BAC Information

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BAC

Clone NameB6Ng01-104K07
ChromosomeX (Build37)
Map Location 34,532,282 - 34,681,313
singlet/doubletdoublet
Overlap geneAnkrd58, Rpl39, Upf3b, 2610020O08Rik
Upstream geneDock11, Il13ra1, Zcchc12, LOC547166, Lonrf3, EG621901, Pgrmc1, B230333C21Rik, LOC621983, Slc25a43, Slc25a5, C330007P06Rik, Ube2a, Nkrf, Sept6
Downstream geneAkap14, Ndufa1, Rnf113a1, Gm9, Rhox1, Rhox2, Rhox3, Rhox4a, LOC100039913, Rhox4b, LOC100039948, Rhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311, Rhox6, Rhox7, Rhox8, LOC436198, Rhox9, LOC100039620, 4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331, Atp1b4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104K07.bB6Ng01-104K07.g
ACCDH912880DH912881
length1,182657
definitionDH912880|Mus musculus domesticus DNA, BAC clone: B6Ng01-104K07, 5' end.DH912881|Mus musculus domesticus DNA, BAC clone: B6Ng01-104K07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,680,125 - 34,681,313)(34,532,282 - 34,533,398)
sequence
gaattcccagcttattcaaacttttcaatttaatcttctcagttaaccaa
atagtattttgctattaacaagaagtgactaggggctggagagatggctc
agtggttaagaatactgactgttttcccaaagatcctaagttgagtttta
aactggtgtcctcttctagtgtgtgtgaagatagctacagtgtgctcaaa
taaataatattgataaataatcttttttaaaaaaggaaatgactaaagaa
ttaacaaaatacagttatcatatagaaagataatagaaatggattagctt
aaaaacctaactctcaggcaggaggtggtagcttatatctagaatcttag
cacttgggtgcaagaggcaggaaaattaagagtccaaaggcatcctatgc
tgtctagtgagcttgcagccagcctggggtatacaagactctatctcaaa
aacatacagtggctagagagatgattcaacagtcatgagtgcttgatgct
cttccagagtactcgcgttcgtatcccagccccgacatcaggtaggcata
accacctctaagtctagctccagaggatctgaggccctcttctagcctct
ccgggtgcatgcatgtacattgcacatatatagatgcacacatagactta
aatgaaaatagatctttaaaaaaacataaaacaaccccaaataaaaaata
agcacaaaaaaacaaaatgtaaataaataaaataaataaacacacaaaaa
agaaaaacaagttctcagcaatgtgagcattaataaaaatgtccagtgtg
atggattaaaatatatcaaatatgtttaaatagcagcattcaaagtaaac
taccattgttctgcattcccaatgacatactaaatgcagacaatgagcag
cagtgtttattagtttcctcgtgacagtagtatacagcccctcttagaaa
ggacccggcaatctgccaatgttgagatccttctcttctcaggaaagatg
aatgacagaaaaacatgctaattctctctgtataacaactacaatttagg
gacattatttgcattttgatttgaagaaactgataggaaaaaactgcagt
gtaatgatgatgctaattctaagccaatcaagggttttttttttttttag
agaatactctcagccaggcgtgtgtggggcac
gaattcaaggtcagccttggttacaggacaccctatcttttttttttcag
cactcactttctgtgaaagcacaattagtagtgttcctgaaaggacaccc
tatcttaaatcgtaataaaagcatacctaagaacatgaggtaccacagag
atggctcagcagataaaggaacagcttcttgaaccctgagttcaattctg
ggatctacatagtagaaggcgagaaccaagtcttacatttggtcttctga
tcaccacaagcacaccatggaatatacacactacacattacacacacaca
cacacacacacacacacacacacacacacgcacacaccccttttaaagaa
ggatataaataaggaagtcagctggatgggtgaacaagtcgaggcactaa
taaccttaattaattctatgaggtcatatgagagaactgactcctgagag
ttgtcctctaatctccacatgtgtgccatggcacaagtgcaccttcacac
acatgcatgcaggcatgcactaataaatacaatttgggagaataaaaagg
aagtaagggaggaaagaaaggatgaaggcgggaaggagtccgcgttgtgg
atatagtttcagtgtcagcatgcacgaggccctgggtttgatttttcagt
acagcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_34680125_34681313
seq2: B6Ng01-104K07.b_43_1224 (reverse)

