BAC Information

Click to search

BAC

Clone NameB6Ng01-098G14
ChromosomeX (Build37)
Map Location 158,579,333 - 158,678,369
singlet/doubletdoublet
Overlap geneNhs
Upstream geneScml2, LOC414364, Prkaca-ps1, Rai2, Gm47
Downstream geneReps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098G14.bB6Ng01-098G14.g
ACCDH908512DH908513
length769985
definitionDH908512|Mus musculus domesticus DNA, BAC clone: B6Ng01-098G14, 5' end.DH908513|Mus musculus domesticus DNA, BAC clone: B6Ng01-098G14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,579,333 - 158,580,095)(158,677,277 - 158,678,369)
sequence
gaattcactttgtagatcacgttggcctctaactcagaaatctgcctgcc
tctgccttccaagtgctgggattaaaggcgtgcgccaccatgcccggctt
tgaaatattttttaaaagggtcatttgttatacagtgggttcatttgttt
ctgaattgaggtcttccacagttcatttataccaaacttcaaacaaaatc
ataggatgcagaaagatgaacactgagctaaaaaagaaatccatgtatcc
atgaggtgaatctttgagtttaaatagacagacaggtagatagatagatg
gacagatgaatggatggatgttccagctatgggagatggtttactttaag
catttggtgtagtcctagaaacaattgggattattttttcaggaagcata
taaaagctaactagctacagctagacacatagagctatcatcactttctc
cagcaactggccttaaccttacccacagtcttgtgcacatatttgtgtgt
gactcaagggtcttttttctaataagacatcctagcatcagacgttgtta
gcatgaaaagtcaatcctggatattgccttcgtgtttgattggacttttg
gattttgtttgtgcttgttcgtgcttcccctatgacaaaattaggaagta
gaatgcttttttcagtgaccatatattgggaaatatggaaaaaaagaatg
ctttgcatagatgaattaggaagctgggtgaatagggggggtacatttat
tttgaaaacagagccacct
gaattcagaagcagaggtgttgcttgtgaaaagttcaaggttgggagatg
tacagcaaagccttgggtatgaagcaagaaacattgcatctctgctctcc
aggcatttgctctgtctgtcagcgattccaaaagtcagaaaacagtgtta
tcagtggcagggtaaccattaatgcaaattatttttttggtattatttcc
tttttagggagagcgagccaagcacttttgccatcaaacatgggctattt
atggtcacatttgctgagagcctctggggctgtcatgtgattctaagcag
aaaccatagtccgtcatacagagccaagaacatggagatcatatacggga
aaccaggggttggggctgaaggataaaagctgcagccaaaactctgctga
aactgctaaatagtggctaatttaggagggaagcatcagcacctccagtg
gcggagtttgatttatcatccctaacttgtccaaaaacataaaaaaaaat
catccaaaatgtttggaccttcattcctcaacataagtcactattcatct
ctttcttggggcttttggaaattgagcgaggccacttcctaaggaaaggg
acattgcatcatagggcttggttgttctttcttgttttgccagaaggttt
tttttttttgttgttgtttttttttttgtacttaaatcataaactttatt
gtatacattatctactttacatatcaagccaagagtttctctttgctgtg
ataaaaaccacattcaaaagcaatatgggagagggaaggggttataccct
gtagtccagggaagtttcttgagggcagaaactcaaggcaggaactctag
aagcgggaattgatgcagaggccatggaaagaacactgcttaatggcttg
ctcagggttgcttggtgttgtacatcttgctttctttttttttttaaatt
ttttataggaattagctcatttacattttccaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_158579333_158580095
seq2: B6Ng01-098G14.b_29_798

seq1  GGAATTCACTTTGTAGATCACGTTGGCCTCGAACTCAGAAATCTGCCTGC  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGAATTCACTTTGTAGATCACGTTGGCCTCTAACTCAGAAATCTGCCTGC  50

seq1  CTCTGCCTTCCAAGTGCTGGGATTAAAGGCGTGCGCCACCATGCCCGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTTCCAAGTGCTGGGATTAAAGGCGTGCGCCACCATGCCCGGCT  100

seq1  TTGAAATATTTTTTAAAAGGGTCATTTGTTATACAGTGGGTTCATTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATATTTTTTAAAAGGGTCATTTGTTATACAGTGGGTTCATTTGTT  150

