BAC Information

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BAC

Clone NameB6Ng01-089N10
ChromosomeX (Build37)
Map Location 107,200,076 - 107,338,439
singlet/doubletdoublet
Overlap genenone
Upstream geneNsbp1, Sh3bgrl, EG622976, LOC100042831, LOC213474, LOC245573
Downstream geneEG634340, LOC668530, LOC100043316, Pou3f4, Cylc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089N10.bB6Ng01-089N10.g
ACCDH902309DH902310
length9441,130
definitionDH902309|Mus musculus domesticus DNA, BAC clone: B6Ng01-089N10, 5' end.DH902310|Mus musculus domesticus DNA, BAC clone: B6Ng01-089N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,337,906 - 107,338,439)(107,200,076 - 107,201,222)
sequence
gaattctctcagcattaaatgtgtacttctattttgatttttcacattgt
ttaaattattgtttgtatgaatgtcttctggactggattgtgaaatatga
gtagaaactcaaagatttgattacacatttctataattacaatatctgtc
ataatgtaggcattcaatgtcaacttaaatatttaatgtgaaggagctct
taattatatcatatatttcagtaactattaattaagcacctactaatgtc
actcagttgttgtaaacaaaaatgtacttgcattcaagccttcaaagaat
ataaaatctttgattaggactcattagaaagatacttatttttggttgtg
ggtctagcctttaatgtcaagccatacagggggaaaattcctgaacagta
taccaattgcttgttctgtaagatcaaaaatcaacaaatgggacctcata
aaattgtaaatgttctctgtaaggcaaaggacactgtcaatacgacaaaa
atagcaaccaaccgattgggaaaatatctttaccaatcctaaatctgata
gggggctaatatacaatatacacaaagaattcgaaaagttggactccaga
aaaccatataaccctattaaaaatggggtacagagctaaacaaaaaatgc
tcaactgaggaatactgaatggctgagaagctcctaaaaatattcaacat
ctttagtcatctgggaaatgcaagtcaaaacaaccctgagattctacctc
atgccagtcagaatggctaagatcagaaagtcaggtaacagcatatgctg
gcaaagatgtggagaaagaggaatactcctccattgctggtgggattgca
agctggtacaaccaaccactctggaaatcagtttggtggttcctcagaaa
ttggacatagtactatcagaagatccattataccactcctgggc
gaattcatttcatagtctagacactatttggtagtcaacctatttaaaat
aaaatgtaaggcagagagaaaatgcagagaaaaatagactttcatagaaa
agagtttgtaaggaaaatggggtgcaattagattttctgaaaagtgccct
gtctccatgggaatcaaactttcatttatatcccaaatatttgtttttct
gcaaaaccatgttttaaccattagtaacattttgaactgaaatttatagg
caagtttcagaaaattcagtgtagccccgtgaaagtacattgataaaatt
atcttcatgagaacatttccaagatatgtgtgggactcacttcattaaaa
tctatcctcaaaatctgtagtgtcttacttaaaatctttcattaaatacc
aagctgtgacacacagtccttatgcaagtgctctttgccactgagctatc
tcaccagcctaatcactgaagtttcatttccacagaggacatcacataaa
gactaagaaccattacatcattcactctcataaccccttaatccattaat
ctacaaaaagattagtccattcattagtacagacctttcatgatgaaatc
tcatgccaaaaagtgtttagggaaccaagttgccaaatttaggagactca
ttttaaccacagtcctgcataattttagataagacaatccttgcacgatt
ttgagactagctgcctaaatttgagcaaaaggatgctctaaggtggttga
taaaattaaatttggtactatgactgtcaaaaatggagtctgccactgta
gcatgcttttagacagtgtgatacggatagaagaatcagaagcaagacat
tttttaaattccatatttacatttcaaatgttatcccatctccaagtttc
ccatctggaaaccccctatcccatacgcctcctccttcttctatgaggtg
ctccctttcccatctacccattccaactcttaaccctgtcattcccttac
actgggacatctaacttcataggaccaaaggcctctcctctattatgctg
acaagcccccactgctacatatggagctgagccatgggttcctccatgtt
atctttgttcctgattagtctgggatcggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_107337906_107338439
seq2: B6Ng01-089N10.b_48_581 (reverse)

