BAC Information

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BAC

Clone NameB6Ng01-104M05
ChromosomeX (Build37)
Map Location 12,613,909 - 12,786,647
singlet/doubletdoublet
Overlap geneUsp9x, LOC100043000
Upstream geneBcor, 2900008C10Rik, LOC385323, LOC100043946, LOC628441, Atp6ap2, LOC668986, EG245347, 1810030O07Rik, Crsp2, LOC668987, LOC245350, Ppia-psx_132.1
Downstream geneLOC100043002, LOC675380, Ddx3x, LOC385326, LOC634019, LOC668990, LOC100043947, LOC100043948, Nyx, LOC675416, Cask, Gpr34, Gpr82, LOC385327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104M05.bB6Ng01-104M05.g
ACCDH912966DH912967
length1,217866
definitionDH912966|Mus musculus domesticus DNA, BAC clone: B6Ng01-104M05, 5' end.DH912967|Mus musculus domesticus DNA, BAC clone: B6Ng01-104M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,613,909 - 12,615,190)(12,786,066 - 12,786,647)
sequence
gaattcagtccctgaagcccatgtgacggtggaaggagggagctgactcc
acacagttatcttccacacatgctccaaggcatgtgtgcgctccccacac
atcatatatacacaataataaacaatagaatatggacaaataatacaaag
atcaataaacctaatgctggctctttgaaactattcataaaatggataac
cctctaggtagactgatcaaggagaaaagtaaagaagagaaacacaattg
ctattgagaataaaggaggacatatcatatagatgatggagattatacat
gtgtgtgtgtgctttgttatgtgtgtgtatcaatgcgtgagaaaaagtaa
ttgtaactatatccataagaaaaggctggaaaattgtggatctgatctta
aattgaacagacagacatacctgcccttacgcaacaagcaaccttatgat
ttttaagatttttctgattcagatcactagctctttgagaaggcatttgt
cacaaaattccagcacataatatcaaaactatgcaaagctctagtgggtt
gctaccatgagtcatcacaacacagtctggaaagagctggcaaagactgc
cttgtatttttatatgaaaggatatgtttatttcagaaacgcgggactgc
taaacaatttgaaaataaaggatattcactacattcacaatacagaatgg
ccttaaaagatgacttttcataaaattcatttaaaggatatgatacaccc
attcatgattagaaaaatcatttgaaagctccaattgagagatgggcttc
ccttagatgacacaagaatggtagagaaacatcaaaagctttgaaacaaa
tcagagaagctcatgagcactggaatgtagttcctagccagctgatgagg
caagaaatatgattagccatactccaggagtatgggaactgaggacatct
gtgtggaactcatgtatgttaaaagttgacaaggagtgggaacatggact
ggaaacgttttattgcaaatatcatttccatgatctgctatgttcgtcat
ttctattttgtcttaaatgagggggctgcatagtctttgtattgttagca
tgttgagacgttctaccttatatacctgctgtcgaaatctataggatagc
tgaccctaattgtaggatctcgcctgcatggattgatcagtgagcatatc
acacccgaaattttttt
gaattccaccttataggaggcaacccatgtatacacatgaattaaaaaaa
aaaaaaaagagcttgcaggtttgcagtggactatggtggcccccaccttt
aatactagcaccccggtggcagagacagacagctctctgagttcgaggcc
agcctggtctacagagtgagttcaaagacagtcaggactgttacagaaaa
aaactcttgtgtgagtggaggcgggggtagggcagggggtaagcttgctt
taattaatttgaccatgatgatttgggctggtgctctctattcaaatcct
tgatgtcaacaccattcccacagccctcttttctttgaatcttttgagat
gaggtctcactgtggctgggtgatttgcctccatgtctgtgtgccacctg
catgcagatcttgaggaggtcagaagagggcagtggatcccctggaactg
gagttacagataattgggagcccaccatatggggaccaggaattgaaccc
atgtcctttggaggagccattagtactgtaaagcactgaggcatctctct
cagtctcataactaatagctgggataacttttcacagaccctcttttggc
tctgaatacttgaaacactgtttctcttccaccacctactttccaactgc
tgtggctcagggtggcgttaccaggtgggcaggcagattattcctggaaa
gcattcctgtcctaagatggccagtatttctatatatggaaatataatgg
tccattaaagtcattccaactgtatcgcaactcgagttctcaggatccag
aagttcttagcctgtggaatgggacaaagggagagtcatagtgggggaga
tagcagagttctgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_12613909_12615190
seq2: B6Ng01-104M05.b_41_1257

