BAC Information

Click to search

BAC

Clone NameB6Ng01-095H12
Chromosome19 (Build37)X (Build37)
Map Location 26,118,693 - 26,119,809149,559,993 - 149,560,077
singlet/doubletsingletsinglet
Overlap gene1700048O14Rik
Upstream geneDock8, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806
Downstream geneLOC100041846, LOC100041857, Smarca2, Gm815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095H12.bB6Ng01-095H12.g
ACCDH906403DH906404
length1,104952
definitionDH906403|Mus musculus domesticus DNA, BAC clone: B6Ng01-095H12, 5' end.DH906404|Mus musculus domesticus DNA, BAC clone: B6Ng01-095H12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(26,118,693 - 26,119,809)(149,559,993 - 149,560,077)
sequence
gaattcttgggaaagtctgggcctgagaagagctttttctttccaaggtc
agaaatcagaatgtgtcactgtggcaaggtgacagtgtcctcagctgtgc
ttggaattcagcactggcctggccagtgggggatctgtatgtctgggact
tcttcaagcattatcaccccggcactactgtgggatgctcttcaggaagc
ctcccttgttgtccacatgctcaggaataggagagggagaactggataga
aatagtggctgtggctgaagaaaggcttcgtgttgggcctggaaagcact
gagagaccttgaggaagcttctcttctcttctgagtacagtgacagcgaa
aacaggcagctggaactattgtaacatgaatacccagttccctttcgtga
gcctaatttttaataataaaacacatcttggtggggagtgtggtctgtat
taccattagcatttttcaggtaaccagttggctagaaatgcattctgggg
tcaggctatagaatcaatagccccaaacaaatttcattactgtatttgta
attaattttgtttgaggggggaaggtaacaaagaaggtgaacgcagactt
gcatagcgtttttgcttttgattagatttgcatttgactttatttcttaa
ggacttttcaaatgatggaacaaatcattctaataatatgctgtgttggt
gatatgaatgccatgccaaaatgtaactgttagttaaaatgtgtttagtt
taaaaaactattcctatctgttcatttttcaaactgtgtaattgttagaa
taaaatcagagagcacatgcgagtatctaccacaatgaagcccatataat
tagtagttcactatgtctaggtaccataaaagacattgctttatattttc
taatacaggcaggatctcaggagagggcaggcattgtgctcttaacatga
aaaccttgatagatttgggtgacagtgtctggctatacaggaaactctgg
atgtctggtacaaataatgcactgtgctgatttggagcatgtatctaggc
ttcttacaatagacgtcgttctcagaaactgctccacttatgacctttga
tgat
gaattccaggacagccagggctacacagagaaaccctgtctcaaaagacc
aaccaaacaacaacaacaaatgaaccaaacacataggaaaatggatttaa
tcagtcactgacaaaagtgaatcataataataataataagtaacacaacc
aaattggtaaagatgccaagaaattaaaattctcatatactattcaggga
atacaacatctgttaactttgtcatacctattaaagcagagcaactgtat
aagctccgccttgatagtcccctctatgaagagacctaccaatacctgtt
cacatctccaccgaaacttgtcaaaatttccctgtcagcattattttccc
tggaagtaaaataacccaaattccaatcgataataaaatggatctttttg
ataaaactatgcagtaaataccttactgttataataatgcatttttagac
taaataaatatttataacatttaccaaaaaataatgttgagtttcaaaag
aaacatacacaacagtcaggctatgggaatattatttataccatgttcaa
agccaggcaaaagttatcaatggcaacagatccaggggagttggttctct
gagggaaagggtcaaggctagagaagattttcaaaaacatagtgtgatat
cattgcacatatattagggtgattattatttttcagaagaaaagcatgta
tttgtgagacatttcaaaaattaaaagcaaaacactattcacaatggtca
atacatgaaaacaatctaggtatcattaacaaatggtcactaggagatgc
accatggagtcaaccattggtctcaacctccctagttctgtggccctttg
atacatctcctcatgttgtgatgaccaccaatcaaaagttgttttgttac
tacttcataactgtcatttggtattatatgaatcctaataatacaggtat
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_26118693_26119809
seq2: B6Ng01-095H12.b_44_1147

seq1  GAATTCTTGGGAAAGTCTGGGCCTGAGAAGAGCTTTTTCTTTCCAAGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGAAAGTCTGGGCCTGAGAAGAGCTTTTTCTTTCCAAGGTC  50

seq1  AGAAATCAGAATGTGTCACTGTGGCAAGGTGACAGTGTCCTCAGCTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCAGAATGTGTCACTGTGGCAAGGTGACAGTGTCCTCAGCTGTGC  100

seq1  TTGGAATTCAGCACTGGCCTGGCCAGTGGGGGATCTGTATGTCTGGGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATTCAGCACTGGCCTGGCCAGTGGGGGATCTGTATGTCTGGGACT  150

seq1  TCTTCAAGCATTATCACCCCGGCACTACTGTGGGATGCTCTTCAGGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAGCATTATCACCCCGGCACTACTGTGGGATGCTCTTCAGGAAGC  200

seq1  CTCCCTTGTTGTCCACATGCTCAGGAATAGGAGAGGGAGAACTGGATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTGTTGTCCACATGCTCAGGAATAGGAGAGGGAGAACTGGATAGA  250

