BAC Information

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BAC

Clone NameB6Ng01-105J11
ChromosomeX (Build37)
Map Location 18,693,894 - 18,876,313
singlet/doubletdoublet
Overlap genenone
Upstream geneDusp21, LOC100043951, Utx, LOC100043952, 4930578C19Rik, LOC100043098, EG628855, LOC385333, EG628871
Downstream geneLOC100043953, BC049702, LOC675558, LOC668995, LOC385336, Chst7, Slc9a7, LOC668277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105J11.bB6Ng01-105J11.g
ACCDH913571DH913572
length1,048812
definitionDH913571|Mus musculus domesticus DNA, BAC clone: B6Ng01-105J11, 5' end.DH913572|Mus musculus domesticus DNA, BAC clone: B6Ng01-105J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,875,271 - 18,876,313)(18,693,894 - 18,694,704)
sequence
gaattcattgtcctattataagaaaggtactgtttttcctctggggcaaa
ggtcaattatgaacagtgacttactgagcatttaaaagtttaagttccct
aagctcagtttgcctctcctataatgcagtcccttttctgtgctgtgagc
atttaagccttgagagacagtacaaatgctgatattctggctactgagga
cacaatgaggaatgaacttaacatttaactatactaggctaatagtttag
cttataagtagagtaaattcatagacctttcacaatcattgaatctgctg
tcttggaagaacataatccatagccacatctgagatcagggttatccact
tgcctagcaaatgtaggctgagcattatatcagatatttagtagtagtga
tcttcggttggaggcatggattcattagatatgtgaagaaagagataagt
tgttcattaacctcacagttcatgtttctgaaagatttaagctaactaag
tcagaagggccaagatgggatcacctccacagctcagtcaattgtcttcc
ccacaagatgtatactgctttaaaacaagtcttttaaatgaacaaaatct
aaaatctggatcttttaaataaaatgtcctgattaataaatgttaagaac
tagctcatcttttaagtagcacacattacattaaagtaaataaaggccta
ctactatgggccactatgggtcatcagagtaaagtagaaaattattaagg
tcttgtgagccactttcacacagaacagtgcccaaaagaaaattaaggat
taaaatatggtcatcatggatgacaaagtagataaagaacatttggatgt
ttttaggcagcattattgccacgtgacaggaactattgcagtagaggaaa
acttcttgataggggtattatactcccttttaataattttttggaaagtc
ttttgtgccttcttctttttacctaattttctttaattataggctctact
tggtatttacatgacctaattttaatgctgttgatctctggtgttttc
gaattctacatctggatctgcaaacatcaggaaaataaatactctggtct
tgaaatggacattttgaaacctgaaagccgacctgcagtgatatacttcc
tccacatctccaaatcctttcaaatagtgtcactcttaggtgaacacaca
ttcaaatcatgaggctataggaatgatttttcaaactaccacatacatat
acaaatatatgaaacaataacaatgaaagaagaagctcattaacttgaaa
aagagaaaggagggctatagtggagggttttgagggaagaaagaaaggaa
gaaatgtaactatattataatctcaaaaaaatcttgacacaaaaacctaa
aaatatttttaaagtacacataagagacgaaaggagagaccatccagaga
ctgctccacctgcggatccatcccataatcagccaccaaactcagacact
attacatatgcctgcaagattttgctgaaaggaccctgatatagctgtct
cttgtgaggctgtcagtgcctggcaaacacagaagtggatgctcacagtc
agttattggatggaacacagggaccccaatggaggggctagagaaagtac
ccaaggagctgaaggagtctgcaaccctataggtggaacaacaatatgaa
ctaaccagtgcccccagagctcatgtctctagctgcatgtgtagtagaag
atggcctagttggccatcattgggaagagaggcctcttggtctggcaaac
tttatatgccccagtacaaaggaaacaccagggccaagaggtgggagtgg
gtgggtaagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_18875271_18876313
seq2: B6Ng01-105J11.b_42_1089 (reverse)

seq1  GAAAACACAAGGAATCAACAGCATTAAAATTTAGTTCATGTAAATA-CAA  49
      |||||||| ||  |||||||||||||||| |||| ||||||||||| |||
seq2  GAAAACACCAGAGATCAACAGCATTAAAA-TTAGGTCATGTAAATACCAA  49

