BAC Information

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BAC

Clone NameB6Ng01-102I07
ChromosomeX (Build37)
Map Location 60,759,442 - 60,870,197
singlet/doubletdoublet
Overlap genenone
Upstream gene1700019B21Rik, LOC671878, LOC666695, EG627420
Downstream geneLOC666729, EG627470, 3830417A13Rik, Slitrk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102I07.bB6Ng01-102I07.g
ACCDH911390DH911391
length1,1441,130
definitionDH911390|Mus musculus domesticus DNA, BAC clone: B6Ng01-102I07, 5' end.DH911391|Mus musculus domesticus DNA, BAC clone: B6Ng01-102I07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,759,442 - 60,760,607)(60,869,043 - 60,870,197)
sequence
gaattctctctccgtttgttttaatagcctgtgaaatggagaaatcctgc
cagtgtcctccacttgtcctctactgcaatcttacctggcaagctgtacg
aagcagtacaatagctaatttctagataagtatatcttaggacaccatac
aaaaatcagttgcaggtttgggctgccagcttgaattttctaaacataat
agcttagatgtaggaggaatagaggagatatttcgcttctgatacatttc
tatacactgatagtggtgatgaacagttaaagggatggagcctattatta
tggttcttttttttgaaagcatggttttaaacacagaaccaatttctttt
ctttatttctgcctatcgcctgggctcagttaccagaatgtttataaaag
tcttttaaaggtaaagggaagcaggcccttgagaaggctgagctgcagct
ttgtttttcttaagaattacatggattgcagcacaaatataaaatagata
caaaagaggttgctatgaaaacaatattgggctccttaaaatatttgttt
catttgagtagaatacatagaaatgctaaaatagcctcagaaaaggcatc
actctaagacaacaaacaggatttacattcagtttttcatgaagatggat
gcagaatcctataatggacttccaaaacactagttgtgagtgctaaaaag
aaacagcaacagtttaagtaggaaagagcttatttgaggcctctccttta
cccttaatgctatatgtaatgcattggttatgtagatttagtgtcttcca
taaagaaatgtaaaatagaaaaatatctcagaaacagagcaatacaagaa
gaaagctcttcacaagttcttttcatgcatgcactgaaggcactgacaga
acaagcataaaacaaaagagatggaatgctcaaattgggataatcaccac
gaatgccattatatctatagtatgaaagagaagactgcaataaatccagt
actaggagaagagttatcacagagctcaggaaagattatttaatgtctga
agagtagggaaacagactttatattttatacagtaattgcttttaatgac
ttagatgccaatattccttagctacctgcccatcagactgcttt
gaattccaggaaaatgttcttcctgaaaatattttatatgtgtattctag
tgatatttccttaccttaatctaatgatttttccttaccttcccatgcat
tgttttttttatataaatttgaagcctacatgtattttctaagctcaatt
attcaatcataaaactcaagtgaataattttgaacattgtctatttccaa
tctctgttatttgcttactccacgatttcaaagttgattcaaaaacatta
acttttcaaagaagtgttgaatttgaagtttcagatacaatatctaaaag
aaaagacacatgaaaaccattttataataaccctactatagtatttactt
tgaaatcatttttgaaatatgaattaccaattcaaagaaaacagaatttc
aagtacccaatgtatttcttaagaactcattccaaataagatttaattaa
agagatatattgaaacattacttttgagctctacataattttgaactctg
atttgtttaaatgtaaaatgtaggcagaattgagtttgtaaggtggtatc
aagggcaatgaatatggtgacactagcagaggaaaatctactagaaagtt
tttgtttaaaaatgtagaaaaagaaaaatatgtacttatagattataaag
tgactgatattgcttcataaaatacaacaataccaattcccaactcaaat
agtagttaaatttttcagcatattacaggatgaatgttgatattcaaagt
aatttaatgatagtcaaaattagagcatgtacaaaaatgcattatgcttg
cattagttacttctcggtctatgacaacatacttgatcaaggcaacttac
aggagattttctctgagtttactcttctagtgggatagagtccaacatgc
tataggtcaaagtctataggtacaagttgcgggagcagcagaaagatcac
atctactacaaacacaaagcatagagaagcatatgtgctagttatgacct
ttaagcctgccctcatgacatacattcacaagaagtctcatcacttccca
accttgctgtcactgggaacagcgtttcagtactcagtctacggaatatt
ttttatcaaacatattcatatcttacatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_60759442_60760607
seq2: B6Ng01-102I07.b_49_1192