seq1  GAATTCAGTCCCTGAAGCCCATGTGACGGTGGAAGGAGGGAGCTGACTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCCTGAAGCCCATGTGACGGTGGAAGGAGGGAGCTGACTCC  50

seq1  ACACAGTTATCTTCCACACATGCTCCAAGGCATGTGTGCGCTCCCCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTTATCTTCCACACATGCTCCAAGGCATGTGTGCGCTCCCCACAC  100

seq1  ATCATATATACACAATAATAAACAATAGAATATGGACAAATAATACAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATATACACAATAATAAACAATAGAATATGGACAAATAATACAAAG  150

seq1  ATCAATAAACCTAATGCTGGCTCTTTGAAACTATTCATAAAATGGATAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAAACCTAATGCTGGCTCTTTGAAACTATTCATAAAATGGATAAC  200

seq1  CCTCTAGGTAGACTGATCAAGGAGAAAAGTAAAGAAGAGAAACACAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGGTAGACTGATCAAGGAGAAAAGTAAAGAAGAGAAACACAATTG  250

seq1  CTATTGAGAATAAAGGAGGACATATCATATAGATGATGGAGATTATACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAGAATAAAGGAGGACATATCATATAGATGATGGAGATTATACAT  300

seq1  GTGTGTGTGTGCTTTGTTATGTGTGTGTATCAATGCGTGAGAAAAAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGCTTTGTTATGTGTGTGTATCAATGCGTGAGAAAAAGTAA  350

seq1  TTGTAACTATATCCATAAGAAAAGGCTGGAAAATTGTGGATCTGATCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACTATATCCATAAGAAAAGGCTGGAAAATTGTGGATCTGATCTTA  400

seq1  AATTGAACAGACAGACATACCTGCCCTTACGCAACAAGCAACCTTATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACAGACAGACATACCTGCCCTTACGCAACAAGCAACCTTATGAT  450

seq1  TTTTAAGATTTTTCTGATTCAGATCACTAGCTCTTTGAGAAGGCATTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGATTTTTCTGATTCAGATCACTAGCTCTTTGAGAAGGCATTTGT  500

seq1  CACAAAATTCCAGCACATAATATCAAAACTATGCAAAGCTCTAGTGGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATTCCAGCACATAATATCAAAACTATGCAAAGCTCTAGTGGGTT  550

seq1  GCTACCATGAGTCATCACAACACAGTCTGGAAAGAGCTGGCAAAGACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCATGAGTCATCACAACACAGTCTGGAAAGAGCTGGCAAAGACTGC  600

seq1  CTTGTATTTTTATATGAAAGGATATGTTTATTTCAGAAACGCGGGACTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATTTTTATATGAAAGGATATGTTTATTTCAGAAACGCGGGACTGC  650

seq1  TAAACAATTTGAAAATAAAGGATATTCACTACATTCACAATACAGAATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATTTGAAAATAAAGGATATTCACTACATTCACAATACAGAATGG  700

seq1  CCTTAAAAGATGAC-TTTCATAAAATTCATTTAAAGGATATGATACACCC  749
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTTAAAAGATGACTTTTCATAAAATTCATTTAAAGGATATGATACACCC  750

seq1  ATTCATGATTAGAAAAATCATTTGAAAGCTCCAATTGAGAGATGGGCTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGATTAGAAAAATCATTTGAAAGCTCCAATTGAGAGATGGGCTTC  800

seq1  CCTTAGATGACACAAGAATGGTAGAGAAAACATCAAAAGCTTTGAAAACA  849
      |||||||||||||||||||||||||| ||||||||||||||||||||   
seq2  CCTTAGATGACACAAGAATGGTAGAG-AAACATCAAAAGCTTTGAAA--C  847

seq1  AAATCAGAGAAGCTCATGAGCACTGGAATGTAGTTCCTAGCCAGCTGATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGAGAAGCTCATGAGCACTGGAATGTAGTTCCTAGCCAGCTGATG  897

seq1  AGGCAAGAAAATATGATTAGCCATACTCCAGGAGTATGGGGAACTGAGGA  949
      ||||||| ||||||||||||||||||||||||||||| ||||||||||| 
seq2  AGGCAAG-AAATATGATTAGCCATACTCCAGGAGTAT-GGGAACTGAGG-  944

seq1  ACATCTGTGTGGAAACTCATGTATGTTAAAAAGTTGACAAGGAGTGGGGA  999
      |||||||||||| |||||||||||||| ||||||||||||||||||||  
seq2  ACATCTGTGTGG-AACTCATGTATGTT-AAAAGTTGACAAGGAGTGGG--  990

