BAC Information

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BAC

Clone NameB6Ng01-099M19
ChromosomeX (Build37)
Map Location 71,684,048 - 71,822,176
singlet/doubletdoublet
Overlap geneIkbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1
Upstream geneUchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx
Downstream geneOlfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437, EG667446, LOC669291, Gab3, Dkc1, Mpp1, EG547412, 4930428E23Rik, EG667190, F8, LOC572559, LOC667218, Fundc2, Mtcp1, Brcc3, LOC667496, Vbp1, Rab39b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099M19.bB6Ng01-099M19.g
ACCDH909493DH909494
length1,0711,178
definitionDH909493|Mus musculus domesticus DNA, BAC clone: B6Ng01-099M19, 5' end.DH909494|Mus musculus domesticus DNA, BAC clone: B6Ng01-099M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,821,100 - 71,822,176)(71,684,048 - 71,685,240)
sequence
gaattctttcctgccatagattgccctgggatgaaaataacgtttgaaat
gaatgtaatttgaaggcttaagtgcaatgacattataaaagggagctaat
tatgtctgttaatcttattaggtagatttaaaagagattgaagtcctaat
tccaatctcttttcaacctcatgtggaagctctggatggtttgtggggcc
agagctctaaaatttaagccactatccatgttcactcagtgactcctggt
gaagattttactctttttcattgtttatttataacaaacattcttcataa
taacctccaatcagaaattctttgagactatgttttcagtctttatcagt
catacaacagaaccatatgatgcattcatcctgtgaatgggccactgata
gcatcatttctaaactggctatttaacctgtctgtaaccttgttaatttt
aaggcacattcatctggactgatgcatggtttttggtgccaatgatgtgg
ttgtgtgtggaactttttttttatttgtttgtttgttttgttttgttttg
ttttgtttttcgagacaggatttctctgtatagccctggctgtcctggaa
ctcactttgtagaccaggctggcctcgaactcagaaatccacctgcctct
gcctcccaagtgctgagattaaaggcgtgcgccaccaccgcccagctttg
tgtggaacttttttatggcacatatggtctacaaggtcacttgcatcatt
ctgcatgtccaagccatgtctccttcatataaatctagtgtaagggcaga
aacgtcatgatgagcttattttctaactctctgaatttacttttcattgt
ttaaaacatcctagcaatttgcaaaggcaacaacctcagtatctttcctc
atttgaggtgccttacttcaaagtgttaagttatacataaagcccaagtt
tataaggggtgtttaggttccatgtttcttgtttaatgatgaatacaggg
gactactccctgatgttgtcaagaatcaacactgtagtcccctattccaa
gatggtaggcaactctattat
gaattctctgctgagactattgatgctatatcttgtcccatggggctgta
caacctaggtatggaacctgagcctctagtgagggtgcctgggactagag
ctaaactgtgagttgcacagtagttcctgcctatccttgagtccagtgct
aatgagctcacagccttctcagggtgttctttttttgttgcatgtcagga
ttcgagcagttagtgagcaggtcagacagctggagagtgagcgggaggtg
ctacagcagcagcacagcgtccaggtggaccagctgcgtatgcagaacca
gagcgtggaggctgccttgcgaatggagcggcaggctgcttcagaggaga
agtaagtgcctgggagggttggtaccaagagatctcagagtgtggaggct
gccttgcgaatggagcgacaggctgcttcagagaagtaagtgcctgggag
gcttggtaccaagagatctcacagcacccgtggtgctttctgccttttag
ggagccctgatagggactgattgtgtataaaagggctgatttttctcctt
ttgccttgctaatgacagagtcaactattatatgtaaacaggaatatttt
ctacccatattcatgttcactacatgtcctacataggttcttttcatcac
agttaaaatatactcttggtgtaaggaaagcaaagagccatggtgccttc
aagctggtcctaaacactccttatctgggctcacaatgcctgtacaggct
ctcaacctgctattggtatctggttcagcatccttttgagttttctttaa
ttagaacagtctccctgcctctacatttattttctttttggtgctagaga
tggagggtagggcctcaaacacactaggccaacagttctatttcttgagt
gtaccctagcctttgttagaaaacatttccagatgttgggctttaggaaa
acatgaactatgtagcagccaaatatttgcagtgattccttgcagtcaca
aagcttgctttagaagctgatagcttcagacccagaatgttattcaggag
ccaaattttcagtctctttatggacagaagaagaagtagattgtctaagc
agtttggccctacctggaccaagcattttctcagtgcagcctcttttgcc
agctgggctggctcagatgcagtgcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_71821100_71822176
seq2: B6Ng01-099M19.b_44_1114 (reverse)