seq1  GAATTCTCTCTCCGTTTGTTTTAATAGCCTGTGAAATGGAGAAATCCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTCCGTTTGTTTTAATAGCCTGTGAAATGGAGAAATCCTGC  50

seq1  CAGTGTCCTCCACTTGTCCTCTACTGCAATCTTACCTGGCAAGCTGTACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCCTCCACTTGTCCTCTACTGCAATCTTACCTGGCAAGCTGTACG  100

seq1  AAGCAGTACAATAGCTAATTTCTAGATAAGTATATCTTAGGACACCATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTACAATAGCTAATTTCTAGATAAGTATATCTTAGGACACCATAC  150

seq1  AAAAATCAGTTGCAGGTTTGGGCTGCCAGCTTGAATTTTCTAAACATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAGTTGCAGGTTTGGGCTGCCAGCTTGAATTTTCTAAACATAAT  200

seq1  AGCTTAGATGTAGGAGGAATAGAGGAGATATTTCGCTTCTGATACATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGATGTAGGAGGAATAGAGGAGATATTTCGCTTCTGATACATTTC  250

seq1  TATACACTGATAGTGGTGATGAACAGTTAAAGGGATGGAGCCTATTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACTGATAGTGGTGATGAACAGTTAAAGGGATGGAGCCTATTATTA  300

seq1  TGGTTCTTTTTTTTGAAAGCATGGTTTTAAACACAGAACCAATTTCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTTTTTTTTGAAAGCATGGTTTTAAACACAGAACCAATTTCTTTT  350

seq1  CTTTATTTCTGCCTATCGCCTGGGCTCAGTTACCAGAATGTTTATAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTCTGCCTATCGCCTGGGCTCAGTTACCAGAATGTTTATAAAAG  400

seq1  TCTTTTAAAGGTAAAGGGAAGCAGGCCCTTGAGAAGGCTGAGCTGCAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAAAGGTAAAGGGAAGCAGGCCCTTGAGAAGGCTGAGCTGCAGCT  450

seq1  TTGTTTTTCTTAAGAATTACATGGATTGCAGCACAAATATAAAATAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTCTTAAGAATTACATGGATTGCAGCACAAATATAAAATAGATA  500

seq1  CAAAAGAGGTTGCTATGAAAACAATATTGGGCTCCTTAAAATATTTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAGGTTGCTATGAAAACAATATTGGGCTCCTTAAAATATTTGTTT  550

seq1  CATTTGAGTAGAATACATAGAAATGCTAAAATAGCCTCAGAAAAGGCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAGTAGAATACATAGAAATGCTAAAATAGCCTCAGAAAAGGCATC  600

seq1  ACTCTAAGACAACAAACAGGATTTACATTCAGTTTTTCATGAAGATGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAAGACAACAAACAGGATTTACATTCAGTTTTTCATGAAGATGGAT  650

seq1  GCAGAATCCTATAATGGACTTCCAAAACACTAGTTGTGAGTGCTAAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATCCTATAATGGACTTCCAAAACACTAGTTGTGAGTGCTAAAAAG  700

seq1  AAACAGCAACAGTTTAAGTAGGAAAGAGCTTATTTGAGGCCTCTCCTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCAACAGTTTAAGTAGGAAAGAGCTTATTTGAGGCCTCTCCTTTA  750

seq1  CCCTTAATGCTATATGTAATGCATTGGTTATGTAGATTTAGTGTCTTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAATGCTATATGTAATGCATTGGTTATGTAGATTTAGTGTCTTCCA  800

