901971|Mus musculus domesticus DNA, BAC clone: B6Ng01-089F24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(42,447,935 - 42,448,211)(137,275,016 - 137,276,050)
sequence
gaattcattctgtattaacatttaaacatgatgtaaagtcaaagctgaga
ggcattcacttgcatacatttatacaattatttcagaactatgggtgaca
aaggtccattcccagtgcaatttgacttggcatctttatatacaaaatag
attgtccacacagaagttatatttgttgaccattctggccccctgctcaa
tattctctttacaccagtattgttcatgctgattactgtagctggcttgc
agtgaggtaggctaagttccctttgttattatttttcaaacgtctttgga
caattctaggttatttgtatttccataagaatttgaggttgagtctgtaa
gtttctttccttaaagactctattgagaatttttcttggtttgacaacca
atccagaggtgaatatgagaaaaacagaaaccttaacttcagtcaagcat
tgtgggggcattgcctgtaatcccagcacttgggagaaagaggcaggctt
aagagtttcaggccagcttggactacagagtgaaacatagttacttttat
ggatatgtttatcagaaatagttattagaaatgaaattgatgtaccatgc
gtggtggcacacgcctttaatcccagcactcgggaggcagagacaggcgg
atttctgagttcgaggccagcctggtctacaaagtgagttccaggacagc
cagggttatacagagaaacccctgtctcgaaaaaccaaaaggaaaaaaat
aaaagaaatgaaattgattatccaatctaagagttttctggtagaatcct
tatagagttcttagatcatggcatatttcaaaatgggataatttgatttt
cttccctttctccgtccacaccaactttctgttcgtgtgtctttttgctt
tagctaaaaatttaaccataatataaagcagtgagtgggggatccatctt
tccccagttttagataactgcttttcagattttccacaccacat
gaattcaccacgtaggttagggtatctgggtactgtgcctcagggatcta
ccagtctgcctttccagcactcgaatattaagtgtgtgctaccataccta
gatggctttttttaaaatttgggctctgaagatattctagatattaaccc
tctgacagataaaaagtgagcaaagggttttatcctagtctgtctatctc
ttcactcatttaactatttcctttgctatacaagttccttttaattccat
gagatcccatgtatccactgttcacattatttcctgaatgactggtcaag
ttgtactacagagccatattaattaaaataactaacatgattcctgacta
aaaaaccagaaacataaattaatgaaattagaataaaaaattcaggtatt
aacctgtacaactgcagctacccgatgtttaacaaagacaccagaaatac
atattggggcgaaaaagcagtcttttcaacaaatggtgagttgaaaactg
ggtgtccactgtagaagaatgaaactagacccacacctctcaccttgctt
aaatcttatcttcaagacctgtgacagtgaaattgttagaggaaaaggca
ggaaaaacatttccatacacgagcaaggatacgatattctgtgtctttga
gacaggctctcagttttagccccttggcatggaaacttactctctacccc
aaactgtcatcaaatactggacaataatcctgcctcagccccctaagtgc
tacgattatgggtacgaactgccacccttggctttcttagttttctttct
gtcttgctaataaaattaaacttttagcacttgcatttttatttccaaga
gtttccttttaaaatcttctattgattcttgagaattcatacagtatatt
tgatcatattcaccctctctccaacttttctcatagtcacctccacctcc
ttagctacccagcttgtgttttttctttttgtaactgatcatgtacagtt
tgtgctacccaaatagtcttgaatatgagcctgccatgaatgagttgatc
gacccaggggttacacctgttaagaaacctgaacaggcccctttctcagc
agctaacaatgcaatagtctcctcactggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_42447935_42448211
seq2: B6Ng01-089F24.b_652_1038

seq1  CACATGCCTTTGATCCCAGCACTTGGGAGGTAGAGGCAGGTGGATTTCTG  50
      |||| |||||| ||||||||||| |||||| |||| |||| |||||||||
seq2  CACACGCCTTTAATCCCAGCACTCGGGAGGCAGAGACAGGCGGATTTCTG  50

seq1  AGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCT  100
      |||||||||||||||||||||||| ||||||||||||||||||||||| |
seq2  AGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGTT  100

seq1  ACACAGA-AAAACCCTTTCTC--AAAAC----------AAAACAAA--AA  135
      | ||||| ||| |||| ||||  |||||          |||| |||  ||
seq2  ATACAGAGAAACCCCTGTCTCGAAAAACCAAAAGGAAAAAAATAAAAGAA  150

seq1  TTTACATTTATAAT-AAATCAAA----------ACAGTGTCC----AGTG  170
       | | ||| || ||  |||| ||            ||  |||    || |
seq2  ATGAAATTGATTATCCAATCTAAGAGTTTTCTGGTAGAATCCTTATAGAG  200

seq1  TTCCTA---------CTGTTTCAAA-------------------------  186
      ||| ||          | |||||||                         
seq2  TTCTTAGATCATGGCATATTTCAAAATGGGATAATTTGATTTTCTTCCCT  250

seq1  ---------GACACAAA------------GAGTAAT----CTTTA--TTA  209
                |||| ||            | ||  |    |||||  | |
seq2  TTCTCCGTCCACACCAACTTTCTGTTCGTGTGTCTTTTTGCTTTAGCTAA  300

seq1  GATTCCAAACATAAGACATTTTATACCTGTGA--------------TAT-  244
       | |  || |||||     | || | | ||||              | | 
seq2  AAATTTAACCATAA-----TATAAAGCAGTGAGTGGGGGATCCATCTTTC  345