seq1  AACATGGACTGGAAAACTTTATATTGCAAAAATATCAATTTCCCATGAAT  1049
      |||||||||||| |||| || ||||||  ||||||||  || ||||| ||
seq2  AACATGGACTGG-AAACGTTTTATTGC--AAATATCA--TTTCCATG-AT  1034

seq1  CTGCTATGTTTGGTCATTTCTATATTATGTCTTTAAAATGAGGTGGCTGC  1099
      |||||||| || ||||||||  |||| ||||||  |||||||| ||||||
seq2  CTGCTATG-TTCGTCATTTC--TATTTTGTCTT--AAATGAGGGGGCTGC  1079

seq1  ATTAGTCTTTTGTATTGGTTTAGTCTTGTTTTGAGACTGTCTCTACCTCT  1149
      | ||||| |||||||||  |||| | ||  ||||||| || ||||||   
seq2  A-TAGTC-TTTGTATTG--TTAG-CATG--TTGAGAC-GT-TCTACC---  1117

seq1  TTATATAACCATTGCTGGTCTGAAACTCCCTATATAGATCAGGCTGGCCT  1199
      ||||||| |   |||| ||| ||||     | |||||   | |||| || 
seq2  TTATATACC---TGCT-GTC-GAAA-----TCTATAGGATA-GCTGACC-  1155

seq1  CTAATTTGTAGTGATC-CTCCTGCCTCTGCCTATTGAGTTTTGGGTTACA  1248
      |||| |||||| |||| | |||||        || ||   |||      |
seq2  CTAA-TTGTAG-GATCTCGCCTGC--------ATGGA---TTG------A  1186

seq1  GATGTGAGGCATTACACACACACGAAATTTTTTT  1282
         |||| ||||    ||||| ||||||||||||
seq2  TCAGTGA-GCAT--ATCACACCCGAAATTTTTTT  1217

seq1: chrX_12786066_12786647
seq2: B6Ng01-104M05.g_67_648 (reverse)

seq1  AAAAGTTATCCCAGCTATTAGTTATGAGACTGAGAGAGATGCCTCAGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTATCCCAGCTATTAGTTATGAGACTGAGAGAGATGCCTCAGTGC  50

seq1  TTTACAGTACTAATGGCTCCTCCAAAGGACATGGGTTCAATTCCTGGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGTACTAATGGCTCCTCCAAAGGACATGGGTTCAATTCCTGGTCC  100

seq1  CCATATGGTGGGCTCCCAATTATCTGTAACTCCAGTTCCAGGGGATCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGGTGGGCTCCCAATTATCTGTAACTCCAGTTCCAGGGGATCCAC  150

seq1  TGCCCTCTTCTGACCTCCTCAAGATCTGCATGCAGGTGGCACACAGACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCTTCTGACCTCCTCAAGATCTGCATGCAGGTGGCACACAGACAT  200

seq1  GGAGGCAAATCACCCAGCCACAGTGAGACCTCATCTCAAAAGATTCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAAATCACCCAGCCACAGTGAGACCTCATCTCAAAAGATTCAAAG  250

seq1  AAAAGAGGGCTGTGGGAATGGTGTTGACATCAAGGATTTGAATAGAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGGCTGTGGGAATGGTGTTGACATCAAGGATTTGAATAGAGAGC  300

seq1  ACCAGCCCAAATCATCATGGTCAAATTAATTAAAGCAAGCTTACCCCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCCAAATCATCATGGTCAAATTAATTAAAGCAAGCTTACCCCCTG  350

seq1  CCCTACCCCCGCCTCCACTCACACAAGAGTTTTTCTCTGTAACAGTCCTG  400
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCCTACCCCCGCCTCCACTCACACAAGAGTTTTTTTCTGTAACAGTCCTG  400

seq1  ACTGTCTTTGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTTTGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAGAG  450

seq1  CTGTCTGTCTCTGCCACCGGGGTGCTAGTATTAAAGGTGGGGGCCACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTCTCTGCCACCGGGGTGCTAGTATTAAAGGTGGGGGCCACCAT  500

seq1  AGTCCACTGCAAACCTGCAAGCTCTTTTTTTTTTTTTTTAATTCATGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACTGCAAACCTGCAAGCTCTTTTTTTTTTTTTTTAATTCATGTGT  550

seq1  ATACATGGGTTGCCTCCTCTAAGGTGGAATTC  582
      |||||||||||||||||| |||||||||||||
seq2  ATACATGGGTTGCCTCCTATAAGGTGGAATTC  582