BAC Information

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BAC

Clone NameB6Ng01-099D21
ChromosomeX (Build37)
Map Location 151,874,631 - 151,977,936
singlet/doubletdoublet
Overlap geneLOC667394
Upstream gene4930542N07Rik, EG434881, LOC100040899, LOC667331, LOC100040925, LOC100040937, Magea6, Magea3, LOC626034, Magea8, Magea2, Magea5, Magea1, 1700042B14Rik, LOC245676, Amd-ps1, LOC667369, Sat1, Acot9, LOC667383, Prdx4
Downstream genePtchd1, 4930503H13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099D21.bB6Ng01-099D21.g
ACCDH909090DH909091
length1,1881,080
definitionDH909090|Mus musculus domesticus DNA, BAC clone: B6Ng01-099D21, 5' end.DH909091|Mus musculus domesticus DNA, BAC clone: B6Ng01-099D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,976,738 - 151,977,936)(151,874,631 - 151,875,607)
sequence
gaattcctaatgtgtctcccaaccaagaactaaccaggtccaaccctgcc
tcgcttctgagatcagatgagatcaggtacattcaggatgatatgatcat
agacaagaatttctaatctttatttaattaaacttcatttctttaccata
gtaatgttttattcttagaagaaatttggcagttggggattgtcatttat
agctactccagaatttgtaaatgctgaaatacatctctttctaaaaatat
cagatttatttttctgttgaaacttcactgatttatgttgtcttccaaga
aaatttttcttggtttctaatcaatttccaattaagttacacttcaggtt
taaatgttctgtccacaaatctttcaactaataattgccaaataaattcc
tttatgtataaaaggcaaaaatttcaaaataccttagttaaatgatatct
caacatatattaccataaaataagggtttaacatacactattatttcttt
agttagaagaaaatgaaaagcagtcatttgtttattttattacacactag
cttttatatattgaatttgctcatgtgaaaatgccatttttaataaaata
gtactctataaggaacaaagtttttataagttattttatgcaacacatac
atttctgttattatctgttaacaataccttgcatccatttacctataaaa
tattctgaattcttatgcaaaagtattgtatatttttcttaagtattctg
caaaggaagctatgaacttgtgggacatgtaaagaagaggatgtgatatt
ggataagattttaatccttcctctgcctatactggcttctacttcactac
caagataatatattccttctgatgataaaaatatgaaaaataattcttga
aattgaagaaattttgatatcttatgaaaaagtatatcttcaaaatatgg
ccactatttgatttttttttatctttagttgactgtttctgtttgacacc
aatttccagtaaatttatatgtactactgagaaaatagctatataagaat
aaataaataggacaattaaaaacaataaaaaattcataaaatctctgtat
gctttctgatttgttgcatcagcattgataatctttgtggaaccatttaa
attatccaatgttgaattgccaggatttatgaaagccc
gaattcatttttagatgatattagttatcaaccaaaaatttatctttttt
ctctctttcttctttttttgcatacaaacatccaaatgttgtagaaccat
taattgagcacactatttttcttctattgaatttcatttgcacctttgtt
gaagccatttgagtgtgtctgtatgggtctatttttggactattccatcc
tattgatcaatgtgtctatcttgttgtcaacataacaccaatttaattgc
tttatagtaagtcagttaagcaagaagtggaatgagttatttttctttga
ggagaacaactttgactaatatgattcctttactttactatacccatttt
ataattgattatttggtttctacaagtcttgctggtatttttatgggagc
ttttagtgaattaatggatgaattttggggaaattttcattttagtagta
ttgaattttataattctctagaattctatttctccatttataaacagcca
atgcattacattttcctagaggaagttgtagttaagaattcagatccttc
tgatgggtcatgcaattatacatacttaattttctaaccaaggcagtctc
tggaagcttccatcaataggttatttcattagcattgtccataatttatt
atacatatttgcttatctgttatactgtaatgaagtatcttatggtttga
tactattatagatggtattaacgattgtctagccataagtgtctttgtca
gctaaggtagttggtgacagttctctttggtcaatactttggatatctgt
agcagtgttacaggatgctttataacactggggtccccgagattgtgata
ttgaaaaaaaactggttttagttgtggtgtgactcagcccttagcacata
cctttaatccctttgactggaatacagacgtgcccttactgcacacaaac
aatgaaagtaagttagtttgtaaagagcacctatgtttgaagttactata
atgtttttttggaatggcagacatgatgactcagaggaacatttgacaga
acagatatattctcactttcacctggagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_151976738_151977936
seq2: B6Ng01-099D21.b_46_1233 (reverse)

seq1  GGGCTTTCATAAAATCTGTGCACTTCAACATTTTGATAAATTTATAATTG  50
      |||||||||||||  ||| ||| ||||||| || ||| |||||| ||| |
seq2  GGGCTTTCATAAATCCTG-GCAATTCAACA-TTGGAT-AATTTA-AATGG  46

