BAC Information

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BAC

Clone NameB6Ng01-097N09
ChromosomeX (Build37)
Map Location 93,696,720 - 93,908,551
singlet/doubletdoublet
Overlap geneHeph
Upstream geneLOC668202, AK129302, A130028J20Rik, 1700010D01Rik, Las1l, Msn, Psmb7-ps1, LOC668221, Vsig4, B230358A15Rik
Downstream geneGpr165, LOC675824, LOC668234, EG668236, LOC668238, Pgr15l, Eda2r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097N09.bB6Ng01-097N09.g
ACCDH908098DH908099
length7391,091
definitionDH908098|Mus musculus domesticus DNA, BAC clone: B6Ng01-097N09, 5' end.DH908099|Mus musculus domesticus DNA, BAC clone: B6Ng01-097N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,696,720 - 93,697,458)(93,907,459 - 93,908,551)
sequence
gaattcagttcctgtttatactacctacaagcatggcatgagcaatcccc
ttcacttgactgtatgtttaaccatcttaggtcagaaatgaaaacctcag
aaggacctttgccaacttgctaatcacttcgctttaaccactctccttat
ctgtgcagattcagcttcccctcctttcttccttccctacttccttcctt
ctcatttcctctcttctctgcgcctcctctcttctcttctcccatgttct
caacagtaattccatcctcctttctttatgaagaaatttgactcaaatgc
tttttatttatttctcagatcccagtaatctcaaagcattttataacaca
cagaaattttcttcagcccctagggtgtattctttttccagccagtaggt
ggcaagagtgattgtaagaaagtttacccatcatcaccacaatctggact
gcacttttatttttttaactttcatttagttgtgtaaactcttactatat
ttaaaatagaattgctttaaaaagtaattctttgtaacaatttaataatt
tcttcatggatgtcaactttacaagcacaacattaagctatattctcctc
acatatcttgtttcccatctacctagagcattttcttggctggggagagt
tgttagcaaattataaacatcagttactacagtttcaagaagcaagagga
gcatgtgctttcagtaaacgggggttggggtggggagtg
gaattcagcatctcctctcccttgctttctgtttcttttctgcatcatcg
ccctaggcaccggctagctgtgacacaggtactgaatggaggctgtggag
actgcagtagcatctggaccagcaagccagtcagctgcctgggaagagtg
gtcgatatgaaagacctgcacagatgtgggggtttcacagagagaacaag
gcagggtgcagctggagaaacaggaggggagtttagctgatgggaagcaa
gaaagggtcacctgggagtgagctcaacactgtgttctgctttttctggc
ctcagaactgcatgccaccgaccagggaactctgctcctggcctctggaa
acaggacactcatttgacacccaggaagtacacttttggaaactagactg
tgtcagattagtcaactgtctaaagggtgagtccctcgggaagatttagg
atttgggaagctctgcatatcgatgctgctaaaatctaaagcagtaggga
gcgggagatatagctcagttcttgagggttgtagtgaaaatactctagaa
ctggtggtctcagactagcctttcctttggaaatttttagctacatttac
atttcagaggtgttagagtcataaccaaaacaactaagctgcagacctag
aaaggatagaagagacccatagtgtgtcatttacttatcatctgccatag
agaaacaggcatatataggttatagaaggtcagaggcaaaatgattgaag
caccagaactaaaaatgagaaagggcattcagagacctcggctatgcagc
aagcactctgtttaagaaatcctggtgtttgttacagtcgatctcgtgac
ttctagccacccttttactgcctggaagctaactgctattctggaggagg
taaaaggaaaacacctgatttcaaggattgtcaataattacttgattagg
cataagcaggatccatttattgccaaactattatcatcattgttccagtc
atcaaagctcctcaaaggagcatggacgcagaacagcaacctcttgggta
tttgcacttgaactaagaaagtagaaagattgaggcagatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_93696720_93697458
seq2: B6Ng01-097N09.b_46_784

seq1  GAATTCAGTTCCTGTTTATACTACCTACAAGCATGGCATGAGCAATCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCTGTTTATACTACCTACAAGCATGGCATGAGCAATCCCC  50

seq1  TTCACTTGACTGTATGTTTAACCATCTTAGGTCAGAAATGAAAACCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTGACTGTATGTTTAACCATCTTAGGTCAGAAATGAAAACCTCAG  100

