BAC Information

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BAC

Clone NameB6Ng01-104F01
ChromosomeX (Build37)
Map Location 91,633,804 - 91,786,727
singlet/doubletdoublet
Overlap gene0610008C08Rik, EG668148, Maged1
Upstream genePola1, EG629581, Pcyt1b, Pdk3, EG668103, LOC100042041, AU015836, EG245516, LOC100042062, EG629591, Zfx, Eif2s3x, Klhl15, LOC385495, LOC670263, LOC100042098, LOC631145
Downstream geneLOC668150, EG385499, EG668156, Gspt2, LOC385500, Zxdb, LOC631331, EG631319, Zxda, Gm371, 9630042H07Rik, Arhgef9, LOC619688, LOC100042189, 2810002O09Rik, Asb12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104F01.bB6Ng01-104F01.g
ACCDH912653DH912654
length1,1581,062
definitionDH912653|Mus musculus domesticus DNA, BAC clone: B6Ng01-104F01, 5' end.DH912654|Mus musculus domesticus DNA, BAC clone: B6Ng01-104F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,785,567 - 91,786,727)(91,633,804 - 91,634,861)
sequence
gtcctatgtcttttccttctgtagtgtaatgcccagctcctctctcccac
acccccccccttaggctctgctcttgccagggagacgagagctatggctc
agaaaccggacggcggtgcaggcctccgcggcttccaggtgaggaccccg
ctcccaattcccccatttttcccctgctgacagtttacgcccacccccgg
ccccttaggtcgcgcgaatggcaggatctgattttgcccttcttccggcc
tagacaccgcgggctctcagatttctagcgtttatcgaatgggggggagg
ggcggcccttttcagccatcggtccctgcttagagaaaggggagaccctg
ttagtcagggcattctgcccagagaatgcgggttgggtaaggaaccattt
tttttccataaccctgacgcgtgtagagcagtctgtcgccccatccccca
acctctcgcctccaccctccctttctccacgccgcgagactccccctcca
ccctctcggcttatcctccttgattcctccctcctcgggtcttgagctcc
ccacctcaagcctaaccagtccgtctctaaacccatttggggctcagagc
ttgcaccacattccgcaccagcccctgctgccacagactgtccctcacct
tgccctgccccctctacccttaattaaattttgttcgcgccccgcctccc
tttgacccgcctctgcccccacgtctgagtactgtgacgcctgtctacag
ctcccctgctgcgttgcgccgcgccccccccctcctctggtctgccatgt
aaaggctcagagattgaaatgttgcccctccttgtgttgcaggctgaggc
ctctgttgaagacagcgccttgcttgtgcagacccttgatggaagccatt
ccagatctccgaggcctccgcccaccagccaggccacagcagctgccagt
gggccaaatgctagtccccagagttcacagcccccaactgccattgagaa
ggctgataccgaaggtttcagcagctgctgcaggcttagacagctttaag
gcccagatgcaccactataggggccaaatgattactcttcaggcacgtta
tgccaagagatggccaagaatcagtctatggcggcccttagtcagaatgc
acccctaa
gaattcagctggtcttcctggaaaagctgtataaccaacacatagctggc
tcaatgtgatcagtgtttagagacaggactcaggcttttccaggaagcat
tttaaacatagggaaggctaaggctaagttgagagagaatgaagtcatga
cctagcttcaagtcatttattacttcatctggtattaaacaactcttggc
agtattcttttttaattattaatttttaaggttagcatgcaaagtaatgg
gtttcaccgtgacaacttcataggtatgtgtcattgtacctggtggtggt
cttaacaaagatctgttggataagtatctactgttatcaccaagagaagg
taacatataagtctaagcaatcaaccgtgagagaacatatattgtgtgtg
ggggacagaaaacacaggcatgaaggatcaaatgcttagggtgagatagc
aggggtggtaccgagactgacttctgatggcaccttagagaaggaggcag
tgtctatgcggatgacttaggatgagcgttcctgaggaggcactcagtgc
ctgaggaggctccagtctgctgtgagactgcttccatagacaggagagga
aaggagagagcatgcaaatccaagtcttaagacatgcgtaggcatggcaa
ataaggtcatgtgttgtattatttacttcctgagtaggctcactgttgta
tttatttttaaattattaaattctatgaccagcaagagtggctatttact
tctagcatcaatcttgttctactttgctttttatagtttgtgataaaacg
ccatgaccaaagcaacttggggaggaaaggggttcctcctcagcttaaca
gtttacaagctaaccttgagggaagtaagggtagcaactgaagcagaggc
cattggaggagtgctcctttctctacttgctccccggaagcttgcctcag
ctgagttcctttcttttttcttttctacactaatgcaatttaatttaatt
ctgtccttgttgagaatagatttttttatcctataatataccctgaatac
aagtttccctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_91785567_91786727
seq2: B6Ng01-104F01.b_52_1209 (reverse)

