BAC Information

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BAC

Clone NameB6Ng01-097A06
ChromosomeX (Build37)
Map Location 100,763,752 - 100,887,879
singlet/doubletdoublet
Overlap geneLOC668415, B230206F22Rik, Cnbp2, LOC100042640
Upstream genePhka1, LOC668331, LOC100042516, EG668339, Dmrtc1b, EG668343, LOC100043105, EG668349, EG382233, Dmrtc1c, EG668360, LOC668357, 1700031F05Rik, EG668369, Dmrtc1a, 1700011M02Rik, 1700018G05Rik, EG331480, EG668382, LOC668387, EG245545, LOC100042610, EG621205, Nap1l2, LOC668217, 4930519F16Rik, LOC100042615, Cdx4, LOC671052, Chic1, Tsx, Tsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412
Downstream geneSlc16a2, EG621381, EG668426, LOC668430, Rnf12, C77370, Vcp-ps, EG621542, Uprt, Zdhhc15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097A06.bB6Ng01-097A06.g
ACCDH907500DH907501
length1,093128
definitionDH907500|Mus musculus domesticus DNA, BAC clone: B6Ng01-097A06, 5' end.DH907501|Mus musculus domesticus DNA, BAC clone: B6Ng01-097A06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,886,779 - 100,887,879)(100,763,752 - 100,763,879)
sequence
gaattcagcatccaaaagcagacatggtgctgaagaagtagctgagagtt
ctacatccagatccacaggcaaaaggaagagagacactgggattggctca
aggttttgaaacccagaaacccaccccaataaggccacgcctactccaac
taggccacacctcctaaaccttctcaagtaatgtaactccctaatgacca
agcatccaaatgtatgagtctatagaggccattcttattccaaccaccac
tctgtcttccaggctcttttcaaactgaagattaacactccaaaaacagc
ttcttgtgctttgctgcctcaattctcattcctcagatcatcatcactgc
aaactaatttccaggaccttccttggctcaaggatcaccataaggccttt
tgtctaggcttgttattggagcaaagcaaagaagctcatgtggtatcatc
ttgaataaaaatgttccctataggctcatatatgtgaatgcttcgtcatc
aggaagtggcactatttgagaaggattagatagattaggaggtgtggcct
tgttggaggaagtgtgtcgctgttggatgggtgttgagatttcaaaagca
catgattctctttttcctcttacagatcaggttgtaagtctcagctactg
ctccagtgcctacctgtatgccaacttgctccctgccatgatcataatgg
gctaagtctctgaaactataagcaagcccccaattaaatgtttttcttta
tgagttgtcttatgagtcatagtgtctctttaaagcaatacatcactggc
tagtatagctcattttctttttctctactctattttgttttctatttcta
ttttcttttttgaaaaaagaattattttcttattttatttatatgagtac
actgtagctgtcttcagacacagcagacaagagcatcagatcccattaca
gatggttgtgagccaccatgtggttgccaggaattgaactcaggactctg
aagagcagttggtgctcttaaccactgaacctctctctagacctctcttt
tctatttcaagaacagtttctctgtgtagccttggccatctgg
agcctctactcctgggtcaatactgacaaactattgtgcttatgcattct
cactgggaaacaatcccatgccttggggcctttaccacagggatttttgt
ttgtttgcgggggtggtggtgggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_100886779_100887879
seq2: B6Ng01-097A06.b_47_1139 (reverse)

seq1  CCAGAATGGCCAGGGCTACACAGAGAAACCTTGTTCTTGAAAATAGAAAA  50
      |||| ||||||| ||||||||||||||||  |||||||| ||||||||||
seq2  CCAG-ATGGCCAAGGCTACACAGAGAAAC--TGTTCTTG-AAATAGAAAA  46

seq1  GAGAGGTCTAGAGAGAGGGTTCAGTGGTTAAGAGCACCAACTGCTCTTTC  100
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  GAGAGGTCTAGAGAGA-GGTTCAGTGGTTAAGAGCACCAACTGCTC-TTC  94

seq1  AGAGGTCCTGAGTTCAATTCCTGGCAACCACATGGTGGCTCACAACCATC  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGA-GTCCTGAGTTCAATTCCTGGCAACCACATGGTGGCTCACAACCATC  143

seq1  TGTAATGGGATCTGATGCTCTTGTCTGCTGTGTCTGAAGACAGCTACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGGGATCTGATGCTCTTGTCTGCTGTGTCTGAAGACAGCTACAGT  193

seq1  GTACTCATATAAATAAAATAAGAAAATAATTCTTTTTTCAAAAAAGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCATATAAATAAAATAAGAAAATAATTCTTTTTTCAAAAAAGAAAA  243

