BAC Information

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BAC

Clone NameB6Ng01-103J04
ChromosomeX (Build37)
Map Location 152,048,292 - 152,195,626
singlet/doubletdoublet
Overlap genePtchd1
Upstream geneLOC100040899, LOC667331, LOC100040925, LOC100040937, Magea6, Magea3, LOC626034, Magea8, Magea2, Magea5, Magea1, 1700042B14Rik, LOC245676, Amd-ps1, LOC667369, Sat1, Acot9, LOC667383, Prdx4, LOC667394
Downstream gene4930503H13Rik, LOC640803
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103J04.bB6Ng01-103J04.g
ACCDH912117DH912118
length1,0711,185
definitionDH912117|Mus musculus domesticus DNA, BAC clone: B6Ng01-103J04, 5' end.DH912118|Mus musculus domesticus DNA, BAC clone: B6Ng01-103J04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,048,292 - 152,049,376)(152,194,411 - 152,195,626)
sequence
gaattcagtggcttgttagaagaatgggagcttgaacttggccttcttga
ctccaaatcattctatttataactgaatctaagccttgtttcccaaaatg
tctgctgatcaacatcatcaacattttcttagaacttgatggagatgcag
accaagctggacatggtggctcaacttctaatagtagcacttgtgagcct
aagatagaatcactgcttagggtttgaagtaacctaggctaatgtgagat
cccagagagtgtctataaaaattccccagtagaaagaaaacaaaacaacc
tacagattagcaggtcccactctggaagccattgaatcagaatttatatt
ttagtcctagagttaaacaatagttttatgagatgcgtataagttactta
aaaagtctaagttcaatcaagtaaacactactcagtggattacttaccct
tatacaataaaatcacaagaacagaaccaaaagccaacaactcaaacctt
gcaaacttaaggtattaaatgtcagtgtgtttgagcacttaaatttgtag
ctatagaataataaaggacctttttttcttgagacattcagaaagatttg
acaaagctctgacagtagtgatgtcaagaaagcatcatgggacaggcaaa
atgcatttacttccaaagctgaaaaattgaaagtcctacagattttatta
aattcacagaaatatgatgattttgtactggtgtcatttccttcacttca
tctctgtgactaatattttcagttatcctgattttctcttacaaggagta
ggaataagtagcataagaatgtagatctctataacagtgatgttataacc
aggaaaaccacttgttccagatttcgaaaaagaaaaaaaagtatttcatt
tttgcattgagtatgggtgtggtcaatatttgagacttactccaggcaaa
agaggacatgtgtagaacgaagagttgatttccaggatacttgctgagaa
ctgcagagcatctacttctctttgaatgaactcttactgtgacttaactt
tccgactgtacacaaattggg
gaattcaaaatccaggttacacaaattgaaagtgttaagacatttaagtc
catttttaactgctgctcaataattcttccctcacccaagattaatataa
ctgaccaaagttccctggaaggaaactgattttcctcaatgtttagtatg
ccacctgtgttaataattagaccttacatgcatatggtgtttactaacat
cacttatcaatcattttcactaaagatgaccttcagtacttataatattg
gcaaatgagtaatacaggttcatttttacagattaggaaaatcagtctga
gagtggccaattcatagcaaatatatccactgacatggtcaggtagaaat
cttcaatttaatgtatatagaaaaaagtttgggtcagttggctggataat
catatcaaattctccaccgtcttaaacataaaacacaatacactttgaaa
agcaaaattggcatttcatattgaattaaccacatggaacataactcagg
attccccaaggaagattaatagaagtagaatttgagaaaatacattttga
gtctttgtcaagcacatgggatttaagtttttaaagtttcctgttgttat
tgtttattattcatttttatttttctgaatcaagggttggcccaatgttt
gagggttacacaaaggcaagagtcttctctgaaactgcacaaatcctcaa
gccctcattaagtatttgacataataactttttttaaagctttgctaagt
ttctatccacttagtataatgtatgataattctgtgcaggaaacttactg
aaacactctaaacctacacatgaaatttacttacccctgaaattgacctg
tttcaacactgagctgtattttcagtgacaaattaaaggaacagtttacg
gcctgaatgcaaaagtccctttccctctaaattaaatccatataagtagc
acagaactttacagtcttttatttgaagtttcatatgaagtgatatctgt
tgaatatgctcagtagcatgcacatgatatcacacatactacacgaaata
cactgcatctaatctatccaatcttattaaaagaaagtcagttcaaattc
cagttggtaaattgggagaatactttaaaaatgggaggaaacttattgaa
ctggcttctgtggtggtttataggtttgttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_152048292_152049376
seq2: B6Ng01-103J04.b_41_1111