seq1  TAAAGAAATGTAAAATAGAAAAATATCTCAGAAACAGAGCAATACAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAATGTAAAATAGAAAAATATCTCAGAAACAGAGCAATACAAGAA  850

seq1  GAAAGCTCTTCACAAGTTCTTTTCATGCATGCAACTGAAGGCACTGACAA  900
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  GAAAGCTCTTCACAAGTTCTTTTCATGCATGC-ACTGAAGGCACTGAC-A  898

seq1  GAACAAGCATAAAACAAAAGAGATGGAATGCTCAAATTGGGATAATCACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGCATAAAACAAAAGAGATGGAATGCTCAAATTGGGATAATCACC  948

seq1  ACGAATGCCATTATATCTATAAGTATGAAAAGAAGAAGACTGCAAATAAA  1000
      |||||||||||||||||||| |||||||||   |||||||||| ||||||
seq2  ACGAATGCCATTATATCTAT-AGTATGAAA--GAGAAGACTGC-AATAAA  994

seq1  TCCAGTACTAAGGAGAAGAGTTAATCACAGAGCTCAGGAAAGATTTATTT  1050
      ||||||||| |||||||||||| |||||||||||||||||||| ||||||
seq2  TCCAGTACT-AGGAGAAGAGTT-ATCACAGAGCTCAGGAAAGA-TTATTT  1041

seq1  AAATGTCTTGAGAGTAGGGGAACACAGACTTTATATTTTTAATACAGTTA  1100
       |||||||  |||||||||  | ||||||||||||||||  |||||| ||
seq2  -AATGTCTGAAGAGTAGGG--AAACAGACTTTATATTTT--ATACAG-TA  1085

seq1  ATTGCTTATAAATGACTTAGATGCAAATTAATACCTTTAGCTAACCTTGC  1150
      ||||||| | |||||||||||||| |||  || || |||||||  | |||
seq2  ATTGCTT-TTAATGACTTAGATGCCAAT--ATTCC-TTAGCTA--CCTGC  1129

seq1  TCAATCAGACTGCTTT  1166
       | |||||||||||||
seq2  -CCATCAGACTGCTTT  1144

seq1: chrX_60869043_60870197
seq2: B6Ng01-102I07.g_68_1197 (reverse)

seq1  GTATGTATAGATATGAATATGGTTTGAATAAAAAATAATATCCCCTGTAG  50
      ||||||| |||||||||||| ||||| |||||||||| |     | ||||
seq2  GTATGTA-AGATATGAATAT-GTTTG-ATAAAAAATATT-----CCGTAG  42

seq1  ACTGAAGTACTGGAACGCTTGTTTCCCAGTTGACAGCAAGGTTTGGGAAG  100
      |||| ||||||| ||||||   ||||||| ||||||||||| ||||||| 
seq2  ACTG-AGTACTGAAACGCT--GTTCCCAG-TGACAGCAAGG-TTGGGAA-  86

seq1  GTGATGGAGACTTCTTGGTGAATGTATGTCATTGAGGGCAGGCTTTAAAG  150
      ||||| |||||||||| |||||||||||||| ||||||||||| ||||||
seq2  GTGAT-GAGACTTCTT-GTGAATGTATGTCA-TGAGGGCAGGC-TTAAAG  132

seq1  GTTCATAACCTAAGCACATTATGCTTTCTCTATGCTTTGTGTTTGTAGTA  200
      | |||||||   |||||| ||||| |||||||||||||||||||||||||
seq2  G-TCATAAC--TAGCACA-TATGC-TTCTCTATGCTTTGTGTTTGTAGTA  177

seq1  GATGTGATCTTTCTGCCTGCCTCCCGCAACTTGTACCTATAGACTTTGAC  250
      ||||||||||||||| ||| ||||||||||||||||||||||||||||||
seq2  GATGTGATCTTTCTG-CTG-CTCCCGCAACTTGTACCTATAGACTTTGAC  225