seq1  ATAATAGAGTTGCCTAACATCTTGGGATTAGGGGGACTACAGTGTTGGAT  50
      |||||||||||||||| |||||||| ||   ||||||||||||||| |||
seq2  ATAATAGAGTTGCCTACCATCTTGGAAT--AGGGGACTACAGTGTT-GAT  47

seq1  TCTTTACAACATCAGGGAGTAGTCCCCTGTATACATCATTAAACAAGAAA  100
      |||| ||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTTGACAACATCAGGGAGTAGTCCCCTGTATTCATCATTAAACAAGAAA  97

seq1  CATGGAACCTAAACACCCCTTATAAACTTGGGCTTTATGTATAAACTTAA  150
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CATGGAACCTAAACACCCCTTATAAACTTGGGCTTTATGTAT-AACTTAA  146

seq1  CACTTTGAAAGTAAGGCACCTCAAATGAGAAAAGATACTGAGGTTGTTGC  200
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  CACTTTG-AAGTAAGGCACCTCAAATGAGGAAAGATACTGAGGTTGTTGC  195

seq1  CTTTGCAAATTGCTA-GATGTTTTTAAACAATG-AAAGTAAATTTCAGAG  248
      ||||||||||||||| |||| |||||||||||| |||||||| |||||||
seq2  CTTTGCAAATTGCTAGGATG-TTTTAAACAATGAAAAGTAAA-TTCAGAG  243

seq1  AGTTAGAAAATAAAGCTCATCATGACGTTTCTGCCCTTACACTAGATTTA  298
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAAAT-AAGCTCATCATGACGTTTCTGCCCTTACACTAGATTTA  292

seq1  TATGAAGGAGACATGGCTTGGACATGCAGAATGATGCAAGTGACCTTGTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGGAGACATGGCTTGGACATGCAGAATGATGCAAGTGACCTTGTA  342

seq1  GACCATATGTGCCATAAAAAAGTTCCACACAAAGCTGGGCGGTGGTGGCG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATATGTGCCATAAAAAAGTTCCACACAAAGCTGGGCGGTGGTGGCG  392

seq1  CACGCCTTTAATCTCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCTTTAATCTCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAG  442

seq1  TTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTAT  492

seq1  ACAGAGAAATCCTGTCTCGAAAAACAAAACAAAACAAAACAAAACAAACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAATCCTGTCTCGAAAAACAAAACAAAACAAAACAAAACAAACA  542

seq1  AACAAATAAAAAAAAAGTTCCACACACAACCACATCATTGGCACCAAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAAAAAAAAAGTTCCACACACAACCACATCATTGGCACCAAAAA  592

seq1  CCATGCATCAGTCCAGATGAATGTGCCTTAAAATTAACAAGGTTACAGAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCATCAGTCCAGATGAATGTGCCTTAAAATTAACAAGGTTACAGAC  642

seq1  AGGTTAAATAGCCAGTTTAGAAATGATGCTATCAGTGGCCCATTCACAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAATAGCCAGTTTAGAAATGATGCTATCAGTGGCCCATTCACAGG  692

seq1  ATGAATGCATCATATGGTTCTGTTGTATGACTGATAAAGACTGAAAACAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGCATCATATGGTTCTGTTGTATGACTGATAAAGACTGAAAACAT  742