seq1  GAATTCAGTGGCTTGTTAGAAGAATGGGAGCTTGAACTTGGCCTTCTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGCTTGTTAGAAGAATGGGAGCTTGAACTTGGCCTTCTTGA  50

seq1  CTCCAAATCATTCTATTTATAACTGAATCTAAGCCTTGTTTCCCAAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAATCATTCTATTTATAACTGAATCTAAGCCTTGTTTCCCAAAATG  100

seq1  TCTGCTGATCAACATCATCAACATTTTCTTAGAACTTGATGGAGATGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGATCAACATCATCAACATTTTCTTAGAACTTGATGGAGATGCAG  150

seq1  ACCAAGCTGGACATGGTGGCTCAACTTCTAATAGTAGCACTTGTGAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCTGGACATGGTGGCTCAACTTCTAATAGTAGCACTTGTGAGCCT  200

seq1  AAGATAGAATCACTGCTTAGGGTTTGAAGTAACCTAGGCTAATGTGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGAATCACTGCTTAGGGTTTGAAGTAACCTAGGCTAATGTGAGAT  250

seq1  CCCAGAGAGTGTCTATAAAAATTCCCCAGTAGAAAGAAAACAAAACAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGAGTGTCTATAAAAATTCCCCAGTAGAAAGAAAACAAAACAACC  300

seq1  TACAGATTAGCAGGTCCCACTCTGGAAGCCATTGAATCAGAATTTATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATTAGCAGGTCCCACTCTGGAAGCCATTGAATCAGAATTTATATT  350

seq1  TTAGTCCTAGAGTTAAACAATAGTTTTATGAGATGCGTATAAGTTACTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCTAGAGTTAAACAATAGTTTTATGAGATGCGTATAAGTTACTTA  400

seq1  AAAAGTCTAAGTTCAATCAAGTAAACACTACTCAGTGGATTACTTACCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCTAAGTTCAATCAAGTAAACACTACTCAGTGGATTACTTACCCT  450

seq1  TATACAATAAAATCACAAGAACAGAACCAAAAGCCAACAACTCAAACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAATAAAATCACAAGAACAGAACCAAAAGCCAACAACTCAAACCTT  500

seq1  GCAAACTTAAGGTATTAAATGTCAGTGTGTTTGAGCACTTAAATTTGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTTAAGGTATTAAATGTCAGTGTGTTTGAGCACTTAAATTTGTAG  550

seq1  CTATAGAATAATAAAGGACCTTTTTTTCTTGAGACATTCAGAAAGATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAATAATAAAGGACCTTTTTTTCTTGAGACATTCAGAAAGATTTG  600

seq1  ACAAAGCTCTGACAGTAGTGATGTCAAGAAAGCATCATGGGACAGGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCTCTGACAGTAGTGATGTCAAGAAAGCATCATGGGACAGGCAAA  650

seq1  ATGCATTTACTTCCAAAGCTGAAAAATTGAAAGTCCTACAGATTTTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTACTTCCAAAGCTGAAAAATTGAAAGTCCTACAGATTTTATTA  700

seq1  AATTCACAGAAATATGATGATTTTGTACTGGTGTCATTTCCTTCACTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACAGAAATATGATGATTTTGTACTGGTGTCATTTCCTTCACTTCA  750