seq1  TTAGGGGTGCCATTCTGTGACTTAAAGGCCGCCTTAGACTGATTCTTGGG  50
      ||||||||| |||||  |||| ||| ||||||| ||||||||||||||| 
seq2  TTAGGGGTG-CATTC--TGAC-TAAGGGCCGCCATAGACTGATTCTTGGC  46

seq1  CATCTCCTTGGCATTACGTGCCTG-AGAGTAATCATTTGGCCCCT-TTGT  98
      ||||| |||||||| ||||||||| |||||||||||||||||||| | ||
seq2  CATCT-CTTGGCATAACGTGCCTGAAGAGTAATCATTTGGCCCCTATAGT  95

seq1  GGTGGCATTCTGGGCCTTAAAGCCTGTCTTAGGCCTGGCAGCAGCTGCTG  148
      ||| ||| |||||||||||||| ||||| || |||| |||||||||||||
seq2  GGT-GCA-TCTGGGCCTTAAAG-CTGTC-TAAGCCT-GCAGCAGCTGCTG  140

seq1  AAACC-TCAGTATCAGCCTTCTCATTGGCAGTTGGGGGCTGTGAACTCTG  197
      ||||| || ||||||||||||||| |||||||||||||||||||||||||
seq2  AAACCTTCGGTATCAGCCTTCTCAATGGCAGTTGGGGGCTGTGAACTCTG  190

seq1  GGGACTAGCATTTGGCCCACTGGCAGCTGCTGTGGCCTGGCTGGTGGGCG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTAGCATTTGGCCCACTGGCAGCTGCTGTGGCCTGGCTGGTGGGCG  240

seq1  GA-GCCTCGGAGATCTGG-ATGGCTTCCATCAA-GGTCTGCACAAGCAAG  294
      || ||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  GAGGCCTCGGAGATCTGGAATGGCTTCCATCAAGGGTCTGCACAAGCAAG  290

seq1  GCGCTGTCTTCAACAGAGGCCTCAGCCTGCAAACAC-AGGAGGGGCAACA  343
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  GCGCTGTCTTCAACAGAGGCCTCAGCCTGC-AACACAAGGAGGGGCAACA  339

seq1  TTTCAATCTCTGAGCC-TTACATGGCAGACCAGAGGAGGGGGGGGGCGCG  392
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTCAATCTCTGAGCCTTTACATGGCAGACCAGAGGAGGGGGGGGGCGCG  389

seq1  GCGCAACGCAGCAGGGGAGCTGTAGACAGGCGTCACAGTACTCAGACGTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAACGCAGCAGGGGAGCTGTAGACAGGCGTCACAGTACTCAGACGTG  439

seq1  GGGGCAGAGGCGGGTCAAAGGGAGGCGGGGCGCGAACAAAATTTAATTAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGAGGCGGGTCAAAGGGAGGCGGGGCGCGAACAAAATTTAATTAA  489

seq1  GGGTAGAGGGGGCAGGGCAAGGTGAGGGACAGTCTGTGGCAGCAGGGGCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGAGGGGGCAGGGCAAGGTGAGGGACAGTCTGTGGCAGCAGGGGCT  539

seq1  GGTGCGGAATGTGGTGCAAGCTCTGAGCCCCAAATGGGTTTAGAGACGGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCGGAATGTGGTGCAAGCTCTGAGCCCCAAATGGGTTTAGAGACGGA  589

