BAC Information

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BAC

Clone NameB6Ng01-103F18
ChromosomeX (Build37)
Map Location 36,133,005 - 36,241,204
singlet/doubletdoublet
Overlap gene6030498E09Rik
Upstream geneRhox6, Rhox7, Rhox8, LOC436198, Rhox9, LOC100039620, 4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331, Atp1b4, Gm40, EG227112, Lamp2, LOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1, EG665369
Downstream geneLOC547171, LOC670539, LOC100039700, 1700085A12Rik, LOC100039715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103F18.bB6Ng01-103F18.g
ACCDH911973DH911974
length4701,148
definitionDH911973|Mus musculus domesticus DNA, BAC clone: B6Ng01-103F18, 5' end.DH911974|Mus musculus domesticus DNA, BAC clone: B6Ng01-103F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,133,005 - 36,133,480)(36,240,066 - 36,241,204)
sequence
ctaggtcatctaaagagcctacaaagaacataaagggaaattagggaacc
tctctcctatataataccttgggatttgttttcacatacatatagagtgt
agataaattgacattttatttatttacctatttatatttaagatttattt
ttaaattatgtgtatatatttctgtgagtgcacacgtgagtccaaacacc
cacagaatccagaagaaagtctatccattggaggtagaattagatgtggt
tgtgagctacccattgtggatactgagaaccaatttgggtcctctgaaag
agtggtatgttcttgtaccttctgagccatttctcctgctcagcaattgg
cattttcaaaagctctctgagttggagaaccagtgctttaaggtgcaagt
gaccccagtgtaggggaatgccagggccaggaagcgggagtgggtgggtt
ggtgagcagggggagggggg
gaattcctgacataaatcctcgaagttgtgtttctttgcatgatagttct
ttaatcattcctgccttgttctagacagtcatatgcaggttgtgtgtgtg
tgtgtgtgtgtgtgtgtttctggtagatgcgtagctttctttgacttata
attagccttctttcaaatttctgttcacttttgtttatttttgttttaaa
tttcatttattatcccgacatctttacaagacacatttgctcccctgtga
cctgtgaagaccaattttaattttattttcagtgttgtgttcctcttaaa
ggatacaagtttttagacttgtttattttattttatgttttgtttacatg
tatatatgtgtaccacatgcatgtctggtacccacagaggccagaagaaa
atgtcagattctcgggaactggagttaccaatgagttgcaagccactatg
tggatgctggaaattgaacccctatatcctctaaaaagacaacaaaccct
tttgattgatgagtcatctctccagccctaaggatatacattttattgaa
tatttctgggatatgaatgctgcaataaaaagcctcttttgtgattattt
caaattcccacacttctcagagcatttgtctgcaggcatgtaatattatg
atcagcttccacctatacttatggtttgcaacaaggctgttactttctgt
agggttacgaatgcatatatttttatgcagtgcaatgattttgtactaat
ctgtatacggtcctggaactgaatggacaacaggtttgcagaactcatac
tccagtctatcactcccttgtaagataagaaaggccaagccccagggaga
tgatttagctcaatcactgaggcattcagtaagttttgaaggactaaaag
tagaagtcatacaagaatacatgtcctgcaacaccattagatggctactg
ttttcctgccttctagcaccgcttagaacagcaagagagtactttcaaat
ggtggccactgaaattataattctttttttctggaaagaaagaaagtcag
cctagtggctttgtgggatgtccaacctggaataggtcaggctgtgttca
atgtgtgatacaatgtaggttggaggggtccaacaaaaactagttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_36133005_36133480
seq2: B6Ng01-103F18.b_40_515

seq1  GAATTCCTAGGTCATCTAAAGAGCCTACAAAGAACATAAAGGGAAATTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGGTCATCTAAAGAGCCTACAAAGAACATAAAGGGAAATTAG  50

seq1  GGAACCTCTCTCCTATATAATACCTTGGGATTTGTTTTCACATACATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTCTCTCCTATATAATACCTTGGGATTTGTTTTCACATACATATA  100

seq1  GAGTGTAGATAAATTGACATTTTATTTATTTACCTATTTATATTTAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTAGATAAATTGACATTTTATTTATTTACCTATTTATATTTAAGAT  150

seq1  TTATTTTTAAATTATGTGTATATATTTCTGTGAGTGCACACGTGAGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTAAATTATGTGTATATATTTCTGTGAGTGCACACGTGAGTCCA  200

seq1  AACACCCACAGAATCCAGAAGAAAGTCTATCCATTGGAGGTAGAATTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCACAGAATCCAGAAGAAAGTCTATCCATTGGAGGTAGAATTAGA  250

seq1  TGTGGTTGTGAGCTACCCATTGTGGATACTGAGAACCAATTTGGGTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGTGAGCTACCCATTGTGGATACTGAGAACCAATTTGGGTCCTC  300

seq1  TGAAAGAGTGGTATGTTCTTGTACCTTCTGAGCCATTTCTCCTGCTCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGTGGTATGTTCTTGTACCTTCTGAGCCATTTCTCCTGCTCAGC  350

seq1  AATTGGCATTTTCAAAAGCTCTCTGAGTTGGAGAACCAGTGCTTTAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCATTTTCAAAAGCTCTCTGAGTTGGAGAACCAGTGCTTTAAGGT  400

seq1  GCAAGTGACCCCAGTGTAGGGGAATGCCAGGGCCAGGAAGCGGGAGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGACCCCAGTGTAGGGGAATGCCAGGGCCAGGAAGCGGGAGTGGG  450

