BAC Information

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BAC

Clone NameB6Ng01-089O16
Chromosome13 (Build37)X (Build37)
Map Location 32,313,345 - 32,313,473112,412,931 - 112,413,978
singlet/doubletsingletsinglet
Overlap geneGmds
Upstream geneG630018N14Rik, LOC100042491, Foxq1, LOC100041312, Foxf2, Foxc1, 4930548F15Rik, LOC666212
Downstream geneWrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c, Serpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089O16.bB6Ng01-089O16.g
ACCDH902365DH902366
length1,0331,051
definitionDH902365|Mus musculus domesticus DNA, BAC clone: B6Ng01-089O16, 5' end.DH902366|Mus musculus domesticus DNA, BAC clone: B6Ng01-089O16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,313,345 - 32,313,473)(112,412,931 - 112,413,978)
sequence
gaattcaaggcccatacctaaacacgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaacggtgagaagcttgaagcaatcccactaaa
atcagggactagacaaggctgcccactttctcactacctattcaacatag
tacttgaaatcctagccagagcaatttgacaacaaaaagacatcaagggg
atacaaattggaaaagatgaagtcaaaatatcacttttcgcagatgataa
gatagtatatatcagtgaccctaaaaattccaccagagaactcctaaacc
tgataaacagcttcactgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
aaaaacaacacccttctcaatagtcacaaatagtataaaatatcttggca
tgactctaactaaggaagtgaacgatctgtatgataaacacatgaaactc
aagaagaatgaagactgaagtgtggacactatgcccctttttagaattgg
gaacaaaacacccatcgaaggagttacagagacaaagtttggagctgaga
ccaaaggatggaccatctagagactgccatatccagggatccaccccata
atcagcttccaaacgcagacaccattacatactctagcaagattttatcg
aaaggacccagatgtagctgtctcttgtgagtctatgccagggccttgca
aacacagaagtggatgctcacagtcagctattggatggatcacagggcac
acaatggaggagctagagaaagtacccaaggagctaaagggatctgcaac
cctataggtggaacaacattatgaactaaccagtaccccggagctcttga
ctctagctgcatatgtatcaaagatggccagtctgccatcactggaaaga
gaggcccattggacatgcaaactgtatatgcccagtacaggggaacgcca
gggccaaaaaaagggggaatgagtggggtaggg
gaattctacagttgtgaaaagacatcatgatgacaactgttacaaaataa
agcatttgattgggatttagaggttcagtccatcatcactatggtgggaa
gcatggcaccatgcaagtagacatagagctggacaattagctgaaagttc
tacctctggatcctcaggcaggaggaaaagagacaatgggcttgtcttgg
gcttttaaattcttatgaccaccactgatgacacacttcttccaacaagg
ccataacttctaatcacttccaactagtgccagtccctgatcattaaaca
ttcaaatatgtgagcctatgggaccatttttattcagagcactgaaataa
gccaatgtattattgtgaagttatacattatttggcaatttgtctccata
gatacattttacattgagaacaagagacaggggaaagaaaaatgcgcagc
cattattttacaggcaactgagattcatttgatgatgctttgaaaatatg
aaactttatatttcacaagcccttaggagacagcaatcaattttaaaaat
atttttattattttttaaattatgtgtatatattgataggtaagtatgtg
catatgactgtaagtgtccatggaatccagaagtgagtgttgattttgac
tggcactgaaattacaggcagttgcaattcacctgacatttggatctgtg
tactacattctggtcctctgaaagagaagttcgtactcttaactgctaag
gtcagaatagagtttcttaactggaatgagggctatccccaagctgttgc
cttgtatctgggaaatgtatttcgagcagggctgccttttctggcctcag
tgggaaaggaaactcctagcttagcacagactttgaagtaccatggttag
ggggtcacacatgggggttcaccagccacttcaaagagaatgaaaaggaa
gtcaataggggaaaggattgttgctggggagactgtggattgaacagtaa
gaagatgcaaataataactgaaatatatttaattttaaaaaaagaaataa
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_32313345_32313473
seq2: B6Ng01-089O16.b_950_1078 (reverse)

seq1  CCCTA-CCCACCCACTCCCCC--TTTTTGGCCCTGGCGTTCCCCTGTACT  47
      ||||| ||||| || ||||||  |||||||||||||||||||||||||||
seq2  CCCTACCCCACTCATTCCCCCTTTTTTTGGCCCTGGCGTTCCCCTGTACT  50

seq1  GGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGATGGC  97
       ||||||||| |||||||| ||||||||||||||||||| ||||||||||
seq2  -GGGCATATACAGTTTGCATGTCCAATGGGCCTCTCTTTCCAGTGATGGC  99

seq1  CGACTAGGCCATCTTTTGATACATATGCAGCT  129
       |||| ||||||| ||||||||||||||||||
seq2  AGACT-GGCCATC-TTTGATACATATGCAGCT  129

seq1: chrX_112412931_112413978
seq2: B6Ng01-089O16.g_71_1121

seq1  GAATTCTACAGTTGTGAAAAGACATCATGATGACAACTGTTACAAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGTTGTGAAAAGACATCATGATGACAACTGTTACAAAATAA  50