seq1  AGTCTCAAAGAATTTCTGATTGGAGGTTATTATGAAGAATGTTTGTTATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAAAGAATTTCTGATTGGAGGTTATTATGAAGAATGTTTGTTATA  792

seq1  AATAAACAATGAAAAAGAGTAAAATCTTCACCAGGAGTCACTGAGTGAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAATGAAAAAGAGTAAAATCTTCACCAGGAGTCACTGAGTGAAC  842

seq1  ATGGATAGTGGCTTAAATTTTAGAGCTCTGGCCCCACAAACCATCCAGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATAGTGGCTTAAATTTTAGAGCTCTGGCCCCACAAACCATCCAGAG  892

seq1  CTTCCACATGAGGTTGAAAAGAGATTGGAATTAGGACTTCAATCTCTTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACATGAGGTTGAAAAGAGATTGGAATTAGGACTTCAATCTCTTTT  942

seq1  AAATCTACCTAATAAGATTAACAGACATAATTAGCTCCCTTTTATAATGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTACCTAATAAGATTAACAGACATAATTAGCTCCCTTTTATAATGT  992

seq1  CATTGCACTTAAGCCTTCAAATTACATTCATTTCAAACGTTATTTTCATC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCACTTAAGCCTTCAAATTACATTCATTTCAAACGTTATTTTCATC  1042

seq1  CCAGGGCAATCTATGGCAGGAAAGAATTC  1077
      |||||||||||||||||||||||||||||
seq2  CCAGGGCAATCTATGGCAGGAAAGAATTC  1071

seq1: chrX_71684048_71685240
seq2: B6Ng01-099M19.g_70_1247

seq1  GAATTCTCTGCTGAGACTATTGATGCTATATCTTGTCCCATGGGGCTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCTGAGACTATTGATGCTATATCTTGTCCCATGGGGCTGTA  50

seq1  CAACCTAGGTATGGAACCTGAGCCTCTAGTGAGGGTGCCTGGGACTAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTAGGTATGGAACCTGAGCCTCTAGTGAGGGTGCCTGGGACTAGAG  100

seq1  CTAAACTGTGAGTTGCACAGTAGTTCCTGCCTATCCTTGAGTCCAGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTGTGAGTTGCACAGTAGTTCCTGCCTATCCTTGAGTCCAGTGCT  150

seq1  AATGAGCTCACAGCCTTCTCAGGGTGTTCTTTTTTTGTTGCATGTCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCTCACAGCCTTCTCAGGGTGTTCTTTTTTTGTTGCATGTCAGGA  200

seq1  TTCGAGCAGTTAGTGAGCAGGTCAGACAGCTGGAGAGTGAGCGGGAGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGCAGTTAGTGAGCAGGTCAGACAGCTGGAGAGTGAGCGGGAGGTG  250

seq1  CTACAGCAGCAGCACAGCGTCCAGGTGGACCAGCTGCGTATGCAGAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCAGCAGCACAGCGTCCAGGTGGACCAGCTGCGTATGCAGAACCA  300

seq1  GAGCGTGGAGGCTGCCTTGCGAATGGAGCGGCAGGCTGCTTCAGAGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGTGGAGGCTGCCTTGCGAATGGAGCGGCAGGCTGCTTCAGAGGAGA  350

seq1  AGTAAGTGCCTGGGAGGGTTGGTACCAAGAGATCTCAGAGTGTGGAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTGCCTGGGAGGGTTGGTACCAAGAGATCTCAGAGTGTGGAGGCT  400

seq1  GCCTTGCGAATGGAGCGACAGGCTGCTTCAGAGAAGTAAGTGCCTGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGCGAATGGAGCGACAGGCTGCTTCAGAGAAGTAAGTGCCTGGGAG  450

seq1  GCTTGGTACCAAGAGATCTCACAGCACCCGTGGTGCTTTCTGCCTTTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTACCAAGAGATCTCACAGCACCCGTGGTGCTTTCTGCCTTTTAG  500