seq1  TCTCTGTGACTAATATTTTCAGTTATCCTGATTTTCTCTTACAAGGAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGACTAATATTTTCAGTTATCCTGATTTTCTCTTACAAGGAGTA  800

seq1  GGAATAAGTAGCATAAGAATGTAGATCTCTATAACAGTGATGTTATAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAGTAGCATAAGAATGTAGATCTCTATAACAGTGATGTTATAACC  850

seq1  AGGAAAACCACTTGTTCCAGATTTCGAAAAAGAAAAAAAAGTATTTCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACCACTTGTTCCAGATTTCGAAAAAGAAAAAAAAGTATTTCATT  900

seq1  TTTGCATTTGAGTATGGGTGTGGTCAATATTTTGAGACTTACTCCAGGCA  950
      |||||| |||||||||||||||||||||| ||||||||||||||||||| 
seq2  TTTGCA-TTGAGTATGGGTGTGGTCAATA-TTTGAGACTTACTCCAGGC-  947

seq1  AAAAGAGGACATGTGTAGAACGAAGAGTTGATTTCCAGGATACTTGCTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGACATGTGTAGAACGAAGAGTTGATTTCCAGGATACTTGCTGA  997

seq1  GAACTGCAGAGCATTCTACCTTCTCCTTTGAAATGAACTCTTTACTGTGG  1050
      ||||||||||||| |||| ||||| ||||| ||||||||| |||||||| 
seq2  GAACTGCAGAGCA-TCTA-CTTCT-CTTTG-AATGAACTC-TTACTGTG-  1041

seq1  AACTTTATACCTTCCCGAACTGTACACAAATTGGG  1085
       |||   || ||| ||| |||||||||||||||||
seq2  -ACT---TAACTTTCCG-ACTGTACACAAATTGGG  1071

seq1: chrX_152194411_152195626
seq2: B6Ng01-103J04.g_66_1250 (reverse)

seq1  AAAAAAACAAAACTATAAACCACACACAGAAGCAATGTCTAAATAGATTT  50
      ||||||||||| ||||||||||| ||||||||| |  ||  |||| | ||
seq2  AAAAAAACAAACCTATAAACCAC-CACAGAAGCCAGTTC--AATA-AGTT  46

seq1  CCCTCCCAATTTTTTTAAAGTTATCTCCCAAATTTACCAACTGGAAATTT  100
       |||||||   ||||||||||  |||||| |||||||||||||| |||||
seq2  TCCTCCCA---TTTTTAAAGTATTCTCCC-AATTTACCAACTGG-AATTT  91

seq1  GAACTTGACTTTTCTTTTTAATTAAAGGATTGGATTAGATTTAGATGCAG  150
      |||| |||||||   |||||||   | ||||||| |||| ||||||||||
seq2  GAAC-TGACTTT--CTTTTAAT---AAGATTGGA-TAGA-TTAGATGCAG  133

seq1  GTGGTATTTTCGTTGGTAGTATGTGGTGATAATCATTGTTGCCATGGCTA  200
         ||| ||||||  ||||||||| ||||| |||| |||   ||| ||||
seq2  --TGTA-TTTCGT--GTAGTATGT-GTGAT-ATCA-TGT--GCAT-GCTA  172

seq1  CCTGAAGCATATTCAACAGAATATCACTTCATATTGAAACTTCAAAT-AA  249
       ||| |||||||||||||| ||||||||||||| ||||||||||||| ||
seq2  -CTG-AGCATATTCAACAG-ATATCACTTCATA-TGAAACTTCAAATAAA  218

seq1  AGACTGTAAAAGTTCTGTGCTACTTATATGGATTTAATTTAGAGGGAAAG  299
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGT-AAAGTTCTGTGCTACTTATATGGATTTAATTTAGAGGGAAAG  267

seq1  GGACTTTTGCATTCAGGCCGTAAACTGTTCC-TTAATTTGTCACTGAAAA  348
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGACTTTTGCATTCAGGCCGTAAACTGTTCCTTTAATTTGTCACTGAAAA  317

