BAC Information

Click to search

BAC

Clone NameB6Ng01-097F16
ChromosomeX (Build37)
Map Location 39,590,538 - 39,705,512
singlet/doubletdoublet
Overlap geneStag2
Upstream geneLOC385344, Gria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4
Downstream geneLOC100039899, Sh2d1a, Odz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097F16.bB6Ng01-097F16.g
ACCDH907753DH907754
length1,0051,072
definitionDH907753|Mus musculus domesticus DNA, BAC clone: B6Ng01-097F16, 5' end.DH907754|Mus musculus domesticus DNA, BAC clone: B6Ng01-097F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,704,881 - 39,705,512)(39,590,538 - 39,591,609)
sequence
gaattcactctgtatactaggctggcctcaaactcagaaatccacctgcc
tttcctcctgagtgctgggattaaaggcatgtgccaccaccacccggctt
gaaaatcatttctagctcactcaattaatatcataccaaagatactataa
gaaagctgctgaaggatatccttcgtgaacatacaacagataatcctccc
agaaatattgacttgtcacatccagcaatagttataaaagggcattaatt
cacagtcaaataaaatttatcctaagaacacaagcctgattaaaatttta
aaaatcactcagtataatttaccatgtcatcaaactttaaaattaaaaac
catatagccatctcaatagatgcagaaaatacaactgacaaaataaagat
taatttgtgatattttaaaactctcagaaaattaagaattgaaaaatatc
tatgaacaacccacaaataatatcacacttaaactttcttcctctaaggt
accaaagaaaggacaaggtgtctgctcttgcgaattcagtttgacattgt
actggtagttctagccagggaaatgaagcaaaaaagaatatgagttgata
tagaagacaaaagatgtgaattggcatagaaaaaataaggttgttcttat
tcatagatgtcatgatcacctccataaaggatcccagctagtagagtgct
tggtgtttgccttgcttatgcaatcctcagaaccaaaaaaaaaaaaaaaa
atgttgctgcaagtaacaaataagttatcaaagtcataagatataaggtc
aatataaaagtcaaataatatcaattagaagttaaaaatcaacaaacagt
atcagtttctttttttttccccgcctccctctggtttagtctttttttgt
ttctttgtttgtttgtttgggttttttgttttttttcaattttttattag
tatttacttcatttacatttcaaatgctatctcgaaagtccctataccct
ccccc
gaattctgaatgaagcagatgctggttcaggataatgaagtaattcctat
tttcagcgttcaaattttaataatttattgagaagttcacaaattccggc
aactccgtagaatttcaaatgtttgattgtaaaccaccaaagtgcatttt
tatattgtgacatgcaaatatatgtatatctctgtgtaacaaaatttcat
gaaataatacttaaccagttttatgatacaatctgtattttgttctattt
ctgttttcgttactccttttttaattatttaatcatcttttttgcagtgc
cgtggaatgaacccagggcattgctaggcaagtgctctacactgagctac
acccctagcccctagttctgtttttttttttttttttttttttactattc
ttaattttgttttatctctgtttttctaattatgggtagcaaattagaat
tctgaactgatgatctttgcctcatgtcccacaacatggagtaagttaaa
ataagttaatatcattgatatgcaagcaccaaaagatagattttatgtgc
ttaactatttctcttcctatccaaagcaagatttgaataattgtcctgaa
cttttaaaaataaattagtatgtatttgtttatattggtggttttgtata
attatctattttcatccacgtgtgtcaaatgcttggcatgtctcttttcc
ctcctggtatatccattagttcttgcagatcctgttgcttctatctcagg
tcctgtattcacatatgattttacatacttaacagaatatgtagaattca
caaggggagagaaaatatagaatattttgcttttctgaagttttcatttt
gcatcgtgtctccaattgaattcattttcgtgcgtgtagtatccctttca
ttcttttgtctgagaaactttttggatcccagactgattctttagctagt
tttcatttcttgagggagctttatactgatttccatagttcttatatttg
gttactcttctttatattggaggcattttgataagggttagatagaattt
caggcttacttgttggtctttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_39704881_39705512
seq2: B6Ng01-097F16.b_47_678 (reverse)