seq1  AGCATTTGATTGGGATTTAGAGGTTCAGTCCATCATCACTATGGTGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTGATTGGGATTTAGAGGTTCAGTCCATCATCACTATGGTGGGAA  100

seq1  GCATGGCACCATGCAAGTAGACATAGAGCTGGACAATTAGCTGAAAGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCACCATGCAAGTAGACATAGAGCTGGACAATTAGCTGAAAGTTC  150

seq1  TACCTCTGGATCCTCAGGCAGGAGGAAAAGAGACAATGGGCTTGTCTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTGGATCCTCAGGCAGGAGGAAAAGAGACAATGGGCTTGTCTTGG  200

seq1  GCTTTTAAATTCTTATGACCACCACTGATGACACACTTCTTCCAACAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAAATTCTTATGACCACCACTGATGACACACTTCTTCCAACAAGG  250

seq1  CCATAACTTCTAATCACTTCCAACTAGTGCCAGTCCCTGATCATTAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAACTTCTAATCACTTCCAACTAGTGCCAGTCCCTGATCATTAAACA  300

seq1  TTCAAATATGTGAGCCTATGGGACCATTTTTATTCAGAGCACTGAAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATATGTGAGCCTATGGGACCATTTTTATTCAGAGCACTGAAATAA  350

seq1  GCCAATGTATTATTGTGAAGTTATACATTATTTGGCAATTTGTCTCCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGTATTATTGTGAAGTTATACATTATTTGGCAATTTGTCTCCATA  400

seq1  GATACATTTTACATTGAGAACAAGAGACAGGGGAAAGAAAAATGCGCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATTTTACATTGAGAACAAGAGACAGGGGAAAGAAAAATGCGCAGC  450

seq1  CATTATTTTACAGGCAACTGAGATTCATTTGATGATGCTTTGAAAATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTTACAGGCAACTGAGATTCATTTGATGATGCTTTGAAAATATG  500

seq1  AAACTTTATATTTCACAAGCCCTTAGGAGACAGCAATCAATTTTAAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTATATTTCACAAGCCCTTAGGAGACAGCAATCAATTTTAAAAAT  550

seq1  ATTTTTATTATTTTTTAAATTATGTGTATATATTGATAGGTAAGTATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTATTTTTTAAATTATGTGTATATATTGATAGGTAAGTATGTG  600

seq1  CATATGACTGTAAGTGTCCATGGAATCCAGAAGTGAGTGTTGA-TTTGAC  649
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CATATGACTGTAAGTGTCCATGGAATCCAGAAGTGAGTGTTGATTTTGAC  650

seq1  TGGCACTGAAATTACAGGCAGTTGCAATTCACCTGACA-TTGGATCTGTG  698
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGCACTGAAATTACAGGCAGTTGCAATTCACCTGACATTTGGATCTGTG  700

seq1  TACTACATTCTGGTCCTCTGAAAGAGAAGTTCGTACTCTTAACTGCTAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACATTCTGGTCCTCTGAAAGAGAAGTTCGTACTCTTAACTGCTAAG  750

seq1  GTCAAGAAATAGAG-TTCTTAACTGGAATGAGGGCTATCCCCAAAGCTGT  797
      ||||   ||||||| ||||||||||||||||||||||||||| |||||||
seq2  GTCA--GAATAGAGTTTCTTAACTGGAATGAGGGCTATCCCC-AAGCTGT  797

seq1  TGCC-TGTATCTGGGAAATGTTATTCGAGCAGGGCTGCCTTTTCTGGCCT  846
      |||| ||||||||||||||||  |||||||||||||||||||||||||||
seq2  TGCCTTGTATCTGGGAAATGTATTTCGAGCAGGGCTGCCTTTTCTGGCCT  847

seq1  CAGTGGGAAAGGAAACTCCTAGCTTAGCACAGAC-TTGAAGTACCAT-GT  894
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  CAGTGGGAAAGGAAACTCCTAGCTTAGCACAGACTTTGAAGTACCATGGT  897

seq1  TAGGGGGTCACACATGGGGG-TCACCAGCCACTCAGAAGAG-ATGGAGAG  942
      |||||||||||||||||||| ||||||||||||   ||||| ||| | ||
seq2  TAGGGGGTCACACATGGGGGTTCACCAGCCACTTCAAAGAGAATGAAAAG  947

seq1  GAGGTC-ATAGGGG-AAGGATTGTGGCAGGGGGAGACTGGGGGATGAACA  990
      || ||| ||||||| ||||||||| ||  |||||||||| ||  ||||||
seq2  GAAGTCAATAGGGGAAAGGATTGTTGC-TGGGGAGACTGTGGATTGAACA  996

seq1  GTAAGAAGGATGCAAATAAATAACTGAAATATTAATTAAATTTAAAAAAA  1040
      ||||||| ||||||||| ||||||||||||| || |||| ||||||||||
seq2  GTAAGAA-GATGCAAAT-AATAACTGAAATA-TATTTAATTTTAAAAAAA  1043

seq1  GAAATAAA  1048
      ||||||||
seq2  GAAATAAA  1051