seq1  TAGAAAATAGAAAACAAAATAGAGTAGAGAAAAAGAAAATGAGCTATACT  300
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAG-AAATAGAAAACAAAATAGAGTAGAGAAAAAGAAAATGAGCTATACT  292

seq1  AGCCAGTGATGTATTGCTTTAAAGAGACACTATGACTCATAAGACAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTGATGTATTGCTTTAAAGAGACACTATGACTCATAAGACAACTC  342

seq1  ATAAAGAAAAACATTTAATTGGGGGCTTGCTTATAGTTTCAGAGACTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAAAACATTTAATTGGGGGCTTGCTTATAGTTTCAGAGACTTAG  392

seq1  CCCATTATGATCATGGCAGGGAGCAAGTTGGCATACAGGTAGGCACTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTATGATCATGGCAGGGAGCAAGTTGGCATACAGGTAGGCACTGGA  442

seq1  GCAGTAGCTGAGACTTACAACCTGATCTGTAAGAGGAAAAAGAGAATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGCTGAGACTTACAACCTGATCTGTAAGAGGAAAAAGAGAATCAT  492

seq1  GTGCTTTTGAAATCTCAACACCCATCCAACAGCGACACACTTCCTCCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTTGAAATCTCAACACCCATCCAACAGCGACACACTTCCTCCAAC  542

seq1  AAGGCCACACCTCCTAATCTATCTAATCCTTCTCAAATAGTGCCACTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCACACCTCCTAATCTATCTAATCCTTCTCAAATAGTGCCACTTCC  592

seq1  TGATGACGAAGCATTCACATATATGAGCCTATAGGGAACATTTTTATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACGAAGCATTCACATATATGAGCCTATAGGGAACATTTTTATTCA  642

seq1  AGATGATACCACATGAGCTTCTTTGCTTTGCTCCAATAACAAGCCTAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATACCACATGAGCTTCTTTGCTTTGCTCCAATAACAAGCCTAGAC  692

seq1  AAAAGGCCTTATGGTGATCCTTGAGCCAAGGAAGGTCCTGGAAATTAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCCTTATGGTGATCCTTGAGCCAAGGAAGGTCCTGGAAATTAGTT  742

seq1  TGCAGTGATGATGATCTGAGGAATGAGAATTGAGGCAGCAAAGCACAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGATGATGATCTGAGGAATGAGAATTGAGGCAGCAAAGCACAAGA  792

seq1  AGCTGTTTTTGGAGTGTTAATCTTCAGTTTGAAAAGAGCCTGGAAGACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTTTTGGAGTGTTAATCTTCAGTTTGAAAAGAGCCTGGAAGACAG  842

seq1  AGTGGTGGTTGGAATAAGAATGGCCTCTATAGACTCATACATTTGGATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGGTTGGAATAAGAATGGCCTCTATAGACTCATACATTTGGATGC  892

seq1  TTGGTCATTAGGGAGTTACATTACTTGAGAAGGTTTAGGAGGTGTGGCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCATTAGGGAGTTACATTACTTGAGAAGGTTTAGGAGGTGTGGCCT  942

seq1  AGTTGGAGTAGGCGTGGCCTTATTGGGGTGGGTTTCTGGGTTTCAAAACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGAGTAGGCGTGGCCTTATTGGGGTGGGTTTCTGGGTTTCAAAACC  992

seq1  TTGAGCCAATCCCAGTGTCTCTCTTCCTTTTGCCTGTGGATCTGGATGTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCAATCCCAGTGTCTCTCTTCCTTTTGCCTGTGGATCTGGATGTA  1042

seq1  GAACTCTCAGCTACTTCTTCAGCACCATGTCTGCTTTTGGATGCTGAATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTCAGCTACTTCTTCAGCACCATGTCTGCTTTTGGATGCTGAATT  1092

seq1  C  1101
      |
seq2  C  1093

seq1: chrX_100763752_100763879
seq2: B6Ng01-097A06.g_73_200

seq1  AGCCTCTACTCCTGGGTCAATACTGACAAACTATTGTGCTTATGCATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTACTCCTGGGTCAATACTGACAAACTATTGTGCTTATGCATTCT  50

seq1  CACTGGGAAACAATCCCATGCCTTGGGGCCTTTACCACAGGGATTTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGAAACAATCCCATGCCTTGGGGCCTTTACCACAGGGATTTTTGT  100

seq1  TTGTTTGCGGGGGTGGTGGTGGGGGAGG  128
      ||||||||||||||||||||||||||||
seq2  TTGTTTGCGGGGGTGGTGGTGGGGGAGG  128