seq1  CTGGTTAGGCTTGAGGTGGGGAGCTCAAGACCCGAGGAGGGAGGAATCAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTAGGCTTGAGGTGGGGAGCTCAAGACCCGAGGAGGGAGGAATCAA  639

seq1  GGAGGATAAGCCGAGAGGGTGGAGGGGGAGTCTCGCGGCGTGGAGAAAGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATAAGCCGAGAGGGTGGAGGGGGAGTCTCGCGGCGTGGAGAAAGG  689

seq1  GAGGGTGGAGGCGAGAGGTTGGGGGATGGGGCGACAGACTGCTCTACACG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGGAGGCGAGAGGTTGGGGGATGGGGCGACAGACTGCTCTACACG  739

seq1  CGTCAGGGTTATGGAAAAAAAATGGTTCCTTACCCAACCCGCATTCTCTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGGGTTATGGAAAAAAAATGGTTCCTTACCCAACCCGCATTCTCTG  789

seq1  GGCAGAATGCCCTGACTAACAGGGTCTCCCCTTTCTCTAAGCAGGGACCG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAATGCCCTGACTAACAGGGTCTCCCCTTTCTCTAAGCAGGGACCG  839

seq1  ATGGCTGAAAAGGGCCGCCCCTCCCCCCCATTCGATAAACGCTAGAAATC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGAAAAGGGCCGCCCCTCCCCCCCATTCGATAAACGCTAGAAATC  889

seq1  TGAGAGCCCGCGGTGTCTAGGCCGGAAGAAGGGCAAAATCAGATCCTGCC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCCCGCGGTGTCTAGGCCGGAAGAAGGGCAAAATCAGATCCTGCC  939

seq1  ATTCGCGCGACCTAAGGGGCCGGGGGTGGGCGTAAACTGTCAGCAGGGGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGCGCGACCTAAGGGGCCGGGGGTGGGCGTAAACTGTCAGCAGGGGA  989

seq1  AAAATGGGGGAATTGGGAGCGGGGTCCTCACCTGGAAGCCGCGGAGGCCT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGGGAATTGGGAGCGGGGTCCTCACCTGGAAGCCGCGGAGGCCT  1039

seq1  GCACCGCCGTCCGGTTTCTGAGCCATAGCTCTCGTCTCCCTGGCAAGAGC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCGCCGTCCGGTTTCTGAGCCATAGCTCTCGTCTCCCTGGCAAGAGC  1089

seq1  AGAGCCTAAGGGGGGGGGTGTGGGAGAGAGGAGCTGGGCATTACACTACA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTAAGGGGGGGGGTGTGGGAGAGAGGAGCTGGGCATTACACTACA  1139

seq1  GAAGGAAAAGACATAGGAC  1161
      |||||||||||||||||||
seq2  GAAGGAAAAGACATAGGAC  1158

seq1: chrX_91633804_91634861
seq2: B6Ng01-104F01.g_68_1129

seq1  GAATTCAGCTGGTCTTCCTGGAAAAGCTGTATAACCAACACATAGCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGGTCTTCCTGGAAAAGCTGTATAACCAACACATAGCTGGC  50

seq1  TCAATGTGATCAGTGTTTAGAGACAGGACTCAGGCTTTTCCAGGAAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTGATCAGTGTTTAGAGACAGGACTCAGGCTTTTCCAGGAAGCAT  100

seq1  TTTAAACATAGGGAAGGCTAAGGCTAAGTTGAGAGAGAATGAAGTCATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACATAGGGAAGGCTAAGGCTAAGTTGAGAGAGAATGAAGTCATGA  150

seq1  CCTAGCTTCAAGTCATTTATTACTTCATCTGGTATTAAACAACTCTTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTTCAAGTCATTTATTACTTCATCTGGTATTAAACAACTCTTGGC  200

seq1  AGTATTCTTTTTTAATTATTAATTTTTAAGGTTAGCATGCAAAGTAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCTTTTTTAATTATTAATTTTTAAGGTTAGCATGCAAAGTAATGG  250

seq1  GTTTCACCGTGACAACTTCATAGGTATGTGTCATTGTACCTGGTGGTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACCGTGACAACTTCATAGGTATGTGTCATTGTACCTGGTGGTGGT  300