seq1  TTTCTATGCCAATTCACATCTTTTGTCTTCTATATCAACTCATATTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATGCCAATTCACATCTTTTGTCTTCTATATCAACTCATATTCTTT  50

seq1  TTTGCTTCATTTCCCTGGCTAGAACTACCAGTACAATGTCAAACTGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCATTTCCCTGGCTAGAACTACCAGTACAATGTCAAACTGAATT  100

seq1  CGCAAGAGCAGACACCTTGTCCTTTCTTTGGTACCTTAGAGGAAGAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAGAGCAGACACCTTGTCCTTTCTTTGGTACCTTAGAGGAAGAAAGT  150

seq1  TTAAGTGTGATATTATTTGTGGGTTGTTCATAGATATTTTTCAATTCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGTGATATTATTTGTGGGTTGTTCATAGATATTTTTCAATTCTTA  200

seq1  ATTTTCTGAGAGTTTTAAAATATCACAAATTAATCTTTATTTTGTCAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGAGAGTTTTAAAATATCACAAATTAATCTTTATTTTGTCAGTT  250

seq1  GTATTTTCTGCATCTATTGAGATGGCTATATGGTTTTTAATTTTAAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTCTGCATCTATTGAGATGGCTATATGGTTTTTAATTTTAAAGTT  300

seq1  TGATGACATGGTAAATTATACTGAGTGATTTTTAAAATTTTAATCAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACATGGTAAATTATACTGAGTGATTTTTAAAATTTTAATCAGGCT  350

seq1  TGTGTTCTTAGGATAAATTTTATTTGACTGTGAATTAATGCCCTTTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTTAGGATAAATTTTATTTGACTGTGAATTAATGCCCTTTTATA  400

seq1  ACTATTGCTGGATGTGACAAGTCAATATTTCTGGGAGGATTATCTGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGCTGGATGTGACAAGTCAATATTTCTGGGAGGATTATCTGTTGT  450

seq1  ATGTTCACGAAGGATATCCTTCAGCAGCTTTCTTATAGTATCTTTGGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCACGAAGGATATCCTTCAGCAGCTTTCTTATAGTATCTTTGGTAT  500

seq1  GATATTAATTGAGTGAGCTAGAAATGATTTTCAAGCCGGGTGGTGGTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAATTGAGTGAGCTAGAAATGATTTTCAAGCCGGGTGGTGGTGGC  550

seq1  ACATGCCTTTAATCCCAGCACTCAGGAGGAAAGGCAGGTGGATTTCTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCTTTAATCCCAGCACTCAGGAGGAAAGGCAGGTGGATTTCTGAG  600

seq1  TTTGAGGCCAGCCTAGTATACAGAGTGAATTC  632
      ||||||||||||||||||||||||||||||||
seq2  TTTGAGGCCAGCCTAGTATACAGAGTGAATTC  632

seq1: chrX_39590538_39591609
seq2: B6Ng01-097F16.g_69_1140

seq1  GAATTCTGAATGAAGCAGATGCTGGTTCAGGATAATGAAGTAATTCCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAATGAAGCAGATGCTGGTTCAGGATAATGAAGTAATTCCTAT  50

seq1  TTTCAGCGTTCAAATTTTAATAATTTATTGAGAAGTTCACAAATTCCGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCGTTCAAATTTTAATAATTTATTGAGAAGTTCACAAATTCCGGC  100

seq1  AACTCCGTAGAATTTCAAATGTTTGATTGTAAACCACCAAAGTGCATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCGTAGAATTTCAAATGTTTGATTGTAAACCACCAAAGTGCATTTT  150

seq1  TATATTGTGACATGCAAATATATGTATATCTCTGTGTAACAAAATTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGTGACATGCAAATATATGTATATCTCTGTGTAACAAAATTTCAT  200

seq1  GAAATAATACTTAACCAGTTTTATGATACAATCTGTATTTTGTTCTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATACTTAACCAGTTTTATGATACAATCTGTATTTTGTTCTATTT  250