seq1  GGTAAAGATATTTTCCCAATCGGTTGGTTGCTATTTTTGTCGTATTGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGATATTTTCCCAATCGGTTGGTTGCTATTTTTGTCGTATTGACA  50

seq1  GTGTCCTTTGCCTTACAGAGAACATTTACAATTTTATGAGGTCCCATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTTTGCCTTACAGAGAACATTTACAATTTTATGAGGTCCCATTTG  100

seq1  TTGATTTTTGATCTTACAGAACAAGCAATTGGTATACTGTTCAGGAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTTGATCTTACAGAACAAGCAATTGGTATACTGTTCAGGAATTT  150

seq1  TCCCCCTGTATGGCTTGACATTAAAGGCTAGACCCACAACCAAAAATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTGTATGGCTTGACATTAAAGGCTAGACCCACAACCAAAAATAAG  200

seq1  TATCTTTCTAATGAGTCCTAATCAAAGATTTTATATTCTTTGAAGGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCTAATGAGTCCTAATCAAAGATTTTATATTCTTTGAAGGCTTG  250

seq1  AATGCAAGTACATTTTTGTTTACAACAACTGAGTGACATTAGTAGGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAGTACATTTTTGTTTACAACAACTGAGTGACATTAGTAGGTGCT  300

seq1  TAATTAATAGTTACTGAAATATATGATATAATTAAGAGCTCCTTCACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATAGTTACTGAAATATATGATATAATTAAGAGCTCCTTCACATT  350

seq1  AAATATTTAAGTTGACATTGAATGCCTACATTATGACAGATATTGTAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTAAGTTGACATTGAATGCCTACATTATGACAGATATTGTAATT  400

seq1  ATAGAAATGTGTAATCAAATCTTTGAGTTTCTACTCATATTTCACAATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATGTGTAATCAAATCTTTGAGTTTCTACTCATATTTCACAATCC  450

seq1  AGTCCAGAAGACATTCATACAAACAATAATTTAAACAATGTGAAAAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGAAGACATTCATACAAACAATAATTTAAACAATGTGAAAAATCA  500

seq1  AAATAGAAGTACACATTTAATGCTGAGAGAATTC  534
      ||||||||||||||||||||||||||||||||||
seq2  AAATAGAAGTACACATTTAATGCTGAGAGAATTC  534

seq1: chrX_107200076_107201222
seq2: B6Ng01-089N10.g_70_1199

seq1  GAATTCATTTCATAGTCTAGACACTATTTGGTAGTCAACCTATTTAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCATAGTCTAGACACTATTTGGTAGTCAACCTATTTAAAAT  50

seq1  AAAATGTAAGGCAGAGAGAAAATGCAGAGAAAAATAGACTTTCATAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTAAGGCAGAGAGAAAATGCAGAGAAAAATAGACTTTCATAGAAA  100

seq1  AGAGTTTGTAAGGAAAATGGGGTGCAATTAGATTTTCTGAAAAGTGCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGTAAGGAAAATGGGGTGCAATTAGATTTTCTGAAAAGTGCCCT  150

seq1  GTCTCCATGGGAATCAAACTTTCATTTATATCCCAAATATTTGTTTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATGGGAATCAAACTTTCATTTATATCCCAAATATTTGTTTTTCT  200

seq1  GCAAAACCATGTTTTAACCATTAGTAACATTTTGAACTGAAATTTATAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACCATGTTTTAACCATTAGTAACATTTTGAACTGAAATTTATAGG  250

seq1  CAAGTTTCAGAAAATTCAGTGTAGCCCCGTGAAAGTACATTGATAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTCAGAAAATTCAGTGTAGCCCCGTGAAAGTACATTGATAAAATT  300

seq1  ATCTTCATGAGAACATTTCCAAGATATGTGTGGGACTCACTTCATTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCATGAGAACATTTCCAAGATATGTGTGGGACTCACTTCATTAAAA  350