seq1  TT-CAC-AAGATAAATCATGTGCTGGATGCAACAAATCAAGAAAGCATTA  98
      || ||| |||||  ||||  |||| ||||||||||||| |||||||||  
seq2  TTCCACAAAGAT-TATCA-ATGCT-GATGCAACAAATC-AGAAAGCAT--  90

seq1  ACAGAAGATTTTAATGAATTTTTTATTG-TTTTAATTGTTCTTATTTATT  147
      |||| ||||||| ||||||||||||||| ||||||||| || ||||||||
seq2  ACAG-AGATTTT-ATGAATTTTTTATTGTTTTTAATTG-TCCTATTTATT  137

seq1  TTTATTTCTTATATAGCTA-TTTCTCAGTAGTTACATATAAATTTACTGG  196
      |    |||||||||||||| ||||||||||| ||||||||||||||||||
seq2  T---ATTCTTATATAGCTATTTTCTCAGTAG-TACATATAAATTTACTGG  183

seq1  AAA-TGGTGTCAAACAGAAACAGTCAACTAAAGAT-AAAAAAAATCAAAT  244
      ||| ||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAATTGGTGTCAAACAGAAACAGTCAACTAAAGATAAAAAAAAATCAAAT  233

seq1  AGTGGCCATATTTTGAAGATATACTTTTTCATAAGATATCAAAATTTCTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCATATTTTGAAGATATACTTTTTCATAAGATATCAAAATTTCTT  283

seq1  CAATTTCAAGAATTATTTTTCATATTTTTATCATCAGAAGGAATATATTA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCAAGAATTATTTTTCATATTTTTATCATCAGAAGGAATATATTA  333

seq1  TCTTGGTAGTGAAGTAGAAGCCAGTATAGGCAGAGGAAGGATTAAAATCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTAGTGAAGTAGAAGCCAGTATAGGCAGAGGAAGGATTAAAATCT  383

seq1  TATCCAATATCACATCCTCTTCTTTACATGTCCCACAAGTTCATAGCTTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAATATCACATCCTCTTCTTTACATGTCCCACAAGTTCATAGCTTC  433

seq1  CTTTGCAGAATACTTAAGAAAAATATACAATACTTTTGCATAAGAATTCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAGAATACTTAAGAAAAATATACAATACTTTTGCATAAGAATTCA  483

seq1  GAATATTTTATAGGTAAATGGATGCAAGGTATTGTTAACAGATAATAACA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTTATAGGTAAATGGATGCAAGGTATTGTTAACAGATAATAACA  533

seq1  GAAATGTATGTGTTGCATAAAATAACTTATAAAAACTTTGTTCCTTATAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTATGTGTTGCATAAAATAACTTATAAAAACTTTGTTCCTTATAG  583

seq1  AGTACTATTTTATTAAAAATGGCATTTTCACATGAGCAAATTCAATATAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTATTTTATTAAAAATGGCATTTTCACATGAGCAAATTCAATATAT  633

seq1  AAAAGCTAGTGTGTAATAAAATAAACAAATGACTGCTTTTCATTTTCTTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTAGTGTGTAATAAAATAAACAAATGACTGCTTTTCATTTTCTTC  683

seq1  TAACTAAAGAAATAATAGTGTATGTTAAACCCTTATTTTATGGTAATATA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAAGAAATAATAGTGTATGTTAAACCCTTATTTTATGGTAATATA  733

seq1  TGTTGAGATATCATTTAACTAAGGTATTTTGAAATTTTTGCCTTTTATAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGATATCATTTAACTAAGGTATTTTGAAATTTTTGCCTTTTATAC  783

seq1  ATAAAGGAATTTATTTGGCAATTATTAGTTGAAAGATTTGTGGACAGAAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGAATTTATTTGGCAATTATTAGTTGAAAGATTTGTGGACAGAAC  833

seq1  ATTTAAACCTGAAGTGTAACTTAATTGGAAATTGATTAGAAACCAAGAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAACCTGAAGTGTAACTTAATTGGAAATTGATTAGAAACCAAGAAA  883

seq1  AATTTTCTTGGAAGACAACATAAATCAGTGAAGTTTCAACAGAAAAATAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTTGGAAGACAACATAAATCAGTGAAGTTTCAACAGAAAAATAA  933

seq1  ATCTGATATTTTTAGAAAGAGATGTATTTCAGCATTTACAAATTCTGGAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATATTTTTAGAAAGAGATGTATTTCAGCATTTACAAATTCTGGAG  983

seq1  TAGCTATAAATGACAATCCCCAACTGCCAAATTTCTTCTAAGAATAAAAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATAAATGACAATCCCCAACTGCCAAATTTCTTCTAAGAATAAAAC  1033

seq1  ATTACTATGGTAAAGAAATGAAGTTTAATTAAATAAAGATTAGAAATTCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTATGGTAAAGAAATGAAGTTTAATTAAATAAAGATTAGAAATTCT  1083

seq1  TGTCTATGATCATATCATCCTGAATGTACCTGATCTCATCTGATCTCAGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATGATCATATCATCCTGAATGTACCTGATCTCATCTGATCTCAGA  1133