seq1  TCTGAATTGAGGTCTTCCACAGTTCATTTATACCAAACTTCAAACAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATTGAGGTCTTCCACAGTTCATTTATACCAAACTTCAAACAAAAT  200

seq1  CATAGGATGCAGAAAGATGAACACTGAGCTAAAAAAGAAATCCATGTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGATGCAGAAAGATGAACACTGAGCTAAAAAAGAAATCCATGTATC  250

seq1  CATGAGGTGAATCTTTGAGTTTAAATAGACAGACAGGTAGATAGATAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGTGAATCTTTGAGTTTAAATAGACAGACAGGTAGATAGATAGAT  300

seq1  GGACAGATGAATGGATGGATGTTCCAGCTATGGGAGATGGTTTACTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGATGAATGGATGGATGTTCCAGCTATGGGAGATGGTTTACTTTAA  350

seq1  GCATTTGGTGTAGTCCTAGAAACAATTGGGATTATTTTTTCAGGAAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGGTGTAGTCCTAGAAACAATTGGGATTATTTTTTCAGGAAGCAT  400

seq1  ATAAAAGCTAACTAGCTACAGCTAGACACATAGAGCTATCATCACTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGCTAACTAGCTACAGCTAGACACATAGAGCTATCATCACTTTCT  450

seq1  CCAGCAACTGGCCTTAACCTTACCCACAGTCTTGTGCACATATTTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAACTGGCCTTAACCTTACCCACAGTCTTGTGCACATATTTGTGTG  500

seq1  TGACTCAAGGGTCTTTTTTCTAAGAAGACATCCTAGCATCAGACGTTGTT  550
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGACTCAAGGGTCTTTTTTCTAATAAGACATCCTAGCATCAGACGTTGTT  550

seq1  AGCATGAAAAGTCAATCCTGGATATTGCCTTCGTGTTTGATTGGACTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGAAAAGTCAATCCTGGATATTGCCTTCGTGTTTGATTGGACTTTT  600

seq1  GGATTTTGTTTGTGCTTGTTCGTGCTTCCCCTATGAC-AAATTAGGAAGT  649
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGATTTTGTTTGTGCTTGTTCGTGCTTCCCCTATGACAAAATTAGGAAGT  650

seq1  AGAATGC-TATTTCAGTGACCATATATT-GGAAATATGG-AAAAAAGAAT  696
      ||||||| | |||||||||||||||||| |||||||||| ||||||||||
seq2  AGAATGCTTTTTTCAGTGACCATATATTGGGAAATATGGAAAAAAAGAAT  700

seq1  GCTTTGCATAGATGAATAAGG-AGCTGGGTGAATAGGGGGGGTACA--TA  743
      ||||||||||||||||| ||| ||||||||||||||||||||||||  ||
seq2  GCTTTGCATAGATGAATTAGGAAGCTGGGTGAATAGGGGGGGTACATTTA  750

seq1  AATAGGAAACAGAGCCACAT  763
        | | |||||||||||| |
seq2  TTTTGAAAACAGAGCCACCT  770

seq1: chrX_158677277_158678369
seq2: B6Ng01-098G14.g_68_1052 (reverse)

seq1  CATTGGACTTGCAAACTTTATATGCTCCAGTACAGAGGAATGCCAGGGCC  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAAAAGGGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGATATGGGGG  100
                                                        
seq2  --------------------------------------------------  0

seq1  ACTTTTGGTATAGCATTGG-AAATGTAAATGAGCTAAATACCTAATAAAA  149
                   |||||| ||||||||||||||| ||| ||| ||||||
seq2  -------------CATTGGAAAATGTAAATGAGCT-AATTCCT-ATAAAA  35

seq1  AAATTAAAAAAAAAAAGAAAGCAAGATGTACAAACAACAAGCAAACCATG  199
      || |||||||||||||||||||||||||||| |||| ||||| |||| ||
seq2  AATTTAAAAAAAAAAAGAAAGCAAGATGTAC-AACACCAAGC-AACCCTG  83

seq1  AGCAAGCCAGTAAGCAGTGTTCTTTCCATGGCCTCTGCATCAATTCCCGC  249
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCATTAAGCAGTGTTCTTTCCATGGCCTCTGCATCAATTCCCGC  133