seq1  GGAGCCCTGATAGGGACTGATTGTGTATAAAAGGGCTGATTTTTCTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCTGATAGGGACTGATTGTGTATAAAAGGGCTGATTTTTCTCCTT  550

seq1  TTGCCTTGCTAATGACAGAGTCAACTATTATATGTAAACAGGAATATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTGCTAATGACAGAGTCAACTATTATATGTAAACAGGAATATTTT  600

seq1  CTACCCATATTCATGTTCACTACATGTCCTACATAGGTTCTTTTCATCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCATATTCATGTTCACTACATGTCCTACATAGGTTCTTTTCATCAC  650

seq1  AGTTAAAATATACTCTTGGTGTAAGGAAAGCAAAGAGCCATGGTGCCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAATATACTCTTGGTGTAAGGAAAGCAAAGAGCCATGGTGCCTTC  700

seq1  AAGCTGGTCCTAAACACTCCTTATCTGGGCTCACAATGCCTGTACAGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGTCCTAAACACTCCTTATCTGGGCTCACAATGCCTGTACAGGCT  750

seq1  CTCAACCTGCTATTGGTATCTGGTTCAGCATCCTTTTGAGTTTTCTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCTGCTATTGGTATCTGGTTCAGCATCCTTTTGAGTTTTCTTTAA  800

seq1  TTTAGAACAGTCTCCCTGCCTCTACATTTATTTTCTTTTTGGTGCTAGAG  850
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTAGAACAGTCTCCCTGCCTCTACATTTATTTTCTTTTTGGTGCTAGAG  849

seq1  ATGGAGGGTAGGGCCTCAAACACACTAGG-CAACAGTTCTA-TTCCTGAG  898
      ||||||||||||||||||||||||||||| ||||||||||| ||| ||||
seq2  ATGGAGGGTAGGGCCTCAAACACACTAGGCCAACAGTTCTATTTCTTGAG  899

seq1  TTGTACCCTAGCCCTTGTTAG-AAACATTCCAAGATGTTGGCTTTAAGGA  947
       |||||||||||| ||||||| ||||||| | |||||||||  || ||||
seq2  -TGTACCCTAGCCTTTGTTAGAAAACATTTCCAGATGTTGGGCTTTAGGA  948

seq1  AAACATGAACTATGTAGCAGCCAAATTATTTGCAGTGAATCCTTGCAGTC  997
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  AAACATGAACTATGTAGCAGCCAAA-TATTTGCAGTGATTCCTTGCAGTC  997

seq1  AACAAAGCTTGCCTTAG-AGCTGATAGCCTCAGGAGCCCAG-ATGTAATC  1045
       ||||||||||| |||| |||||||||| ||||   ||||| |||| || 
seq2  -ACAAAGCTTGCTTTAGAAGCTGATAGCTTCAG--ACCCAGAATGTTATT  1044

seq1  CAGGAAGCCCAAATTTCAGGTCTCTTATGGGACAAGAAGGAAGAAGGTAA  1095
      |||| |||| || ||||| |||||||   |||| |||| |||||| ||| 
seq2  CAGG-AGCCAAATTTTCA-GTCTCTTTATGGAC-AGAA-GAAGAA-GTAG  1089

seq1  AGTTGTCTTAGGCAAGTTGTGGCTCTACTGGGACAAAGCAGTTTCTCCAG  1145
      | |||||| ||   |||| |||| ||||  |||| ||||| ||||| |||
seq2  A-TTGTCTAAG--CAGTT-TGGCCCTACCTGGACCAAGCATTTTCT-CAG  1134

seq1  TGACAGCTCCTTTTTGCACAGGCGGAAGCTGGCTCAGTTGCAG-GCAGC  1193
      || |||| |  |||||| |||  ||  |||||||||| ||||| |||||
seq2  TG-CAGC-CTCTTTTGC-CAGCTGG--GCTGGCTCAGATGCAGTGCAGC  1178