seq1  GTAGAGCCTATAATTAAAGAAAATTAGTAAAAAAGAAGAAGGCACAAAAG  99
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  GTAGAGCCTATAATTAAAGAAAATTAGGTAAAAAGAAGAAGGCACAAAAG  99

seq1  ACTTTTCAAAAAA-TATTAAAA-GGAGTATAAATACCCCTATCAAG-AGT  146
      ||||| ||||||| |||||||| ||||||| ||||||||||||||| |||
seq2  ACTTTCCAAAAAATTATTAAAAGGGAGTAT-AATACCCCTATCAAGAAGT  148

seq1  TTTCCTCTACTGCAATAGTTCCTGTCACGTGGCAATAATGCTGCCTAATA  196
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTCCTCTACTGCAATAGTTCCTGTCACGTGGCAATAATGCTGCCTAAAA  198

seq1  ACATCC-AATGTTCTTTATCTACTTTGTCATCCATGATGACCATATTTTA  245
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCAAATGTTCTTTATCTACTTTGTCATCCATGATGACCATATTTTA  248

seq1  ATCCTTAATTTTCTTTT-GGCACTGTTCTGTGTGAAAGTGGCTCACAAGA  294
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATCCTTAATTTTCTTTTGGGCACTGTTCTGTGTGAAAGTGGCTCACAAGA  298

seq1  CCTTAATAATTTTCTAC-TTACTCTGATGACCCATAGTGGCCCATAGTAG  343
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCTTAATAATTTTCTACTTTACTCTGATGACCCATAGTGGCCCATAGTAG  348

seq1  TAGGCCTTTATTTACTTTAATGTAATGTGTGCTACTTAAAAGATGAGCTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTTTATTTACTTTAATGTAATGTGTGCTACTTAAAAGATGAGCTA  398

seq1  GTTCTTAACATTTATTAATCAGGACATTTTATTTAAAAGATCCAGATTTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTAACATTTATTAATCAGGACATTTTATTTAAAAGATCCAGATTTT  448

seq1  AGATTTTGTTCATTTAAAAGACTTGTTTTAAAGCAGTATACATCTTGTGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGTTCATTTAAAAGACTTGTTTTAAAGCAGTATACATCTTGTGG  498

seq1  GGAAGACAATTGACTGAGCTGTGGAGGTGATCCCATCTTGGCCCTTCTGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACAATTGACTGAGCTGTGGAGGTGATCCCATCTTGGCCCTTCTGA  548

seq1  CTTAGTTAGCTTAAATCTTTCAGAAACATGAACTGTGAGGTTAATGAACA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTAGCTTAAATCTTTCAGAAACATGAACTGTGAGGTTAATGAACA  598

seq1  ACTTATCTCTTTCTTCACATATCTAATGAATCCATGCCTCCAACCGAAGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATCTCTTTCTTCACATATCTAATGAATCCATGCCTCCAACCGAAGA  648

seq1  TCACTACTACTAAATATCTGATATAATGCTCAGCCTACATTTGCTAGGCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTACTACTAAATATCTGATATAATGCTCAGCCTACATTTGCTAGGCA  698

seq1  AGTGGATAACCCTGATCTCAGATGTGGCTATGGATTATGTTCTTCCAAGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATAACCCTGATCTCAGATGTGGCTATGGATTATGTTCTTCCAAGA  748

seq1  CAGCAGATTCAATGATTGTGAAAGGTCTATGAATTTACTCTACTTATAAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGATTCAATGATTGTGAAAGGTCTATGAATTTACTCTACTTATAAG  798

seq1  CTAAACTATTAGCCTAGTATAGTTAAATGTTAAGTTCATTCCTCATTGTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTATTAGCCTAGTATAGTTAAATGTTAAGTTCATTCCTCATTGTG  848

seq1  TCCTCAGTAGCCAGAATATCAGCATTTGTACTGTCTCTCAAGGCTTAAAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGTAGCCAGAATATCAGCATTTGTACTGTCTCTCAAGGCTTAAAT  898

seq1  GCTCACAGCACAGAAAAGGGACTGCATTATAGGAGAGGCAAACTGAGCTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAGCACAGAAAAGGGACTGCATTATAGGAGAGGCAAACTGAGCTT  948