seq1  AATAGTGGCTGTGGCTGAAGAAAGGCTTCGTGTTGGGCCTGGAAAGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGGCTGTGGCTGAAGAAAGGCTTCGTGTTGGGCCTGGAAAGCACT  300

seq1  GAGAGACCTTGAGGAAGCTTCTCTTCTCTTCTGAGTACAGTGACAGCGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACCTTGAGGAAGCTTCTCTTCTCTTCTGAGTACAGTGACAGCGAA  350

seq1  AACAGGCAGCTGGAACTATTGTAACATGAATACCCAGTTCCCTTTCGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCAGCTGGAACTATTGTAACATGAATACCCAGTTCCCTTTCGTGA  400

seq1  GCCTAATTTTTAATAATAAAACACATCTTGGTGGGGAGTGTGGTCTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAATTTTTAATAATAAAACACATCTTGGTGGGGAGTGTGGTCTGTAT  450

seq1  TACCATTAGCATTTTTCAGGTAACCAGTTGGCTAGAAATGCATTCTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTAGCATTTTTCAGGTAACCAGTTGGCTAGAAATGCATTCTGGGG  500

seq1  TCAGGCTATAGAATCAATAGCCCCAAACAAATTTCATTACTGTATTTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTATAGAATCAATAGCCCCAAACAAATTTCATTACTGTATTTGTA  550

seq1  ATTAATTTTGTTTGAGGGGGGAAGGTAACAAAGAAGGTGAACGCAGACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTTGTTTGAGGGGGGAAGGTAACAAAGAAGGTGAACGCAGACTT  600

seq1  GCATAGCGTTTTTGCTTTTGATTAGATTTGCATTTGACTTTATTTCTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCGTTTTTGCTTTTGATTAGATTTGCATTTGACTTTATTTCTTAA  650

seq1  GGACTTTTCAAATGATGGAACAAATCATTCTAATAATATGCTGTGTTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTTCAAATGATGGAACAAATCATTCTAATAATATGCTGTGTTGGT  700

seq1  GATATGAATGCCATGCCAAAATGTAACTGTTAGTTAAAATGTGTTTAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGAATGCCATGCCAAAATGTAACTGTTAGTTAAAATGTGTTTAGTT  750

seq1  TAAAAAACTATTCCTATCTGTTCATTTTTCAAACTGTGTAATTGTTAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACTATTCCTATCTGTTCATTTTTCAAACTGTGTAATTGTTAGAA  800

seq1  TAAAATCAGAGAGCACATGCGAGTATCTACCACAATGAAGCCCATATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCAGAGAGCACATGCGAGTATCTACCACAATGAAGCCCATATAAT  850

seq1  TAGTAGTTCACTATGTCTAGGTACCATAAAAGACATTGCTTTATA-TTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAGTAGTTCACTATGTCTAGGTACCATAAAAGACATTGCTTTATATTTTC  900

seq1  TAATACAGGCAGGATCTCAGGAGAGGGCAGGCATTGTGCTCTTAACATGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACAGGCAGGATCTCAGGAGAGGGCAGGCATTGTGCTCTTAACATGA  950

seq1  AAACCTTTGATAAGATTTGGGTGACAGTGTCTGGCTATACAGGAAACTCT  999
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAACC-TTGAT-AGATTTGGGTGACAGTGTCTGGCTATACAGGAAACTCT  998

seq1  GGATGTCTGGTACAAATAAATGCACTGTGCTGAATTTGGAGGCCATGTAT  1049
      ||||||||||||||||| |||||||||||||| ||||||||  |||||||
seq2  GGATGTCTGGTACAAAT-AATGCACTGTGCTG-ATTTGGAG--CATGTAT  1044

seq1  CTAAGGGCCTTTCTACCATAAGACCGTTCGTTCTTCAGAAACTGCTCCCA  1099
      |||  |||  ||||  ||  ||||   |||||| |||||||||||| |||
seq2  CTA--GGC--TTCTTACAATAGAC--GTCGTTC-TCAGAAACTGCT-CCA  1086

seq1  CTTATGACCTTTGATGAT  1117
      ||||||||||||||||||
seq2  CTTATGACCTTTGATGAT  1104

seq1: chrX_149559993_149560077
seq2: B6Ng01-095H12.g_71_397

seq1  TTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAATAAA  50
      |||||||||||||||||||||||||||||||||||||||  ||||    |
seq2  TTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTC--AAAAGACCA  48

seq1  ACAAAACAACAACAACAAAAGAATGTCAAAATTTC---------------  85
      || |||||||||||||||| |||   | |||   |               
seq2  ACCAAACAACAACAACAAATGAA---CCAAA---CACATAGGAAAATGGA  92

seq1  --------------------------------------------------  85
                                                        
seq2  TTTAATCAGTCACTGACAAAAGTGAATCATAATAATAATAATAAGTAACA  142

seq1  --------------------------------------------------  85
                                                        
seq2  CAACCAAATTGGTAAAGATGCCAAGAAATTAAAATTCTCATATACTATTC  192

seq1  --------------------------------------------------  85
                                                        
seq2  AGGGAATACAACATCTGTTAACTTTGTCATACCTATTAAAGCAGAGCAAC  242

seq1  --------------------------------------------------  85
                                                        
seq2  TGTATAAGCTCCGCCTTGATAGTCCCCTCTATGAAGAGACCTACCAATAC  292

seq1  -----------------------------------  85
                                         
seq2  CTGTTCACATCTCCACCGAAACTTGTCAAAATTTC  327