seq1  TCTATCCTCAAAATCTGTAGTGTCTTACTTAAAATCTTTCATTAAATACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCTCAAAATCTGTAGTGTCTTACTTAAAATCTTTCATTAAATACC  400

seq1  AAGCTGTGACACACAGTCCTTATGCAAGTGCTCTTTGCCACTGAGCTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTGACACACAGTCCTTATGCAAGTGCTCTTTGCCACTGAGCTATC  450

seq1  TCACCAGCCTAATCACTGAAGTTTCATTTCCACAGAGGACATCACATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGCCTAATCACTGAAGTTTCATTTCCACAGAGGACATCACATAAA  500

seq1  GACTAAGAACCATTACATCATTCACTCTCATAACCCCTTAATCCATTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGAACCATTACATCATTCACTCTCATAACCCCTTAATCCATTAAT  550

seq1  CTACAAAAAGATTAGTCCATTCATTAGTACAGACCTTTCATGATGAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAAAGATTAGTCCATTCATTAGTACAGACCTTTCATGATGAAATC  600

seq1  TCATGCCAAAAAGTGTTTAGGGAACCAAGTTGCCAAATTTAGGAGACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCAAAAAGTGTTTAGGGAACCAAGTTGCCAAATTTAGGAGACTCA  650

seq1  TTTTAACCACAGTCCTGCATAATTTTAGATAAGACAATCCTTGCACGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACCACAGTCCTGCATAATTTTAGATAAGACAATCCTTGCACGATT  700

seq1  TTGAGACTAGCTGCCTAAATTTGAGCAAAAGGATGCTCTAAGGTGGTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACTAGCTGCCTAAATTTGAGCAAAAGGATGCTCTAAGGTGGTTGA  750

seq1  TAAAATTAAATTTGGTACTATGACTGTCAAAAAATGGAGTCTGCCACTGT  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAAAATTAAATTTGGTACTATGACTGTC-AAAAATGGAGTCTGCCACTGT  799

seq1  AGCATGCTTTTAGACAGTGTGATACGGATAGAAGAATCAGAAGCAAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCTTTTAGACAGTGTGATACGGATAGAAGAATCAGAAGCAAGACA  849

seq1  TTTTTT-AATTCCATATTTACATTTCAAATGTTATCCCATCTCCAAGTTT  899
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAATTCCATATTTACATTTCAAATGTTATCCCATCTCCAAGTTT  899

seq1  CCCATCTGGAAACCCCCTATCCCATACGCCTCCTCCTTCTTCTATGAGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCCATCTGGAAACCCCCTATCCCATACGCCTCCTCCTTCTTCTATGA-GG  948

seq1  TGCTCCCTTTCCCATCTACCCATTCCCAACTCTTAACCCTGTCATTCCCC  999
      |||||||||||||||||||||||| |||||||||||||||||||||||| 
seq2  TGCTCCCTTTCCCATCTACCCATT-CCAACTCTTAACCCTGTCATTCCCT  997

seq1  TACACTGGGACATCTAACCTTCATAGGACCAAAGGCCTCTCCTCCTATTA  1049
      ||||||||||||||||| ||||||||||||||||||||||||| ||||| 
seq2  TACACTGGGACATCTAA-CTTCATAGGACCAAAGGCCTCTCCT-CTATT-  1044

seq1  ATGCCTGACAAGGCCACCCACTGCTACATATGGAGCTGGAGCCATGGGTT  1099
      ||| ||||||||  | ||||||||||||||||||||| ||||||||||||
seq2  ATG-CTGACAAG--CCCCCACTGCTACATATGGAGCT-GAGCCATGGGTT  1090

seq1  CCTCCATGTATAGTCTTTGTTTCCTGGTTTAGTCCCTGGGAGTTCGGG  1147
      ||||||||| || |||||| ||||| | |||||  ||||||  |||||
seq2  CCTCCATGT-TA-TCTTTG-TTCCT-GATTAGT--CTGGGA--TCGGG  1130