seq1  TTCTAG-GTTCCTGCCTTGAGTTTCTGCCCTCAAGAAACTTCCCTGGACT  298
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAGTTCCTGCCTTGAGTTTCTGCCCTCAAGAAACTTCCCTGGACT  183

seq1  ACAGGGTATAA-CCCTTCCCTCT-CCATATTGCTTTTGAATGTGGTTTTT  346
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  ACAGGGTATAACCCCTTCCCTCTCCCATATTGCTTTTGAATGTGGTTTTT  233

seq1  ATCACAGC-AAGAGAAACTCTTGGC-TGATATGTAAAGTAGATAATGTAT  394
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  ATCACAGCAAAGAGAAACTCTTGGCTTGATATGTAAAGTAGATAATGTAT  283

seq1  ACAATAAAG-TTATGATTTAAGTAC-AAAAAAAAAACAACAAC-AAAAAA  441
      ||||||||| ||||||||||||||| ||||||||||||||||| ||||||
seq2  ACAATAAAGTTTATGATTTAAGTACAAAAAAAAAAACAACAACAAAAAAA  333

seq1  AAAAACCTTCTGGCAAAACAAGAAAGAACAACCAAGCCCTATGATGCAAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCTTCTGGCAAAACAAGAAAGAACAACCAAGCCCTATGATGCAAT  383

seq1  GTCCCTTTCCTTAGGAAGTGGCCTCGCTCAATTTCCAAAAGCCCCAAGAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTTCCTTAGGAAGTGGCCTCGCTCAATTTCCAAAAGCCCCAAGAA  433

seq1  AGAGATGAATAGTGACTTATGTTGAGGAATGAAGGTCCAAACATTTTGGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGAATAGTGACTTATGTTGAGGAATGAAGGTCCAAACATTTTGGA  483

seq1  TGATTTTTTTTTATGTTTTTGGACAAGTTAGGGATGATAAATCAAACTCC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTTTTTATGTTTTTGGACAAGTTAGGGATGATAAATCAAACTCC  533

seq1  GCCACTGGAGGTGCTGATGCTTCCCTCCTAAATTAGCCACTATTTAGCAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGGAGGTGCTGATGCTTCCCTCCTAAATTAGCCACTATTTAGCAG  583

seq1  TTTCAGCAGAGTTTTGGCTGCAGCTTTTATCCTTCAGCCCCAACCCCTGG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCAGAGTTTTGGCTGCAGCTTTTATCCTTCAGCCCCAACCCCTGG  633

seq1  TTTCCCGTATATGATCTCCATGTTCTTGGCTCTGTATGACGGACTATGGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCGTATATGATCTCCATGTTCTTGGCTCTGTATGACGGACTATGGT  683

seq1  TTCTGCTTAGAATCACATGACAGCCCCAGAGGCTCTCAGCAAATGTGACC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTAGAATCACATGACAGCCCCAGAGGCTCTCAGCAAATGTGACC  733

seq1  ATAAATAGCCCATGTTTGATGGCAAAAGTGCTTGGCTCGCTCTCCCTAAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAGCCCATGTTTGATGGCAAAAGTGCTTGGCTCGCTCTCCCTAAA  783

seq1  AAGGAAATAATACCAAAAAAATAATTTGCATTAATGGTTACCCTGCCACT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATAATACCAAAAAAATAATTTGCATTAATGGTTACCCTGCCACT  833

seq1  GATAACACTGTTTTCTGACTTTTGGAATCGCTGACAGACAGAGCAAATGC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACACTGTTTTCTGACTTTTGGAATCGCTGACAGACAGAGCAAATGC  883

seq1  CTGGAGAGCAGAGATGCAATGTTTCTTGCTTCATACCCAAGGCTTTGCTG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGCAGAGATGCAATGTTTCTTGCTTCATACCCAAGGCTTTGCTG  933

seq1  TACATCTCCCAACCTTGAACTTTTCACAAGCAACACCTCTGCTTCTGAAT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTCCCAACCTTGAACTTTTCACAAGCAACACCTCTGCTTCTGAAT  983

seq1  TC  1093
      ||
seq2  TC  985