seq1  AAGGACCTTTGCCAACTTGCTAATCACTTCGCTTTAACCACTCTCCTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCTTTGCCAACTTGCTAATCACTTCGCTTTAACCACTCTCCTTAT  150

seq1  CTGTGCAGATTCAGCTTCCCCTCCTTTCTTCCTTCCCTACTTCCTTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAGATTCAGCTTCCCCTCCTTTCTTCCTTCCCTACTTCCTTCCTT  200

seq1  CTCATTTCCTCTCTTCTCTGCGCCTCCTCTCTTCTCTTCTCCCATGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTCCTCTCTTCTCTGCGCCTCCTCTCTTCTCTTCTCCCATGTTCT  250

seq1  CAACAGTAATTCCATCCTCCTTTCTTTATGAAGAAATTTGACTCAAATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTAATTCCATCCTCCTTTCTTTATGAAGAAATTTGACTCAAATGC  300

seq1  TTTTTATTTATTTCTCAGATCCCAGTAATCTCAAAGCATTTTATAACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTATTTCTCAGATCCCAGTAATCTCAAAGCATTTTATAACACA  350

seq1  CAGAAATTTTCTTCAGCCCCTAGGGTGTATTCTTTTTCCAGCCAGTAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATTTTCTTCAGCCCCTAGGGTGTATTCTTTTTCCAGCCAGTAGGT  400

seq1  GGCAAGAGTGATTGTAAGAAAGTTTACCCATCATCACCACAATCTGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGAGTGATTGTAAGAAAGTTTACCCATCATCACCACAATCTGGACT  450

seq1  GCACTTTTATTTTTTTAACTTTCATTTAGTTGTGTAAACTCTTACTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTTATTTTTTTAACTTTCATTTAGTTGTGTAAACTCTTACTATAT  500

seq1  TTAAAATAGAATTGCTTTAAAAAGTAATTCTTTGTAACAATTTAATAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAGAATTGCTTTAAAAAGTAATTCTTTGTAACAATTTAATAATT  550

seq1  TCTTCATGGATGTCAACTTTACAAGCACAACATTAAGCTATATTCTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGGATGTCAACTTTACAAGCACAACATTAAGCTATATTCTCCTC  600

seq1  ACATATCTTGTTTCCCATCTACCTAGAGCATTTTCTTGGCTGGGGAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCTTGTTTCCCATCTACCTAGAGCATTTTCTTGGCTGGGGAGAGT  650

seq1  TGTTAGCAAATTATAAACATCAGTTACTACAGTTTCAAGAAGCAAGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCAAATTATAAACATCAGTTACTACAGTTTCAAGAAGCAAGAGGA  700

seq1  GCATGTGCTTTCAGTAAACGGGGGTTGGGGTGGGGAGTG  739
      |||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGCTTTCAGTAAACGGGGGTTGGGGTGGGGAGTG  739

seq1: chrX_93907459_93908551
seq2: B6Ng01-097N09.g_71_1161 (reverse)

seq1  GATCTGCCTCAATTCTTTCTTACTTTCTTAGTTC-AGTGCAAATACCCAG  49
      |||||||||||| |||||| |||||||||||||| |||||||||||||| 
seq2  GATCTGCCTCAA-TCTTTC-TACTTTCTTAGTTCAAGTGCAAATACCCAA  48

seq1  GAGTTTGCTTGTCTGCGTCATGGCTCCTTTG-TGAGCTTTGATGACTGG-  97
      ||| |||||  ||||||||   |||||||||  |||||||||||||||| 
seq2  GAGGTTGCTGTTCTGCGTCCATGCTCCTTTGAGGAGCTTTGATGACTGGA  98

seq1  ACAATGATGATAATAGTTTTGGCACTAAATTGATTCCTGCTTATGCCTTA  147
      |||||||||||||||| ||||||| ||||| || ||||||||||||| ||
seq2  ACAATGATGATAATAG-TTTGGCAATAAATGGA-TCCTGCTTATGCC-TA  145

seq1  ATC-AGTAATTATTGAC-ATCCTTGAAATCAGGTGTTTTTCTTTTTACTT  195
      ||| ||||||||||||| ||||||||||||||||| ||||| |||||| |
seq2  ATCAAGTAATTATTGACAATCCTTGAAATCAGGTG-TTTTCCTTTTACCT  194