seq1  CTTAACAAAGATCTGTTGGATAAGTATCTACTGTTATCACCAAGAGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACAAAGATCTGTTGGATAAGTATCTACTGTTATCACCAAGAGAAGG  350

seq1  TAACATATAAGTCTAAGCAATCAACCGTGAGAGAACATATATTGTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATATAAGTCTAAGCAATCAACCGTGAGAGAACATATATTGTGTGTG  400

seq1  GGGGACAGAAAACACAGGCATGAAGGATCAAATGCTTAGGGTGAGATAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAGAAAACACAGGCATGAAGGATCAAATGCTTAGGGTGAGATAGC  450

seq1  AGGGGTGGTACCGAGACTGACTTCTGATGGCACCTTAGAGAAGGAGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGGTACCGAGACTGACTTCTGATGGCACCTTAGAGAAGGAGGCAG  500

seq1  TGTCTATGCGGATGACTTAGGATGAGCGTTCCTGAGGAGGCACTCAGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATGCGGATGACTTAGGATGAGCGTTCCTGAGGAGGCACTCAGTGC  550

seq1  CTGAGGAGGCTCCAGTCTGCTGTGAGACTGCTTCCATAGACAGGAGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAGGCTCCAGTCTGCTGTGAGACTGCTTCCATAGACAGGAGAGGA  600

seq1  AAGGAGAGAGCATGCAAATCCAAGTCTTAAGACATGCGTAGGCATGGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGAGCATGCAAATCCAAGTCTTAAGACATGCGTAGGCATGGCAA  650

seq1  ATAAGGTCATGTGTTGTATTATTTACTTCCTGAGTAGGCTCACTGTTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTCATGTGTTGTATTATTTACTTCCTGAGTAGGCTCACTGTTGTA  700

seq1  TTTATTTTTAAATTATTAAATTCTATGACCAGCAAGAGTGGCTATTTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTAAATTATTAAATTCTATGACCAGCAAGAGTGGCTATTTACT  750

seq1  TCTAGCATCAATCTTGTTCTACTTTGCTTTTTATAG-TTGTGATAAAACG  799
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTAGCATCAATCTTGTTCTACTTTGCTTTTTATAGTTTGTGATAAAACG  800

seq1  CCATGACCAAAGCAACTTGGGGAGGAAA-GGGTTCATCC-CAGCTTAACA  847
      |||||||||||||||||||||||||||| |||||| ||| ||||||||||
seq2  CCATGACCAAAGCAACTTGGGGAGGAAAGGGGTTCCTCCTCAGCTTAACA  850

seq1  GTTTACAAGCTACCCTGGAGGGAAGTTAGGGTAGCAACTGAAGCAGAGGC  897
      |||||||||||| ||| ||||||||| |||||||||||||||||||||||
seq2  GTTTACAAGCTAACCTTGAGGGAAGTAAGGGTAGCAACTGAAGCAGAGGC  900

seq1  CA-TGGAGGAGTGCTCCTTTCTC-ACTTGCTCCCC-GTAGCTTG-CTCAG  943
      || |||||||||||||||||||| ||||||||||| | |||||| |||||
seq2  CATTGGAGGAGTGCTCCTTTCTCTACTTGCTCCCCGGAAGCTTGCCTCAG  950

seq1  CCTGAGTTCCTTTCTTTTTCTTTTTCTAACACTAATGCAATTTTATTTTA  993
       ||||||||||||||||||  |||||| ||||||||||||||| |||| |
seq2  -CTGAGTTCCTTTCTTTTTTCTTTTCT-ACACTAATGCAATTTAATTTAA  998

seq1  TTTTTTTCCTTTGTTGAAGATAGATTTTTTT-TCACATAATATACCCTGA  1042
      || | |  | |||||||  |||||||||||| ||  ||||||||||||||
seq2  TTCTGT--CCTTGTTGAGAATAGATTTTTTTATCCTATAATATACCCTGA  1046

seq1  TTACAGTTTTCCCTCC  1058
       ||||  |||||||||
seq2  ATACAAGTTTCCCTCC  1062