BAC Information

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BAC

Clone NameB6Ng01-103L24
ChromosomeX (Build37)
Map Location 11,701,447 - 11,859,431
singlet/doubletdoublet
Overlap gene2900008C10Rik, LOC385323
Upstream geneLOC100042922, LOC100042927, LOC100042929, LOC100042931, OTTMUSG00000016790, LOC100042939, LOC100042943, LOC100042944, LOC100042946, EG236663, 8430439B09Rik, LOC669520, Rpl23a-ps, LOC100043945, Bcor
Downstream geneLOC100043946, LOC628441, Atp6ap2, LOC668986, EG245347, 1810030O07Rik, Crsp2, LOC668987, LOC245350, Ppia-psx_132.1, Usp9x, LOC100043000, LOC100043002, LOC675380, Ddx3x
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103L24.bB6Ng01-103L24.g
ACCDH912244DH912245
length980570
definitionDH912244|Mus musculus domesticus DNA, BAC clone: B6Ng01-103L24, 5' end.DH912245|Mus musculus domesticus DNA, BAC clone: B6Ng01-103L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,701,447 - 11,702,425)(11,858,870 - 11,859,431)
sequence
gaattcatgagggcttaaagaagaccccaagatctttctagatccacaac
caccacctttgttcgcaaactagtcctttagccctagttctgatcatcgg
gatcctgccacctaggcctaggcttcagctgatcgatcattctcttgttc
tcccgtgcctcgtcagggtaactttaccatacacactcagtcactggatt
ctttgacacatctgttcctttctgtctccgcggccatttatacagtccca
gctcctgagtacacacacaggcctgtggcacatgagcaatgactccaaag
ccacaaagggcacttggatctcccccccacccccgcaccccctccccacc
ccctgcagccagtgttgtctagagctcagataaacctccctcttgcttcc
agatgatgacaaggcctgggtttaggggcctgtggtctctggatttcccc
cttagttcccatttccccttatttccttgtggccattgatgtggtgtctg
aagctctgcttagggtaaacaaagtgatcagacggctccctttcttcccg
ctctcagaaaagtcactttccctgcttaagtaatgactgccttttcctcc
cagcctcctctcaacccacatatatttagtgtaagctgccctgggtagag
tttaattaggtaccaactcacccaggggcaaataccaaggacccctctca
ggctgaacaaatgggacctatgcttgatgtagccagcctacccctggctg
ataagtgactggcggctagcagtagagggctgtccattctgagctaatga
ttgccttagcaccaagtgatggaaaatccctggcaggctggcaagctgca
agggctaagccagggacaattgtatggaccagtttaacatggctgcaggg
aagggatggcagaaggaatgcagcctgtgtgtgtgtgtgtgtgtgcgcta
cacgtctcatgtgctagtgcttgcttgctt
cagagaagcaggttctaatacccatgaaagaacgcctcagcaacaggaca
gatgcacttgccatctacagtgagagcaagcaggaaaaaaaaccaaagct
tccttcttctatgtcctttcatatgggcagccgccagaaggtgtggaatt
taagagttttttttcttaccctctaacaatccaatcaaagcagtccccta
ggcatacccagctgatttgataagttgattctagatgtaatcaagtgaac
aacattcttcagagagtccctactttctgtacatttcccaagagatgccc
atagtggtttctagtgtcatacagaagattgctgtttagtatgtgtatat
ccaactaccatttttaatttttaaaaaaatctcattttttaactgtagaa
aatgctagggctgtaactcagtgacaggatactcatctagaacgctctag
accctggggttcatcctcagtaccacagtgggccacgttccaaccccttt
tcatgtctttaaagaaatgaagtcagaaaaacagagtaaaggataatggg
aaggatgtaggggagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_11701447_11702425
seq2: B6Ng01-103L24.b_44_1023

seq1  GAATTCATGAGGGCTTAAAGAAGACCCCAAGATCTTTCTAGATCCACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGGGCTTAAAGAAGACCCCAAGATCTTTCTAGATCCACAAC  50

seq1  CACCACCTTTGTTCGCAAACTAGTCCTTTAGCCCTAGTTCTGATCATCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCTTTGTTCGCAAACTAGTCCTTTAGCCCTAGTTCTGATCATCGG  100

seq1  GATCCTGCCACCTAGGCCTAGGCTTCAGCTGATCGATCATTCTCTTGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGCCACCTAGGCCTAGGCTTCAGCTGATCGATCATTCTCTTGTTC  150

seq1  TCCCGTGCCTCGTCAGGGTAACTTTACCATACACACTCAGTCACTGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTGCCTCGTCAGGGTAACTTTACCATACACACTCAGTCACTGGATT  200

seq1  CTTTGACACATCTGTTCCTTTCTGTCTCCGCGGCCATTTATACAGTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACACATCTGTTCCTTTCTGTCTCCGCGGCCATTTATACAGTCCCA  250

seq1  GCTCCTGAGTACACACACAGGCCTGTGGCACATGAGCAATGACTCCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGAGTACACACACAGGCCTGTGGCACATGAGCAATGACTCCAAAG  300

seq1  CCACAAAGGGCACTTGGATCTCCCCCCCACCCCCGCACCCCCTCCCCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAGGGCACTTGGATCTCCCCCCCACCCCCGCACCCCCTCCCCACC  350

seq1  CCCTGCAGCCAGTGTTGTCTAGAGCTCAGATAAACCTCCCTCTTGCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAGCCAGTGTTGTCTAGAGCTCAGATAAACCTCCCTCTTGCTTCC  400