seq1  CCTCCAGAATAGCAGTTTAGCTTCCAGGCAGT-AAAGGGTGGCTAGAAAG  244
      ||||||||||||||| |||||||||||||||| ||||||||||||| |||
seq2  CCTCCAGAATAGCAG-TTAGCTTCCAGGCAGTAAAAGGGTGGCTAG-AAG  242

seq1  TCACGAGATCGACTGTAACAAACACCAGGATTTCTTAAACAGAGTGCTTG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGAGATCGACTGTAACAAACACCAGGATTTCTTAAACAGAGTGCTTG  292

seq1  CTGCATAGCCGAGGTCTCTGAATGCCCTTTCTCATTTTTAGTTCTGGTGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATAGCCGAGGTCTCTGAATGCCCTTTCTCATTTTTAGTTCTGGTGC  342

seq1  TTCAATCATTTTGCCTCTGACCTTCTATAACCTATATATGCCTGTTTCTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCATTTTGCCTCTGACCTTCTATAACCTATATATGCCTGTTTCTC  392

seq1  TATGGCAGATGATAAGTAAATGACACACTATGGGTCTCTTCTATCCTTTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCAGATGATAAGTAAATGACACACTATGGGTCTCTTCTATCCTTTC  442

seq1  TAGGTCTGCAGCTTAGTTGTTTTGGTTATGACTCTAACACCTCTGAAATG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTGCAGCTTAGTTGTTTTGGTTATGACTCTAACACCTCTGAAATG  492

seq1  TAAATGTAGCTAAAAATTTCCAAAGGAAAGGCTAGTCTGAGACCACCAGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTAGCTAAAAATTTCCAAAGGAAAGGCTAGTCTGAGACCACCAGT  542

seq1  TCTAGAGTATTTTCACTACAACCCTCAAGAACTGAGCTATATCTCCCGCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGTATTTTCACTACAACCCTCAAGAACTGAGCTATATCTCCCGCT  592

seq1  CCCTACTGCTTTAGATTTTAGCAGCATCGATATGCAGAGCTTCCCAAATC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTGCTTTAGATTTTAGCAGCATCGATATGCAGAGCTTCCCAAATC  642

seq1  CTAAATCTTCCCGAGGGACTCACCCTTTAGACAGTTGACTAATCTGACAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCTTCCCGAGGGACTCACCCTTTAGACAGTTGACTAATCTGACAC  692

seq1  AGTCTAGTTTCCAAAAGTGTACTTCCTGGGTGTCAAATGAGTGTCCTGTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGTTTCCAAAAGTGTACTTCCTGGGTGTCAAATGAGTGTCCTGTT  742

seq1  TCCAGAGGCCAGGAGCAGAGTTCCCTGGTCGGTGGCATGCAGTTCTGAGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGGCCAGGAGCAGAGTTCCCTGGTCGGTGGCATGCAGTTCTGAGG  792

seq1  CCAGAAAAAGCAGAACACAGTGTTGAGCTCACTCCCAGGTGACCCTTTCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAAAGCAGAACACAGTGTTGAGCTCACTCCCAGGTGACCCTTTCT  842

seq1  TGCTTCCCATCAGCTAAACTCCCCTCCTGTTTCTCCAGCTGCACCCTGCC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCCATCAGCTAAACTCCCCTCCTGTTTCTCCAGCTGCACCCTGCC  892

seq1  TTGTTCTCTCTGTGAAACCCCCACATCTGTGCAGGTCTTTCATATCGACC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCTCTGTGAAACCCCCACATCTGTGCAGGTCTTTCATATCGACC  942

seq1  ACTCTTCCCAGGCAGCTGACTGGCTTGCTGGTCCAGATGCTACTGCAGTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCCCAGGCAGCTGACTGGCTTGCTGGTCCAGATGCTACTGCAGTC  992

seq1  TCCACAGCCTCCATTCAGTACCTGTGTCACAGCTAGCCGGTGCCTAGGGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGCCTCCATTCAGTACCTGTGTCACAGCTAGCCGGTGCCTAGGGC  1042

seq1  GATGATGCAGAAAAGAAACAGAAAGCAAGGGAGAGGAGATGCTGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGCAGAAAAGAAACAGAAAGCAAGGGAGAGGAGATGCTGAATTC  1091