BAC Information

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BAC

Clone NameB6Ng01-099I03
ChromosomeX (Build37)
Map Location 27,579,403 - 27,580,545
singlet/doubletsinglet
Overlap geneLOC22526
Upstream geneLOC100042154, EG664861, LOC664866, LOC100042175, LOC100039194, LOC100039208, EG664877, LOC664881, LOC100039240, LOC100039248, LOC100039073, EG664890, LOC664898
Downstream geneEG664906, LOC664917, LOC100039324, LOC100039334, LOC100039096, EG664923, LOC100039364, LOC100039377, LOC100039386, LOC100039127, EG664944, LOC100039423, LOC100039145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099I03.bB6Ng01-099I03.g
ACCDH909282DH909283
length1,1641,117
definitionDH909282|Mus musculus domesticus DNA, BAC clone: B6Ng01-099I03, 5' end.DH909283|Mus musculus domesticus DNA, BAC clone: B6Ng01-099I03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaataccgaaggtttgagatgcacttgaaaaaatg
ttcagcatctttaaccatcagggaaatgcaaataaaaacaaccctgagat
tctacctcacaccagtcagaatggctaagataaaaaattcgggtgacctc
agatgctggcgaggatgtggagaaagaggagcactcctcctttgctcgtg
ggattgcaagcttttacaaccactctgtaaatcagtctggcagtttctca
aaaaatttaacatagtaatatctgaagattcagtaattcctttcctgggc
atatacccagagaaggacacgtgcagtagtatgttcctggcagccttttt
tataatggccagaagctggaaagaatccagatgtccctcaacaggggaat
ggatacagaaaatatggtacatttacacaatggagtactactcagctatt
aaaacagtggatttatgaaattcctaagcaaatggatggacctggaggac
atcatcctgagtgaggtaacccaatcacaaagaagtcacttgaaatgcac
tcactgataagtggatattagcccagaaacttacaatacccaatatacaa
tttgcaaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccaca
agaaaatcaagaaggaaaacaacgcatggacacttcatactaccttagaa
tagggaacaaaatacccatggaaggagttacagagacaaagtttggagct
aagtcgaaaggatggaccatccagagactaccccacccaggcatccattt
ccataattagccaccaaatgcagacactattgcacatgccagccagatgt
tgctgaacagactctgatatagctgtcttgtgtgaggatatgccagtgcc
tggcaaatacagaagtggattttcactgtcatctatgggatggaacacag
gtcctatggaggagctagagaaagtatcaggagcagaagggtctgcaccc
tataggtgaccacatatgactacagtatccctaagctgtttcctagctca
atgtagcagaagaatgctagtcagcatcactggagaagccgttgtctgca
cttattgcgcgatcggattgcgagtctagaattgatggatgtggacaaca
cgtaggggaggact
gaattcaatgccttcatctggcctcctcaggtacaagacatacaagctgt
gtacatacacacaatcaagcaaaacaaacatacccataaaataaaattta
aaaaaataagtaataagggttatattaaagaattcatttttccattgtgt
catataaagaaaagcacagaggagttttagaaaagaaactgacttaatat
aaaattaatactgggtcaacgaaatactgttgcatgtacagaattttgta
tacatatcacttagctttgaatacatggaatgtagaaaagtttacatcat
ttttttcctctaaaaatcccttcaatgcagttatgaaaatgcctcagtaa
taaataggatttactgtgaaaggaggacgttcgcaagtttgattctagta
cccatttggaaaactaaccatggatggttgcttctacaatagcagcactg
tggtaggcagagtgagaattgctaggacttgctggctgcttatctagcta
catgttcagtgaaagagcaggtcttacgggaataaggtggaaagaaatag
agcaaaacccaacatcctcctctgccctccacatgtgtatatatgcacca
cagacacaaatatacgaaaaaattaaaattaagtttaattaatgtcacac
ctgttgaaaaagcaccattttcacttctgtaccacaggcaaaaataagtc
catgatgctaaatcaaaaatatttgcaagagtccgtgtcatgagtagatc
ttgggtgctgacctagtcccacaatacccctagtaagctcaaatcccagg
tgctctaacactaccaggatcacaggaatggccccaacatcaggagtaac
tgagtccctaaaggatccagggacacaggaactcctgccttgccagtggc
atggattccttctggtctgaaaatgcacttggatcagacctggggtactg
gctctgcacccactctaaaacacccatagggagcatgactcccaggtatc
tgaatgcccagatcacagatcacgagagctcgactccagagatcagacca
cccagacctgagttctgacgaggcccagctgagccaacatctttccacac
tgtgtactgaaccccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_27579403_27580545
seq2: B6Ng01-099I03.g_66_1182

seq1  GAATTCAATGCCTTCATCTGGCCTCCTCAGGTACAAGACATACAAGCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGCCTTCATCTGGCCTCCTCAGGTACAAGACATACAAGCTGT  50

seq1  GTACATACACACAATCAAGCAAAACAAACATACCCATAAAATAAAATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATACACACAATCAAGCAAAACAAACATACCCATAAAATAAAATTTA  100