seq1  TGGGTTGGTGAGCAGGGGGAGGGGGG  476
      ||||||||||||||||||||||||||
seq2  TGGGTTGGTGAGCAGGGGGAGGGGGG  476

seq1: chrX_36240066_36241204
seq2: B6Ng01-103F18.g_65_1212 (reverse)

seq1  AAAAACTAGTTTCTGTTGGA-CCCTCCAACCCTACATTGTATACAACAAT  49
      |||||||||||| ||||||| |||||||| ||||||||||||   ||| |
seq2  AAAAACTAGTTTTTGTTGGACCCCTCCAA-CCTACATTGTATCACACATT  49

seq1  GGACACAGCCTGACTTAT--CAGGTTGGACATCC--CAAAG-CACTAGGC  94
      | |||||||||||| |||  ||||||||||||||  ||||| ||||||||
seq2  GAACACAGCCTGACCTATTCCAGGTTGGACATCCCACAAAGCCACTAGGC  99

seq1  TGACTTTCTCTCTTTCAGG--AAAAAGAA-TATAATTTCAGTGGCCA-CA  140
      ||||||||| ||||||  |  |||||||| ||||||||||||||||| ||
seq2  TGACTTTCTTTCTTTCCAGAAAAAAAGAATTATAATTTCAGTGGCCACCA  149

seq1  TTTGAAAGTACTCTCTTGCTGTTCTAAGCGGTGCTAGAAGGCAGGAGAAC  190
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTGAAAGTACTCTCTTGCTGTTCTAAGCGGTGCTAGAAGGCAGGAAAAC  199

seq1  AGTAGCCATCTAATGGTGTTGCAGGACATGTATTCTTGTATGACTTCTAC  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCCATCTAATGGTGTTGCAGGACATGTATTCTTGTATGACTTCTAC  249

seq1  TTTTAGTCCTTCAAAAACTTACTGAATGCCTCAGTGATTGAGCTAAATCA  290
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTCCTTC-AAAACTTACTGAATGCCTCAGTGATTGAGCTAAATCA  298

seq1  TCTCCCTGGGGCTTGGCC-TTCTTATCTTACAAGGGAGTGATAGACTGGA  339
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTCCCTGGGGCTTGGCCTTTCTTATCTTACAAGGGAGTGATAGACTGGA  348

seq1  GTATGAGTTCTGCAAACCTGTTGTCCATTCAGTTCCAGGACCGTATACAG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGTTCTGCAAACCTGTTGTCCATTCAGTTCCAGGACCGTATACAG  398

seq1  ATTAGTACAAAATCATTGCACTGCATAAAAATATATGCATTCGTAACCCT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTACAAAATCATTGCACTGCATAAAAATATATGCATTCGTAACCCT  448

seq1  ACAGAAAGTAACAGCCTTGTTGCAAACCATAAGTATAGGTGGAAGCTGAT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGTAACAGCCTTGTTGCAAACCATAAGTATAGGTGGAAGCTGAT  498

seq1  CATAATATTACATGCCTGCAGACAAATGCTCTGAGAAGTGTGGGAATTTG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATATTACATGCCTGCAGACAAATGCTCTGAGAAGTGTGGGAATTTG  548

seq1  AAATAATCACAAAAGAGGCTTTTTATTGCAGCATTCATATCCCAGAAATA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCACAAAAGAGGCTTTTTATTGCAGCATTCATATCCCAGAAATA  598

seq1  TTCAATAAAATGTATATCCTTAGGGCTGGAGAGATGACTCATCAATCAAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAAAATGTATATCCTTAGGGCTGGAGAGATGACTCATCAATCAAA  648

seq1  AGGGTTTGTTGTCTTTTTAGAGGATATAGGGGTTCAATTTCCAGCATCCA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTGTTGTCTTTTTAGAGGATATAGGGGTTCAATTTCCAGCATCCA  698

seq1  CATAGTGGCTTGCAACTCATTGGTAACTCCAGTTCCCGAGAATCTGACAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGGCTTGCAACTCATTGGTAACTCCAGTTCCCGAGAATCTGACAT  748

seq1  TTTCTTCTGGCCTCTGTGGGTACCAGACATGCATGTGGTACACATATATA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTGGCCTCTGTGGGTACCAGACATGCATGTGGTACACATATATA  798

seq1  CATGTAAACAAAACATAAAATAAAATAAACAAGTCTAAAAACTTGTATCC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAACAAAACATAAAATAAAATAAACAAGTCTAAAAACTTGTATCC  848

seq1  TTTAAGAGGAACACAACACTGAAAATAAAATTAAAATTGGTCTTCACAGG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAGGAACACAACACTGAAAATAAAATTAAAATTGGTCTTCACAGG  898

seq1  TCACAGGGGAGCAAATGTGTCTTGTAAAGATGTCGGGATAATAAATGAAA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGGGAGCAAATGTGTCTTGTAAAGATGTCGGGATAATAAATGAAA  948

seq1  TTTAAAACAAAAATAAACAAAAGTGAACAGAAATTTGAAAGAAGGCTAAT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACAAAAATAAACAAAAGTGAACAGAAATTTGAAAGAAGGCTAAT  998

seq1  TATAAGTCAAAGAAAGCTACGCATCTACCAGAAACACACACACACACACA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTCAAAGAAAGCTACGCATCTACCAGAAACACACACACACACACA  1048

seq1  CACACACACAACCTGCATATGACTGTCTAGAACAAGGCAGGAATGATTAA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACAACCTGCATATGACTGTCTAGAACAAGGCAGGAATGATTAA  1098

seq1  AGAACTATCATGCAAAGAAACACAACTTCGAGGATTTATGTCAGGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTATCATGCAAAGAAACACAACTTCGAGGATTTATGTCAGGAATTC  1148