seq1  AGATGATGACAAGGCCTGGGTTTAGGGGCCTGTGGTCTCTGGATTTCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATGACAAGGCCTGGGTTTAGGGGCCTGTGGTCTCTGGATTTCCCC  450

seq1  CTTAGTTCCCATTTCCCCTTATTTCCTTGTGGCCATTGATGTGGTGTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTCCCATTTCCCCTTATTTCCTTGTGGCCATTGATGTGGTGTCTG  500

seq1  AAGCTCTGCTTAGGGTAAACAAAGTGATCAGACGGCTCCCTTTCTTCCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTGCTTAGGGTAAACAAAGTGATCAGACGGCTCCCTTTCTTCCCG  550

seq1  CTCTCAGAAAAGTCACTTTCCCTGCTTAAGTAATGACTGCCTTTTCCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGAAAAGTCACTTTCCCTGCTTAAGTAATGACTGCCTTTTCCTCC  600

seq1  CAGCCTCCTCTCAACCCACATATATTTAGTGTAAGCTGCCCTGGGTAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCCTCTCAACCCACATATATTTAGTGTAAGCTGCCCTGGGTAGAG  650

seq1  TTTAATTAGGTACCAACTCACCCAGGGGCAAATACCAAGGACCCCTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTAGGTACCAACTCACCCAGGGGCAAATACCAAGGACCCCTCTCA  700

seq1  GGCTGAACAAATGGGACCTATGCTTGATGTAGCCAGCCTACCCCTGGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAACAAATGGGACCTATGCTTGATGTAGCCAGCCTACCCCTGGCTG  750

seq1  ATAAGTGACTGGCGGCTAGCAGGTAGAGGGCTGTCCATTCTGAGCTAATG  800
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATAAGTGACTGGCGGCTAGCA-GTAGAGGGCTGTCCATTCTGAGCTAATG  799

seq1  ATTGCCTTAGGCACCAAGTGATGGAAAAT-CCTGGCAGGCTGGCAAGCTG  849
      ||||||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  ATTGCCTTA-GCACCAAGTGATGGAAAATCCCTGGCAGGCTGGCAAGCTG  848

seq1  C-AGGGCTAAGCCAGGGACAATTGTATGGACCAGTTTAACATGGCTGCAG  898
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCTAAGCCAGGGACAATTGTATGGACCAGTTTAACATGGCTGCAG  898

seq1  GG-AGGGATGGCAGAAGGAATGCAGCCTGTGTGTGTGTGTGTGTGTGCGC  947
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGATGGCAGAAGGAATGCAGCCTGTGTGTGTGTGTGTGTGTGCGC  948

seq1  ATACACG-CACATGTGCGAGTGCTTGCTTGCTT  979
       |||||| | ||||||| |||||||||||||||
seq2  -TACACGTCTCATGTGCTAGTGCTTGCTTGCTT  980

seq1: chrX_11858870_11859431
seq2: B6Ng01-103L24.g_80_641 (reverse)

seq1  CCTCCCTCCCCTACATCCTTCCCATTATCCTTTACTCTGTTTTTCTGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCCCCTACATCCTTCCCATTATCCTTTACTCTGTTTTTCTGACT  50

seq1  TCATTTCTTTAAAGACATGAAAAGGGGTTGGAACGTGGCCCACTGTGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTTTAAAGACATGAAAAGGGGTTGGAACGTGGCCCACTGTGGTA  100

seq1  CTGAGGATGAACCCCAGGGTCTAGAGCGTTCTAGATGAGTATCCTGTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGATGAACCCCAGGGTCTAGAGCGTTCTAGATGAGTATCCTGTCAC  150

seq1  TGAGTTACAGCCCTAGCATTTTCTACAGTTAAAAAATGAGATTTTTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTACAGCCCTAGCATTTTCTACAGTTAAAAAATGAGATTTTTTTAA  200

seq1  AAATTAAAAATGGTAGTTGGATATACACATACTAAACAGCAATCTTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAAATGGTAGTTGGATATACACATACTAAACAGCAATCTTCTGT  250

seq1  ATGACACTAGAAACCACTATGGGCATCTCTTGGGAAATGTACAGAAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACTAGAAACCACTATGGGCATCTCTTGGGAAATGTACAGAAAGTA  300

seq1  GGGACTCTCTGAAGAATGTTGTTCACTTGATTACATCTAGAATCAACTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCTCTGAAGAATGTTGTTCACTTGATTACATCTAGAATCAACTTA  350

seq1  TCAAATCAGCTGGGTATGCCTAGGGGACTGCTTTGATTGGATTGTTAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCAGCTGGGTATGCCTAGGGGACTGCTTTGATTGGATTGTTAGAG  400

seq1  GGTAAGAAAAAAAACTCTTAAATTCCACACCTTCTGGCGGCTGCCCATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAAAAAAAACTCTTAAATTCCACACCTTCTGGCGGCTGCCCATAT  450

seq1  GAAAGGACATAGAAGAAGGAAGCTTTGGTTTTTTTTCCTGCTTGCTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGACATAGAAGAAGGAAGCTTTGGTTTTTTTTCCTGCTTGCTCTCA  500

seq1  CTGTAGATGGCAAGTGCATCTGTCCTGTTGCTGAGGCGTTCTTTCATGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGATGGCAAGTGCATCTGTCCTGTTGCTGAGGCGTTCTTTCATGGG  550

seq1  TATTAGAACCTG  562
      ||||||||||||
seq2  TATTAGAACCTG  562