seq1  AAAAAATAAGTAATAAGGGTTATATTAAAGAATTCATTTTTCCATTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAGTAATAAGGGTTATATTAAAGAATTCATTTTTCCATTGTGT  150

seq1  CATATAAAGAAAAGCACAGAGGAGTTTTAGAAAAGAAACTGACTTAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAAGAAAAGCACAGAGGAGTTTTAGAAAAGAAACTGACTTAATAT  200

seq1  AAAATTAATACTGGGTCAACGAAATACTGTTGCATGTACAGAATTTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAATACTGGGTCAACGAAATACTGTTGCATGTACAGAATTTTGTA  250

seq1  TACATATCACTTAGCTTTGAATACATGGAATGTAGAAAAGTTTACATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATCACTTAGCTTTGAATACATGGAATGTAGAAAAGTTTACATCAT  300

seq1  TTTTTTCCTCTAAAAATCCCTTCAATGCAGTTATGAAAATGCCTCAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCTCTAAAAATCCCTTCAATGCAGTTATGAAAATGCCTCAGTAA  350

seq1  TAAATAGGATTTACTGTGAAAGGAGGACGTTCGCAAGTTTGATTCTAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGGATTTACTGTGAAAGGAGGACGTTCGCAAGTTTGATTCTAGTA  400

seq1  CCCATTTGGAAAACTAACCATGGATGGTTGCTTCTACAATAGCAGCACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTGGAAAACTAACCATGGATGGTTGCTTCTACAATAGCAGCACTG  450

seq1  TGGTAGGCAGAGTGAGAATTGCTAGGACTTGCTGGCTGCTTATCTAGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGCAGAGTGAGAATTGCTAGGACTTGCTGGCTGCTTATCTAGCTA  500

seq1  CATGTTCAGTGAAAGAGCAGGTCTTACGGGAATAAGGTGGAAAGAAATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCAGTGAAAGAGCAGGTCTTACGGGAATAAGGTGGAAAGAAATAG  550

seq1  AGCAAAACCCAACATCCTCCTCTGCCCTCCACATGTGTATATATGCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAACCCAACATCCTCCTCTGCCCTCCACATGTGTATATATGCACCA  600

seq1  CAGACACAAATATACGAAAAAATTAAAATTAAGTTTAATTAATGTCACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACAAATATACGAAAAAATTAAAATTAAGTTTAATTAATGTCACAC  650

seq1  CTGTTGAAAAAGCACCATTTTCACTTCTGTACCACAGGCAAAAATAAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAAAAAGCACCATTTTCACTTCTGTACCACAGGCAAAAATAAGTC  700

seq1  CATGATGCTAAATCAAAAATATTTGCAAGAGTCCGTGTCATGAGTAGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGCTAAATCAAAAATATTTGCAAGAGTCCGTGTCATGAGTAGATC  750

seq1  TTGGGTGCTGACCTAGTCCCACAATACCCCTAGTAAGCTCAAATCCCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGCTGACCTAGTCCCACAATACCCCTAGTAAGCTCAAATCCCAGG  800

seq1  TGCTCTAACACTACCAGGATCACAGGAATGGCCCCAACATCAGGAGTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAACACTACCAGGATCACAGGAATGGCCCCAACATCAGGAGTAAC  850

seq1  TGAGTCCCT-AAGGATCCAGGGACACAGGAACTCCTGCCTTGCCAGTGGC  899
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCCTAAAGGATCCAGGGACACAGGAACTCCTGCCTTGCCAGTGGC  900

seq1  ATGGATTCCTTCTGGTCTGAAAATGCACTTGGATCAGACCTGGGGTACTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTCCTTCTGGTCTGAAAATGCACTTGGATCAGACCTGGGGTACTG  950

seq1  GCTCTGCACCCACTCTTAAAACACCCATAGGGAGCATGACTCCCAGGTAT  999
      ||||||||||||||| ||||||||||||||||||||||||||||||||| 
seq2  GCTCTGCACCCACTC-TAAAACACCCATAGGGAGCATGACTCCCAGGTA-  998

seq1  TCTGAAATGCCCAAGATCACAGGATCACAGAGGAAGCTCGACTCCCAGGA  1049
      |||| ||||||| |||||||| |||||| |||  |||||||||||   ||
seq2  TCTG-AATGCCC-AGATCACA-GATCAC-GAG--AGCTCGACTCC--AGA  1040

seq1  GATCAGACACACCCAGGAACACTGGAGTTCTGACAGAAGAGCACAGCTGA  1099
      |||||||| |||||||    ||  |||||||||| ||   || |||||||
seq2  GATCAGAC-CACCCAG----ACCTGAGTTCTGAC-GA--GGCCCAGCTGA  1082

seq1  GGGCACAACATCTTTCCCAACAACCTGTGTATCTGGGACCCCCA  1143
      |    ||||||||||||  |||  ||||||| || | |||||||
seq2  G---CCAACATCTTTCC--ACA--CTGTGTA-CT-GAACCCCCA  1117