BAC Information

Click to search

BAC

Clone NameB6Ng01-102F14
Chromosome2 (Build37)X (Build37)
Map Location 142,776,635 - 142,777,69625,119,340 - 25,119,922
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102F14.bB6Ng01-102F14.g
ACCDH911268DH911269
length586581
definitionDH911268|Mus musculus domesticus DNA, BAC clone: B6Ng01-102F14, 5' end.DH911269|Mus musculus domesticus DNA, BAC clone: B6Ng01-102F14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,635 - 142,777,696)(25,119,340 - 25,119,922)
sequence
gaattctttgttcagctctgagccccatcttttaagggggctatttgatt
ttctggagtccaccctcttaagttcttaatatatattggatattagtccc
ctatctgatttaagataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgatggtgtcttttgccttgcagaagctttgcagtttca
tgaggtccccttgatcttaaagcacaagccatggctgttctattcaggaa
ttttttctctgtgcccatatctttgagacttttccccactttctcctcta
taagaagcagtgtctctggttttatgtgaagttccttgatccacttagat
ttgaccttagtataaggagagaggaatgtgtcgattcccattcttctaca
tgataacaaccagttgtgccagcaccaattgttgaaaatgctgtcttttt
tcactagatggttttagctgccttgttgaagatcaagtgaccataggtgt
gtaggtcatttcttggtcttcattctattccattggtctcttgtctgtca
ctatacaataccatgcagttttatcacaatgctctg
gaattctggtcctctagaagagcagcaagcattctttacttacccagtga
tctctccattccctcagacataccatgcactcacagttagcctttaattt
ctaatcctcacacccctacatccaaagatctccctgtaccatcatgacca
gcaggatgaaatctcttgaaaacctggaataagtttgttaataacagcac
atgagcaggagagagctaagtgttctaaataagtcaagcatatgaagaaa
gttaacattacattctccataaatatcagaataccatttatgatacattt
atccactgtatatatgatatatattttcccatatccatatgatatatata
tatatatatatatatatatatatatatatatatccattcaagcactaaaa
taacatgtatggtatgcatttgtttaaatatagatgctagcatttaagtc
tttgataagtcacaatccatataaccacagagattaggtaaagagtatgg
aactaaagtagagggaagaatattcaaaggaggaaaaatagaattataga
cttatgggtggggatatatggggattggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776635_142777696
seq2: B6Ng01-102F14.b_49_632 (reverse)

seq1  CAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAG  50
      |||||| |||||||| |||||||||||||| | |||||| ||||||||||
seq2  CAGAGC-ATTGTGAT-AAAACTGCATGGTA-TTGTATAGTGACAGACAAG  47

seq1  TAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTAT  100
       ||||||||||||||||| |||||||| ||||||| ||| ||||||||||
seq2  -AGACCAATGGAATAGAA-TGAAGACCAAGAAATG-ACCTACACACCTAT  94

seq1  GGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGA  150
      ||||||||||||||| |||||| ||||||||||||| ||  ||| |||||
seq2  GGTCACTTGATCTTCAACAAGGCAGCTAAAACCATCTAG-TGAAAAAAGA  143

seq1  CAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAA  193

seq1  GAATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAG  250
      |||||||||||||  ||| | | ||||||| |||||||||||||||||||
seq2  GAATGGGAATCGACACATTCCTCTCTCCTTATACTAAGGTCAAATCTAAG  243

seq1  TGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGA  300
      ||||||||||||||||||||||||||||||||||||   |||||||||||
seq2  TGGATCAAGGAACTTCACATAAAACCAGAGACACTGCTTCTTATAGAGGA  293

seq1  GAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGA  350
      ||||||||||||||| ||  ||||||||||||||| | | ||||||||||
seq2  GAAAGTGGGGAAAAGTCTCAAAGATATGGGCACAGAGAAAAAATTCCTGA  343

seq1  ACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGAC  400
      | |||||||| |||||||||||| |||||||           || |||||
seq2  ATAGAACAGCCATGGCTTGTGCTTTAAGATC-----------AAGGGGAC  382

