BAC Information

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BAC

Clone NameB6Ng01-099H19
ChromosomeX (Build37)2 (Build37)
Map Location 6,306,883 - 6,307,163151,778,028 - 151,778,441
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC436185, LOC668971, LOC100043936, LOC668972, Nudt11, LOC208428, AU022751, Nudt10, Bmp15, Shroom4
Downstream geneLOC100043937, Dgkk, Ccnb3, Akap4, Clcn5, Usp27x, 2010204K13Rik, LOC668973, Ppp1r3f, 4930524L23Rik, Foxp3, Ccdc22, Cacna1f, Syp, LOC632264, Lmo6, Plp2, Pdzx, Ppia-psx_14.1, Gpkow, LOC100043938, Wdr45, Praf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099H19.bB6Ng01-099H19.g
ACCDH909266DH909267
length280408
definitionDH909266|Mus musculus domesticus DNA, BAC clone: B6Ng01-099H19, 5' end.DH909267|Mus musculus domesticus DNA, BAC clone: B6Ng01-099H19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,306,883 - 6,307,163)(151,778,028 - 151,778,441)
sequence
gaattcagtgtttgttgcatactaccttctaattcatatttgcttatctt
tcattttcaaggagaaattgtggattaagttggaatttgactttgttgaa
tagatacttatacttatttcttgacaagccccatgctacaaggtatatta
aaagtatgatgataggcaaataaatatttttcctctcagagagctcagaa
tcaagctagctaggatgagagaaatatgtaaatggagatctaaggaagag
gggaagagggtggcagtgtgttttggggat
tttgaacagttctgagccccattttttaatggggttatttgattttctta
agtccaccttcttgagttctttatatatgttggatattagtcccctatct
gatttaggataggtaaagatcctttcccaatctgttggtggtctttttgt
cttattgacactgacctgtgtgctcaggtttctggcttcctgactgtcct
gccatggtttcaggacacacaggcacatgccagacaagtattctgctgct
gtactatgcttcctgccctggaagagagttcaggtgttgattctggtctg
gaaaggggtgagggtcggggtgtgggaccatagtgtctcctggctgtccc
agatccttcctgagtggccaacacctaccactttccatccagagtctgga
atccattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_6306883_6307163
seq2: B6Ng01-099H19.b_41_320 (reverse)

seq1  ATCCCCAAAACACACTGCCACCCTCTTCCCCTCTTCCTTAGATCTCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAAAACACACTGCCACCCTCTTCCCCTCTTCCTTAGATCTCCATT  50

seq1  TACATATTTCTCTCATCCTAGCTAGCTTGATTCTGAGCTCTCTGAGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTTCTCTCATCCTAGCTAGCTTGATTCTGAGCTCTCTGAGAGGA  100

seq1  AAAATATTTATTTGCCTATCATCATACTTTTAATATACCTTGTAGCATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTATTTGCCTATCATCATACTTTTAATATACCTTGTAGCATGG  150

seq1  GGCTTGTCAAGAAATAAGTATAAGTATCTATTCAACAAAGTCAAATTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTCAAGAAATAAGTATAAGTATCTATTCAACAAAGTCAAATTCCA  200

seq1  ACTTAATCCACAATTTCTCCTTGAAAATGAAAGATAAGCAAATATGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATCCACAATTTCTCCTTGAAAATGAAAGATAAGCAAATATGAATT  250

seq1  GTGAAGGTAGTATGCAACAAACACTGAATTC  281
        |||||||||||||||||||||||||||||
seq2  -AGAAGGTAGTATGCAACAAACACTGAATTC  280

seq1: chr2_151778028_151778441
seq2: B6Ng01-099H19.g_68_481

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAACAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100

seq1  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150

seq1  TTTTGTCTTATTGACACTGACCTGTGTGCTCAGGTTTCTGGCTTCCTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACACTGACCTGTGTGCTCAGGTTTCTGGCTTCCTGAC  200

seq1  TGTCCTGCCATGGTTTCAGGACACACAGGCACATGCCAGACAAGTATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGCCATGGTTTCAGGACACACAGGCACATGCCAGACAAGTATTCT  250

seq1  GCTGCTGTACTATGCTTCCTGCCCTGGAAGAGAGTTCAGGTGTTGATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTACTATGCTTCCTGCCCTGGAAGAGAGTTCAGGTGTTGATTCT  300

seq1  GGTCTGGAAAGGGGTGAGGGTCGGGGTGTGGGACCAGAGTGTCTCCTGGC  350
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGTCTGGAAAGGGGTGAGGGTCGGGGTGTGGGACCATAGTGTCTCCTGGC  350

seq1  TGTCCCAGACCCTTCCTGAGTGGCCAACACCTACCACTTCCCATCCAGAG  400
      ||||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  TGTCCCAGATCCTTCCTGAGTGGCCAACACCTACCACTTTCCATCCAGAG  400

seq1  TCTGGAAGCCATTG  414
      ||||||| ||||||
seq2  TCTGGAATCCATTG  414