seq1  GTGCCCCAC-CACGCCTGGCTGAGGGTATTCTTTAAAAAAAAAAAAAAAG  49
      ||||||||| |||||||||||||| ||||||| ||||||||||||||   
seq2  GTGCCCCACACACGCCTGGCTGAGAGTATTCTCTAAAAAAAAAAAAA---  47

seq1  ACCTTTGATTGTGCATAAGAATTTAGCAATCATCAATACACTGCAGTTTT  99
      ||| ||||||| || | |||| ||||| ||||||| |||||||||| |||
seq2  ACCCTTGATTG-GC-TTAGAA-TTAGC-ATCATCATTACACTGCAG-TTT  92

seq1  TTTCCTA-CAGTTTCTTCAAATCAAAATGCAAATAATGTCCCTAAATTGT  148
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATCAGTTTCTTCAAATCAAAATGCAAATAATGTCCCTAAATTGT  142

seq1  AGTTGTTATACAGAGAGAATTAGCATGTTTTTCTGTCATTCCTCTTTCCT  198
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGTTGTTATACAGAGAGAATTAGCATGTTTTTCTGTCATTCATCTTTCCT  192

seq1  GGAGAGAGAGGGATCTCAACATTGGCAGATTGGCCGGGTCCTTTCTAGGA  248
      |   ||||| ||||||||||||||||||||| ||||||||||||||| ||
seq2  GAGAAGAGAAGGATCTCAACATTGGCAGATT-GCCGGGTCCTTTCTAAGA  241

seq1  GGGGCTGTATACTACTGTCACGAGGAAACTAATAAACACTGCTGCTCATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGTATACTACTGTCACGAGGAAACTAATAAACACTGCTGCTCATT  291

seq1  GTCTGCATTTAGTATGTCATTGGGAATGCAGAACAATGGTAGTTTACTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCATTTAGTATGTCATTGGGAATGCAGAACAATGGTAGTTTACTTT  341

seq1  GAATGCTGCTATTTAAACATATTTGATATATTTTAATCCATCACACTGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTGCTATTTAAACATATTTGATATATTTTAATCCATCACACTGGA  391

seq1  CATTTTTATTAATGCTCACATTGCTGAGAACTTGTTTTTCTTTTTTGTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTATTAATGCTCACATTGCTGAGAACTTGTTTTTCTTTTTTGTGT  441

seq1  GTTTATTTATTTTATTTATTTACATTTTGTTTTTTTGTGCTTATTTTTTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTATTTTATTTATTTACATTTTGTTTTTTTGTGCTTATTTTTTA  491

seq1  TTTGGGGTTGTTTTATGTTTTTTTAAAGATCTATTTTCATTTAAGTCTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGTTGTTTTATGTTTTTTTAAAGATCTATTTTCATTTAAGTCTAT  541

seq1  GTGTGCATCTATATATGTGCAATGTACATGCATGCACCCGGAGAGGCTAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCATCTATATATGTGCAATGTACATGCATGCACCCGGAGAGGCTAG  591

seq1  AAGAGGGCCTCAGATCCTCTGGAGCTAGACTTAGAGGTGGTTATGCCTAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGCCTCAGATCCTCTGGAGCTAGACTTAGAGGTGGTTATGCCTAC  641

seq1  CTGATGTCGGGGCTGGGATACGAACGCGAGTACTCTGGAAGAGCATCAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTCGGGGCTGGGATACGAACGCGAGTACTCTGGAAGAGCATCAAG  691