seq1  --CAGT----GA-ACCTGATCTCC--ATTTTCCACACCACAT  277
        ||||    || | ||| | | |  ||||||||||||||||
seq2  CCCAGTTTTAGATAACTGCTTTTCAGATTTTCCACACCACAT  387

seq1: chrX_137275016_137276050
seq2: B6Ng01-089F24.g_173_1198

seq1  GCTTTTTTTAAAATTTGGGCTCTGAAGATATTCTAGATATTAACCCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTTTAAAATTTGGGCTCTGAAGATATTCTAGATATTAACCCTCTG  50

seq1  ACAGATAAAAAGTGAGCAAAGGGTTTTATCCTAGTCTGTCTATCTCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAAAAAGTGAGCAAAGGGTTTTATCCTAGTCTGTCTATCTCTTCA  100

seq1  CTCATTTAACTATTTCCTTTGCTATACAAGTTCCTTTTAATTCCATGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTAACTATTTCCTTTGCTATACAAGTTCCTTTTAATTCCATGAGA  150

seq1  TCCCATGTATCCACTGTTCACATTATTTCCTGAATGACTGGTCAAGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGTATCCACTGTTCACATTATTTCCTGAATGACTGGTCAAGTTGT  200

seq1  ACTACAGAGCCATATTAATTAAAATAACTAACATGATTCCTGACTAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGAGCCATATTAATTAAAATAACTAACATGATTCCTGACTAAAAA  250

seq1  ACCAGAAACATAAATTAATGAAATTAGAATAAAAAATTCAGGTATTAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAACATAAATTAATGAAATTAGAATAAAAAATTCAGGTATTAACC  300

seq1  TGTACAACTGCAGCTACCCGATGTTTAACAAAGACACCAGAAATACATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAACTGCAGCTACCCGATGTTTAACAAAGACACCAGAAATACATAT  350

seq1  TGGGGCGAAAAAGCAGTCTTTTCAACAAATGGTGAGTTGAAAACTGGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCGAAAAAGCAGTCTTTTCAACAAATGGTGAGTTGAAAACTGGGTG  400

seq1  TCCACTGTAGAAGAATGAAACTAGACCCACACCTCTCACCTTGCTTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGTAGAAGAATGAAACTAGACCCACACCTCTCACCTTGCTTAAAT  450

seq1  CTTATCTTCAAGACCTGTGACAGTGAAATTGTTAGAGGAAAAGGCAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTTCAAGACCTGTGACAGTGAAATTGTTAGAGGAAAAGGCAGGAA  500

seq1  AAACATTTCCATACACGAGCAAGGATACGATATTCTGTGTCTTTGAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTCCATACACGAGCAAGGATACGATATTCTGTGTCTTTGAGACA  550

seq1  GGCTCTCAGTTTTAGCCCCTTGGCATGG-AACTTACTCTCTACCCCAAAC  599
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGCTCTCAGTTTTAGCCCCTTGGCATGGAAACTTACTCTCTACCCCAAAC  600

seq1  TGTCATCAAATACTGGACAATAATCCTGCCTCAGCCCCCTAAGTGCTACG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCAAATACTGGACAATAATCCTGCCTCAGCCCCCTAAGTGCTACG  650

seq1  ATTATGGGTACGAACTGCCACCCTTGGCTTTCTTAGTTTTCTTTCTGTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGGTACGAACTGCCACCCTTGGCTTTCTTAGTTTTCTTTCTGTCT  700

seq1  TGCTAATAAAATTAAACTTTTAGCACTTGCATTTTTATTTCCAAGAGTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATAAAATTAAACTTTTAGCACTTGCATTTTTATTTCCAAGAGTTT  750

seq1  CCTTTTTAAAATCTTCTATTGATTCTTTGAGAATTTCATACAGTATATTT  799
      || |||||||||||||||||||||| ||||||| ||||||||||||| ||
seq2  CC-TTTTAAAATCTTCTATTGATTC-TTGAGAA-TTCATACAGTATA-TT  796

seq1  TGATCATATTCACCCTCTCTCCAAACTTTTCTCATAGTCACCTCCACCTC  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGATCATATTCACCCTCTCTCC-AACTTTTCTCATAGTCACCTCCACCTC  845

seq1  CTTAGCTACCCAGCTTTGTGTTTTTTTCTTTTTGTTAACTGATCATGTAC  899
      |||||||||||||| ||||| ||||||||||||| |||||||||||||||
seq2  CTTAGCTACCCAGC-TTGTG-TTTTTTCTTTTTG-TAACTGATCATGTAC  892

seq1  AGTTTGTGCTACCCAGATAGTCTTGAATATGAGGCCTGCCATGAAATGGA  949
      ||||||||||||||| |||||||||||||||| ||||||||||||   ||
seq2  AGTTTGTGCTACCCAAATAGTCTTGAATATGA-GCCTGCCATGAA--TGA  939

seq1  GTTGATCGA-CCAGGGGTTACA-CTGTTAAAGAAACCTGACAAG--CCCT  995
      ||||||||| |||||||||||| ||||| |||||||||||  ||  ||||
seq2  GTTGATCGACCCAGGGGTTACACCTGTT-AAGAAACCTGAACAGGCCCCT  988

seq1  TTCTCAGCAGCTATCAAATGCAAATAG-CTCCTCAGCTGGG  1035
      ||||||||||||| | ||||| ||||| ||||||| |||||
seq2  TTCTCAGCAGCTAAC-AATGC-AATAGTCTCCTCA-CTGGG  1026