seq1  AGCGAGGCAGGGTTGGACCTGGTTAGTTCTTGGTTGGGAGACACATTAGG  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGGCAGGGTTGGACCTGGTTAGTTCTTGGTTGGGAGACACATTAGG  1183

seq1  AATTC  1199
      |||||
seq2  AATTC  1188

seq1: chrX_151874631_151875607
seq2: B6Ng01-099D21.g_177_1145

seq1  ACTATTTTTCTTCTATTGAATTTCATTTGCACCTTTGTTGAAGCCATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTTCTTCTATTGAATTTCATTTGCACCTTTGTTGAAGCCATTTG  50

seq1  AGTGTGTCTGTATGGGTCTATTTTTGGACTATTCCATCCTATTGATCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTCTGTATGGGTCTATTTTTGGACTATTCCATCCTATTGATCAAT  100

seq1  GTGTCTATCTTGTTGTCAACATAACACCAATTTAATTGCTTTATAGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTATCTTGTTGTCAACATAACACCAATTTAATTGCTTTATAGTAAG  150

seq1  TCAGTTAAGCAAGAAGTGGAATGAGTTATTTTTCTTTGAGGAGAACAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAAGCAAGAAGTGGAATGAGTTATTTTTCTTTGAGGAGAACAACT  200

seq1  TTGACTAATATGATTCCTTTACTTTACTATACCCATTTTATAATTGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTAATATGATTCCTTTACTTTACTATACCCATTTTATAATTGATTA  250

seq1  TTTGGTTTCTACAAGTCTTGCTGGTATTTTTATGGGAGCTTTTAGTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTCTACAAGTCTTGCTGGTATTTTTATGGGAGCTTTTAGTGAAT  300

seq1  TAATGGATGAATTTTGGGGAAATTTTCATTTTAGTAGTATTGAATTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGATGAATTTTGGGGAAATTTTCATTTTAGTAGTATTGAATTTTAT  350

seq1  AATTCTCTAGAATTCTATTTCTCCATTTATAAACAGCCAATGCATTACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCTAGAATTCTATTTCTCCATTTATAAACAGCCAATGCATTACAT  400

seq1  TTTCCTAGAGGAAGTTGTAGTTAAGAATTCAGATCCTTCTGATGGGTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAGAGGAAGTTGTAGTTAAGAATTCAGATCCTTCTGATGGGTCAT  450

seq1  GCAATTATACATACTTAATTTTCTAACCAAGGCAGTCTCTGGAAGCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTATACATACTTAATTTTCTAACCAAGGCAGTCTCTGGAAGCTTCC  500

seq1  ATCAATAGGTTATTTCATTAGCATTGTCCATAATTTATTATACATATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAGGTTATTTCATTAGCATTGTCCATAATTTATTATACATATTTG  550

seq1  CTTATCTGTTATACTGTAATGAAGTATCTTATGGTTTGATACTATTATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTGTTATACTGTAATGAAGTATCTTATGGTTTGATACTATTATAG  600

seq1  ATGGTATTAACGATTGTCTAGCCATAAGTGTCTTTGTCAGCTAAGGTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATTAACGATTGTCTAGCCATAAGTGTCTTTGTCAGCTAAGGTAGT  650

seq1  TGGTGACAGTTCTCTTTGGTCAATACTTTGGATATCTGTAGCAGTGTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACAGTTCTCTTTGGTCAATACTTTGGATATCTGTAGCAGTGTTAC  700

seq1  AGGATGCTTTATAACACTGGGGTCCCCGAGATTGTGATATTGAAAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCTTTATAACACTGGGGTCCCCGAGATTGTGATATTGAAAAAAAA  750

seq1  CTGGTTTTAGTTGTGGTGTGACTCAGCCCTTAGCACATACCTTTAATCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTAGTTGTGGTGTGACTCAGCCCTTAGCACATACCTTTAATCCC  800

seq1  TTTGACTGGAATACAGACGTGCCCTTACTGCACACCAAACAATGAAAGTA  850
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  TTTGACTGGAATACAGACGTGCCCTTACTGCACA-CAAACAATGAAAGT-  848

seq1  AAGTTAGTTTGTAGAAGGGAGCACCTATGTTTGAAAGTTACTATAATG-T  899
      ||||||||||||| |   ||||||||||||||| |||||||||||||| |
seq2  AAGTTAGTTTGTAAA---GAGCACCTATGTTTG-AAGTTACTATAATGTT  894

seq1  CTTTTGGAATGGCAGACAAATGGATGACTCAGAGAAACATTTGACAGAAC  949
       |||||||||||||||||    |||||||||||| |||||||||||||||
seq2  TTTTTGGAATGGCAGACA---TGATGACTCAGAGGAACATTTGACAGAAC  941

seq1  AG-GATATTCTCAACTTTCACCTGGAGAG  977
      ||  |||||||| ||||||||||||||||
seq2  AGATATATTCTC-ACTTTCACCTGGAGAG  969