seq1  CTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGAC  450
      || |||||||| ||||| ||||||||||||||||||||| ||||||||||
seq2  CTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCATCAATAAGAC  432

seq1  AAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAG  500
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCTTAAATCAG  482

seq1  ATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTC  550
      ||||||||||||||||||| |||||| ||||||| |||| |||||||| |
seq2  ATAGGGGACTAATATCCAATATATATTAAGAACTTAAGAGGGTGGACTCC  532

seq1  AGAAAATCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCAGT  600
      ||||||||||||| |||| |||||| ||||||||||           || 
seq2  AGAAAATCAAATAGCCCCCTTAAAAGATGGGGCTCA----------GAGC  572

seq1  GGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTA  650
       ||| |||||                                        
seq2  TGAACAAAGAAT--------------------------------------  584

seq1  TCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGT  700
                                                        
seq2  --------------------------------------------------  584

seq1  CAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAAC  750
                                                        
seq2  --------------------------------------------------  584

seq1  TTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAA  800
                                                        
seq2  --------------------------------------------------  584

seq1  AAATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGA  850
                                                        
seq2  --------------------------------------------------  584

seq1  CAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTG  900
                                                        
seq2  --------------------------------------------------  584

seq1  TCTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTAT  950
                                                        
seq2  --------------------------------------------------  584

seq1  CCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAA  1000
                                                        
seq2  --------------------------------------------------  584

seq1  GGTGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAAC  1050
                                                        
seq2  --------------------------------------------------  584

seq1  TGAACAAAGAAT  1062
                  
seq2  ------------  584

seq1: chrX_25119340_25119922
seq2: B6Ng01-102F14.g_68_648

seq1  GAATTCTGGTCCTCTAGAAGAGCAGCAAGCATTCTTTACTTACCCAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTCCTCTAGAAGAGCAGCAAGCATTCTTTACTTACCCAGTGA  50

seq1  TCTCTCCATTCCCTCAGACATACCATGCACTCACAGTTAGCCTTTAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCATTCCCTCAGACATACCATGCACTCACAGTTAGCCTTTAATTT  100

seq1  CTAATCCTCACACCCCTACATCCAAAGATCTCCCTGTACCATCATGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCTCACACCCCTACATCCAAAGATCTCCCTGTACCATCATGACCA  150

seq1  GCAGGATGAAATCTCTTGAAAACCTGGAATAAGTTTGTTAATAACAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATGAAATCTCTTGAAAACCTGGAATAAGTTTGTTAATAACAGCAC  200

seq1  ATGAGCAGGAGAGAGCTAAGTGTTCTAAATAAGTCAAGCATATGAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCAGGAGAGAGCTAAGTGTTCTAAATAAGTCAAGCATATGAAGAAA  250

seq1  GTTAACATTACATTCTCCATAAATATCAGAATACCATTTATGATACATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACATTACATTCTCCATAAATATCAGAATACCATTTATGATACATTT  300

seq1  ATCCACTGTATATATGATATATATTTTCCCATATCCATATGATATATATA  350
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  ATCCACTGTATATATGATATATATTTTCCCATATCCATATG--ATATATA  348

seq1  TATATATATATATATATATATATATATATATATATCCATTCAAGCACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATCCATTCAAGCACTAA  398

seq1  AATAACATGTATGGTATGCATTTGTTTAAATATAGATGCTAGCATTTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACATGTATGGTATGCATTTGTTTAAATATAGATGCTAGCATTTAAG  448

seq1  TCTTTGATAAGTCACAATCCATATAACCACAGAGATTAGGTAAAGAGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGATAAGTCACAATCCATATAACCACAGAGATTAGGTAAAGAGTAT  498

seq1  GGAACTAAAGTAGAGGGAAGAATATTCAAAGGAGGAAAAATAGAATTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTAAAGTAGAGGGAAGAATATTCAAAGGAGGAAAAATAGAATTATA  548

seq1  GACTTATGGGTGGGGATATATGGGGATTGGAAG  583
      |||||||||||||||||||||||||||||||||
seq2  GACTTATGGGTGGGGATATATGGGGATTGGAAG  581