seq1  CTATAGCATGTTGGACTCTATCCCACTAGAAGAGTAAACTCAGAGAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCATGTTGGACTCTATCCCACTAGAAGAGTAAACTCAGAGAAAAT  275

seq1  CTCCTGTAAGTTGCCTTGATCAAGTATGTTGTCATAGACCGAGAAGTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTAAGTTGCCTTGATCAAGTATGTTGTCATAGACCGAGAAGTAAC  325

seq1  TAATGCAAGCATAATGCATTTTTGTACATGCTCTAATTTTGACTATCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAAGCATAATGCATTTTTGTACATGCTCTAATTTTGACTATCATT  375

seq1  AAATTACTTTGAATATCAACATTCATCCTGTAATATGCTGAAAAATTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTTTGAATATCAACATTCATCCTGTAATATGCTGAAAAATTTAA  425

seq1  CTACTATTTGAGTTGGGAATTGGTATTGTTGTATTTTATGAAGCAATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTATTTGAGTTGGGAATTGGTATTGTTGTATTTTATGAAGCAATATC  475

seq1  AGTCACTTTATAATCTATAAGTACATATTTTTCTTTTTCTACATTTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTTTATAATCTATAAGTACATATTTTTCTTTTTCTACATTTTTAA  525

seq1  ACAAAAACTTTCTAGTAGATTTTCCTCTGCTAGTGTCACCATATTCATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACTTTCTAGTAGATTTTCCTCTGCTAGTGTCACCATATTCATTG  575

seq1  CCCTTGATACCACCTTACAAACTCAATTCTGCCTACATTTTACATTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGATACCACCTTACAAACTCAATTCTGCCTACATTTTACATTTAAA  625

seq1  CAAATCAGAGTTCAAAATTATGTAGAGCTCAAAAGTAATGTTTCAATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAGAGTTCAAAATTATGTAGAGCTCAAAAGTAATGTTTCAATATA  675

seq1  TCTCTTTAATTAAATCTTATTTGGAATGAGTTCTTAAGAAATACATTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTAATTAAATCTTATTTGGAATGAGTTCTTAAGAAATACATTGGG  725

seq1  TACTTGAAATTCTGTTTTCTTTGAATTGGTAATTCATATTTCAAAAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAAATTCTGTTTTCTTTGAATTGGTAATTCATATTTCAAAAATGA  775

seq1  TTTCAAAGTAAATACTATAGTAGGGTTATTATAAAATGGTTTTCATGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGTAAATACTATAGTAGGGTTATTATAAAATGGTTTTCATGTGT  825

seq1  CTTTTCTTTTAGATATTGTATCTGAAACTTCAAATTCAACACTTCTTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTAGATATTGTATCTGAAACTTCAAATTCAACACTTCTTTGA  875

seq1  AAAGTTAATGTTTTTGAATCAACTTTGAAATCGTGGAGTAAGCAAATAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAATGTTTTTGAATCAACTTTGAAATCGTGGAGTAAGCAAATAAC  925

seq1  AGAGATTGGAAATAGACAATGTTCAAAATTATTCACTTGAGTTTTATGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTGGAAATAGACAATGTTCAAAATTATTCACTTGAGTTTTATGAT  975

seq1  TGAATAATTGAGCTTAGAAAATACATGTAGGCTTCAAATTTATATAAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAATTGAGCTTAGAAAATACATGTAGGCTTCAAATTTATATAAAAA  1025

seq1  AAACAATGCATGGGAAGGTAAGGAAAAATCATTAGATTAAGGTAAGGAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGCATGGGAAGGTAAGGAAAAATCATTAGATTAAGGTAAGGAAA  1075

seq1  TATCACTAGAATACACATATAAAATATTTTCAGGAAGAACATTTTCCTGG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTAGAATACACATATAAAATATTTTCAGGAAGAACATTTTCCTGG  1125

seq1  AATTC  1155
      |||||
seq2  AATTC  1130