seq1  CACTCATGACTGTTGAATCATCTCTCTAGCCACTGTATGTTTTTGAGATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATGACTGTTGAATCATCTCTCTAGCCACTGTATGTTTTTGAGATA  741

seq1  GAGTCTTGTATACCCCAGGCTGGCTGCAAGCTCACTAGACAGCATAGGAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTGTATACCCCAGGCTGGCTGCAAGCTCACTAGACAGCATAGGAT  791

seq1  GCCTTTGGACTCTTAATTTTCCTGCCTCTTGCACCCAAGTGCTAAGATTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGGACTCTTAATTTTCCTGCCTCTTGCACCCAAGTGCTAAGATTC  841

seq1  TAGATATAAGCTACCACCTCCTGCCTGAGAGTTAGGTTTTTAAGCTAATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATAAGCTACCACCTCCTGCCTGAGAGTTAGGTTTTTAAGCTAATC  891

seq1  CATTTCTATTATCTTTCTATATGATAACTGTATTTTGTTAATTCTTTAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTATTATCTTTCTATATGATAACTGTATTTTGTTAATTCTTTAGT  941

seq1  CATTTCCTTTTTTAAAAAAGATTATTTATCAATATTATTTATTTGAGCAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTTTTTTAAAAAAGATTATTTATCAATATTATTTATTTGAGCAC  991

seq1  ACTGTAGCTATCTTCACACACACTAGAAGAGGACACCAGTTTAAAACTCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGCTATCTTCACACACACTAGAAGAGGACACCAGTTTAAAACTCA  1041

seq1  ACTTAGGATCTTTGGGAAAACAGTCAGTATTCTTAACCACTGAGCCATCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGATCTTTGGGAAAACAGTCAGTATTCTTAACCACTGAGCCATCT  1091

seq1  CTCCAGCCCCTAGTCACTTCTTGTTAATAGCAAAATACTATTTGGTTAAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCCCTAGTCACTTCTTGTTAATAGCAAAATACTATTTGGTTAAC  1141

seq1  TGAGAAGATTGAATTGAAAAGTTTGAATAAGCTGGGAATTC  1189
      |||||||||| ||||||||||||||||||||||||||||||
seq2  TGAGAAGATTAAATTGAAAAGTTTGAATAAGCTGGGAATTC  1182

seq1: chrX_34532282_34533398
seq2: B6Ng01-104K07.g_69_1173

seq1  GAATTCAAGGTCAGCCTTGGTTACAGGACACCCTATCTTTTTTTTTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTCAGCCTTGGTTACAGGACACCCTATCTTTTTTTTTTCAG  50

seq1  CACTCACTTTCTGTGAAAGCACAATTAGTAGTGTTCCTGAAAGGACACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACTTTCTGTGAAAGCACAATTAGTAGTGTTCCTGAAAGGACACCC  100

seq1  TATCTTAAATCGTAATAAAAGCATACCTAAGAACATGAGGTACCACAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAAATCGTAATAAAAGCATACCTAAGAACATGAGGTACCACAGAG  150

seq1  ATGGCTCAGCAGATAAAGGAACAGCTTCTTGAACCCTGAGTTCAATTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAGCAGATAAAGGAACAGCTTCTTGAACCCTGAGTTCAATTCTG  200

seq1  GGATCTACATAGTAGAAGGCGAGAACCAAGTCTTACATTTGGTCTTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTACATAGTAGAAGGCGAGAACCAAGTCTTACATTTGGTCTTCTGA  250

seq1  TCACCACAAGCACACCATGGAATATACACACTACACATTACACACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACAAGCACACCATGGAATATACACACTACACATTACACACACACA  300

seq1  CACACACACACACACACACACACACACACGCACACACCCCTTTTAAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACGCACACACCCCTTTTAAAGAA  350

seq1  GGATATAAATAAGGAAGTCAGCTGGATGGGTGAACAAGTCGAGGCACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATAAATAAGGAAGTCAGCTGGATGGGTGAACAAGTCGAGGCACTAA  400