seq1  CTGTTTTCGTTACTCCTTTTTTAATTATTTAATCATCTTTTTTGCAGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTCGTTACTCCTTTTTTAATTATTTAATCATCTTTTTTGCAGTGC  300

seq1  CGTGGAATGAACCCAGGGCATTGCTAGGCAAGTGCTCTACACTGAGCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAATGAACCCAGGGCATTGCTAGGCAAGTGCTCTACACTGAGCTAC  350

seq1  ACCCCTAGCCCCTAGTTCTGTTTTTTTTTTTTTTTTTTTTTTTACTATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTAGCCCCTAGTTCTGTTTTTTTTTTTTTTTTTTTTTTTACTATTC  400

seq1  TTAATTTTGTTTTATCTCTGTTTTTCTAATTATGGGTAGCAAATTAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTGTTTTATCTCTGTTTTTCTAATTATGGGTAGCAAATTAGAAT  450

seq1  TCTGAACTGATGATCTTTGCCTCATGTCCCACAACATGGAGTAAGTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACTGATGATCTTTGCCTCATGTCCCACAACATGGAGTAAGTTAAA  500

seq1  ATAAGTTAATATCATTGATATGCAAGCACCAAAAGATAGATTTTATGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTAATATCATTGATATGCAAGCACCAAAAGATAGATTTTATGTGC  550

seq1  TTAACTATTTCTCTTCCTATCCAAAGCAAGATTTGAATAATTGTCCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTATTTCTCTTCCTATCCAAAGCAAGATTTGAATAATTGTCCTGAA  600

seq1  CTTTTAAAAATAAATTAGTATGTATTTGTTTATATTGGTGGTTTTGTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAAATAAATTAGTATGTATTTGTTTATATTGGTGGTTTTGTATA  650

seq1  ATTATCTATTTTCATCCACGTGTGTCAAATGCTTGGCATGTCTCTTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTATTTTCATCCACGTGTGTCAAATGCTTGGCATGTCTCTTTTCC  700

seq1  CTCCTGGTATATCCATTAGTTCTTGCAGATCCTGTTGCTTCTATCTCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGTATATCCATTAGTTCTTGCAGATCCTGTTGCTTCTATCTCAGG  750

seq1  TCCTGTATTCACATATGATTTTACATACTTAACAGAATATGTAGAATTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTATTCACATATGATTTTACATACTTAACAGAATATGTAGAATTCA  800

seq1  CAA-GGGAGAGAAAATATAGAATA-TTTGC-TTTCTGAGGTTTTCATTTT  847
      ||| |||||||||||||||||||| ||||| ||||||| |||||||||||
seq2  CAAGGGGAGAGAAAATATAGAATATTTTGCTTTTCTGAAGTTTTCATTTT  850

seq1  GCATCGTGTCTCCAATTGAATTCATTTTCGTGCGTGTAGTATCCC-TTCA  896
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCATCGTGTCTCCAATTGAATTCATTTTCGTGCGTGTAGTATCCCTTTCA  900

seq1  TTCTTTTGTCTGAGGAAAACTTTTTGGATCCCCAGACTGATTCTTTAGCT  946
      ||||||||||||||  ||||||||||||| ||||||||||||||||||||
seq2  TTCTTTTGTCTGAG--AAACTTTTTGGAT-CCCAGACTGATTCTTTAGCT  947

seq1  AGTTTTCATTTCTTGAGGAGCCTCTATACTGATTTCCATAGTTCTTATAT  996
      ||||||||||||||||||   || ||||||||||||||||||||||||||
seq2  AGTTTTCATTTCTTGAGGGAGCTTTATACTGATTTCCATAGTTCTTATAT  997

seq1  TTGTTAACTCTTCTTATAATTGAAGCAATTTTGATTAGGGTTAGATAGAA  1046
      ||| | |||||||||   |||| ||  |||||||| ||||||||||||||
seq2  TTGGTTACTCTTCTTTATATTGGAGGCATTTTGATAAGGGTTAGATAGAA  1047

seq1  TTTCAGTCTTAACTTGTCTGTCTTTG  1072
      |||||| ||| ||||||  |||||||
seq2  TTTCAGGCTT-ACTTGTTGGTCTTTG  1072