seq1  AGGGAACTTAAACTTTTAAATGCTCAGTAAGTCACTGTTCATAATTGACC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACTTAAACTTTTAAATGCTCAGTAAGTCACTGTTCATAATTGACC  998

seq1  TTTGCCCCAGAGGAAAAACAGTACCTTTCTTATAATAGGACAATGAATTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCCAGAGGAAAAACAGTACCTTTCTTATAATAGGACAATGAATTC  1048

seq1: chrX_18693894_18694704
seq2: B6Ng01-105J11.g_68_879

seq1  GAATTCTACATCTGGATCTGCAAACATCAGGAAAATAAATACTCTGGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATCTGGATCTGCAAACATCAGGAAAATAAATACTCTGGTCT  50

seq1  TGAAATGGACATTTTGAAACCTGAAAGCCGACCTGCAGTGATATACTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGGACATTTTGAAACCTGAAAGCCGACCTGCAGTGATATACTTCC  100

seq1  TCCACATCTCCAAATCCTTTCAAATAGTGTCACTCTTAGGTGAACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCTCCAAATCCTTTCAAATAGTGTCACTCTTAGGTGAACACACA  150

seq1  TTCAAATCATGAGGCTATAGGAATGATTTTTCAAACTACCACATACATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATCATGAGGCTATAGGAATGATTTTTCAAACTACCACATACATAT  200

seq1  ACAAATATATGAAACAATAACAATGAAAGAAGAAGCTCATTAACTTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATATGAAACAATAACAATGAAAGAAGAAGCTCATTAACTTGAAA  250

seq1  AAGAGAAAGGAGGGCTATAGTGGAGGGTTTTGAGGGAAGAAAGAAAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAGGAGGGCTATAGTGGAGGGTTTTGAGGGAAGAAAGAAAGGAA  300

seq1  GAAATGTAACTATATTATAATCTCAAAAAAATCTTGACACAAAAACCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTAACTATATTATAATCTCAAAAAAATCTTGACACAAAAACCTAA  350

seq1  AAATATTTTTAAAGTACACATAAGAGACGAAAGGAGAGACCATCCAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTTAAAGTACACATAAGAGACGAAAGGAGAGACCATCCAGAGA  400

seq1  CTGCTCCACCTGCGGATCCATCCCATAATCAGCCACCAAACTCAGACACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCACCTGCGGATCCATCCCATAATCAGCCACCAAACTCAGACACT  450

seq1  ATTACATATGCCTGCAAGATTTTGCTGAAAGGACCCTGATATAGCTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATATGCCTGCAAGATTTTGCTGAAAGGACCCTGATATAGCTGTCT  500

seq1  CTTGTGAGGCTGTCAGTGCCTGGCAAACACAGAAGTGGATGCTCACAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAGGCTGTCAGTGCCTGGCAAACACAGAAGTGGATGCTCACAGTC  550

seq1  AGTTATTGGATGGAACACAGGGACCCCAATGGAGGGGCTAGAGAAAGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTGGATGGAACACAGGGACCCCAATGGAGGGGCTAGAGAAAGTAC  600

seq1  CCAAGGAGCTGAAGGAGTCTGCAACCCTATAGGTGGAACAACAATATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAGCTGAAGGAGTCTGCAACCCTATAGGTGGAACAACAATATGAA  650

seq1  CTAACCAGTGCCCCCAGAGCTCATGTCTCTAGCTGCATGTGTAGTAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCAGTGCCCCCAGAGCTCATGTCTCTAGCTGCATGTGTAGTAGAAG  700

seq1  ATGGCCTAGTTGGCCATCATTGGGAAGAGAGGCCCCTTGGTCTGGCAAAC  750
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGGCCTAGTTGGCCATCATTGGGAAGAGAGGCCTCTTGGTCTGGCAAAC  750

seq1  TTTATATGCCCCAGTACAAAGG-AACACCAGGGCCAAGAGGTGGGAGTGG  799
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTATATGCCCCAGTACAAAGGAAACACCAGGGCCAAGAGGTGGGAGTGG  800

seq1  GTGGGTAGGAGA  811
      ||||||| ||||
seq2  GTGGGTAAGAGA  812