seq1  TAACCTTAATTAATTCTATGAGGTCATATGAGAGAACTGACTCCTGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTAATTAATTCTATGAGGTCATATGAGAGAACTGACTCCTGAGAG  450

seq1  TTGTCCTCTAATCTCCACATGTGTGCCATGGCACAAGTGCACCTTCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTCTAATCTCCACATGTGTGCCATGGCACAAGTGCACCTTCACAC  500

seq1  ACATGCATGCAGGCATGCACTAATAAATACAATTTGGGAGAATAAAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATGCAGGCATGCACTAATAAATACAATTTGGGAGAATAAAAAGG  550

seq1  AAGTAAGGGAGGAAAGAAAGGATGAAGGCGGGAAGGAGTCCGCGTTGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGGGAGGAAAGAAAGGATGAAGGCGGGAAGGAGTCCGCGTTGTGG  600

seq1  ATATAG-TTCAGTGTCAGCATGCACGAGGCCCTGGGTTTGATTTTTCAGT  649
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTTCAGTGTCAGCATGCACGAGGCCCTGGGTTTGATTTTTCAGT  650

seq1  ACAGCAAAGAAAAATAAACAAATAAAAAAGAGAGGAAGAGAAGGTTTAAG  699
      |||||||                 ||||||||||||||||||||||||||
seq2  ACAGCAANNNNNNNNNNNNNNNNNAAAAAGAGAGGAAGAGAAGGTTTAAG  700

seq1  AAATTCCAGATCTTAAACAGAAGGGGTGGGACCAGGAGCCAAATAGCTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCAGATCTTAAACAGAAGGGGTGGGACCAGGAGCCAAATAGCTTT  750

seq1  AGAGACAGCAAGATAAGATGGGACCATGTCTGGAAGAGCTGTGTTAATGG  799
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGAGACAGCAAGATAAGATGGGACCATGTCTGGAAGAGCTGTGTT-ATGG  799

seq1  TAGCAAATTGCTTGGGCTTTTTGCTCCAGAATGGAGGTGCTCAGGCTGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAATTGCTTGGGCTTTTTGCTCCAGAATGGAGGTGCTCAGGCTGTG  849

seq1  CTGTCTAAGGAGAACGCCCATCCAGTGTCTCAATGTGTGTCTGCCACAAA  899
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  CTGTCT-AGGAGAACGCCCATCCAGTGTCTCAATGTGTGTCTGCCAC-AA  897

seq1  TGAGATGCTCCTAGAGAAATGAAAAAAGAAGGTGAATGGGTAGAATTTTC  949
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  TGAGATGCTCCTAGAGAAATGAAAAAAGA--GTGAATGGGTAGAATTTTC  945

seq1  TC-TATTTTAATTTTTTTAAATGTAAATCTTCCCTAAATATTTGAGAG-A  997
      || |||||||  |||||||||||| ||||||||||||||||||||||| |
seq2  TCTTATTTTA--TTTTTTAAATGT-AATCTTCCCTAAATATTTGAGAGAA  992

seq1  CGCTCCCACTTACCAGCTAGCAAGCACAAGATGAACGAATGAGTAGTAAC  1047
      |||||||||||||||||  |  |||| |||||||||| ||| ||||||  
seq2  CGCTCCCACTTACCAGCCTGGCAGCA-AAGATGAACG-ATG-GTAGTACT  1039

seq1  TG-AATAATAGACAGGCCATCCCAGTGCTGAACATGCTTAATTCAACAGT  1096
      || |||||||||| |||| |||  | ||||  | ||||| ||||||||||
seq2  TGAAATAATAGAC-GGCCCTCCAGGCGCTG--CCTGCTT-ATTCAACAGT  1085

seq1  TTAGTTTTTTCATGGACATCT  1117
      ||||||||||||| |||||||
seq2  TTAGTTTTTTCAT-GACATCT  1105