seq1  TACAGCTCAGTGTTTGAAACAGGTCAATTTCAGGGGTAAGTAAATTTCAT  398
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TACAGCTCAGTG-TTGAAACAGGTCAATTTCAGGGGTAAGTAAATTTCAT  366

seq1  GTGTAGGTTTAGAGTGTTTCAGTAAGTTTCCTGCACAGAATTATCATACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGTTTAGAGTGTTTCAGTAAGTTTCCTGCACAGAATTATCATACA  416

seq1  TTATACTAAGTGGATAGAAACTTAGCAAAGCTTT-AAAAAAGTTATTATG  497
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTATACTAAGTGGATAGAAACTTAGCAAAGCTTTAAAAAAAGTTATTATG  466

seq1  TCAAATACTTAATGAGGGCTTGAGGATTTGTGCAGTTTCAGAGAAGACTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATACTTAATGAGGGCTTGAGGATTTGTGCAGTTTCAGAGAAGACTC  516

seq1  TTGCCTTTGTGTAACCCTCAAACATTGGGCCAACCCTTGATTCAGAAAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTGTGTAACCCTCAAACATTGGGCCAACCCTTGATTCAGAAAAA  566

seq1  TAAAAATGAATAATAAACAATAACAACAGGAAACTTTAAAAACTTAAATC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGAATAATAAACAATAACAACAGGAAACTTTAAAAACTTAAATC  616

seq1  CCATGTGCTTGACAAAGACTCAAAATGTATTTTCTCAAATTCTACTTCTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGCTTGACAAAGACTCAAAATGTATTTTCTCAAATTCTACTTCTA  666

seq1  TTAATCTTCCTTGGGGAATCCTGAGTTATGTTCCATGTGGTTAATTCAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTCCTTGGGGAATCCTGAGTTATGTTCCATGTGGTTAATTCAAT  716

seq1  ATGAAATGCCAATTTTGCTTTTCAAAGTGTATTGTGTTTTATGTTTAAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGCCAATTTTGCTTTTCAAAGTGTATTGTGTTTTATGTTTAAGA  766

seq1  CGGTGGAGAATTTGATATGATTATCCAGCCAACTGACCCAAACTTTTTTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGAGAATTTGATATGATTATCCAGCCAACTGACCCAAACTTTTTTC  816

seq1  TATATACATTAAATTGAAGATTTCTACCTGACCATGTCAGTGGATATATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACATTAAATTGAAGATTTCTACCTGACCATGTCAGTGGATATATT  866

seq1  TGCTATGAATTGGCCACTCTCAGACTGATTTTCCTAATCTGTAAAAATGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGAATTGGCCACTCTCAGACTGATTTTCCTAATCTGTAAAAATGA  916

seq1  ACCTGTATTACTCATTTGCCAATATTATAAGTACTGAAGGTCATCTTTAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTATTACTCATTTGCCAATATTATAAGTACTGAAGGTCATCTTTAG  966

seq1  TGAAAATGATTGATAAGTGATGTTAGTAAACACCATATGCATGTAAGGTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGATTGATAAGTGATGTTAGTAAACACCATATGCATGTAAGGTC  1016

seq1  TAATTATTAACACAGGTGGCATACTAAACATTGAGGAAAATCAGTTTCCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTAACACAGGTGGCATACTAAACATTGAGGAAAATCAGTTTCCT  1066

seq1  TCCAGGGAACTTTGGTCAGTTATATTAATCTTGGGTGAGGGAAGAATTAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGAACTTTGGTCAGTTATATTAATCTTGGGTGAGGGAAGAATTAT  1116

seq1  TGAGCAGCAGTTAAAAATGGACTTAAATGTCTTAACACTTTCAATTTGTG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGCAGTTAAAAATGGACTTAAATGTCTTAACACTTTCAATTTGTG  1166

seq1  TAACCTGGATTTTGAATTC  1216
      |||||||||||||||||||
seq2  TAACCTGGATTTTGAATTC  1185