BAC Information

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BAC

Clone NameB6Ng01-106C05
ChromosomeX (Build37)
Map Location 72,665,708 - 72,772,073
singlet/doubletdoublet
Overlap geneBrcc3, LOC667496, Vbp1
Upstream geneG6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437, EG667446, LOC669291, Gab3, Dkc1, Mpp1, EG547412, 4930428E23Rik, EG667190, F8, LOC572559, LOC667218, Fundc2, Mtcp1
Downstream geneRab39b, EG635243, Pls3, LOC635275, EG635295, LOC667537, LOC385472, LOC100041147, EG238829, Magea7, 4930428D18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106C05.bB6Ng01-106C05.g
ACCDH913962DH913963
length1,1751,153
definitionDH913962|Mus musculus domesticus DNA, BAC clone: B6Ng01-106C05, 5' end.DH913963|Mus musculus domesticus DNA, BAC clone: B6Ng01-106C05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,665,708 - 72,666,895)(72,770,899 - 72,772,073)
sequence
gaattcctggtttgcatctattttattttagtattctaagatataatctt
tgggatttcatagttcctgttgaaaagtcagttatttgtcttgttattct
ttgagaggctatgtatgcatctatatctgtttctaattttctttttcatc
tgttttatgcctgccatacattgtagtagttactggtgagaaagcataaa
taaaaaatggtctctgttcctgagaagcttgcatcctaatagaggagaaa
agtgtgaaaataattatgacacagtgtgtgttctagtaaaaataggtgca
taatgattatgaaagaatacgtatgcaggagaaaatgattttatgcttat
tatatgatcaggaacttaatatgaaagtgctctcagaatatttgtgaaaa
tatttacacagaagggagaatgtgtgaaaagctactgaaccataaaatag
caacacatgatttatagaaactccaagtaagacaataatagaaaagcata
acaaccttctgagatttaaactctatagagctatctgtgttgtgttttca
acaaattataaagccaggtgtgattgtttacacttgagtctcagcgctaa
ggaggttggagcagaaggattattgtgaatttcaggctaacctaagctgc
aaagtgagttgcagaccatcctaggctatagacttgagaccttgtcaaac
aacaacaaaaagaaaggttattctttgagcaacatcttattaatttttaa
aagaatagtcagtattttttatgcaaattgtaccttgtcttgatttttgt
ctgttcaggatagtttatcctaccaaaatgctgactattctttcaactac
attcacactttctttagtaagtaactacagccaaaagatgaaagtaaagt
taatataaggttatatttcatttagatctaatatgaaaagcattattttc
aatatgtagtcagtagttagaaatgttgacatagttcacattcttccact
cctctttgtagtaagacttttaagattatttatttatttattattgtata
tgagtacactgtagcgatcttcaggacaccagagagcatcacatcccatt
acagatggtgtggcaaccatgtgttgtgagaattgaattgggaacctctg
gaatagccccagcactgatccatct
gaattcaactgtgtacatcaaaagatatactgaagctctaacctcccggt
acctaaaaccttatgcagaaataaaatatattatggattaagcagtgtct
ttttccaaaaaaaatccagtcttaaccctcagtacttcagactgcaaaaa
aaataatttaaaaattatttgagcatataatttctttacaaatgtaacca
cgtcaaaataagctgaatatagacagtctttccacagtgatacattcggg
tatattttctatactttagtaggccatgactgagagataatagaccagcc
ctaagttgggcttaactgctgctgttccactaaatggtcatgtcaaactg
ccttcttttttgtttataccagaatattttgctgctctcaatcttggttc
agagaagattctttttgcagtggggagtggttactacagagagtcataac
tggtctgttcagactaagtgactgtgaatgctcaaccttaaaaaaaaagt
tttctacatcaacttcccccaatccaaggctcagggagcatcacagatgt
gggcagaaggaatataaaagccagagaagaagtgtgaaatgctgtcttct
ggacatggcatggttgatgagcaaatcaactcacaatagccatgattgcc
tatatgaaattaatccagctaacattccagcatggataaaaggaggagct
tcagatgcccaaccccttagctgctgaacgaaagtccctccccagagatg
ctggcattggtaggttgcccatgcctcagcagatggcccctatagccatc
tatatatggtcagtactaattgaaatcagggagctactaatgatgacaaa
aaactcacataaagtctagaaggaaacaggtgaagtgcctgggagactga
aggacatagtgaggatgggtatgataaaaatacattgtatatacgtgtga
aattttcagagatgttaaaatgagaaataaaagcctaagtgataaacact
gatctttccttttaaaaagaactagactaacagaaactgaaatgactcac
taacaacactggagtactaactactaattcaaaattgagtttcactggtt
aatgatcattgttcatagcactagagcatgtctttacacagcagcaaagg
aaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_72665708_72666895
seq2: B6Ng01-106C05.b_47_1221

seq1  GAATTCCTGGTTTGCATCTATTTTATTTTAGTATTCTAAGATATAATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTTTGCATCTATTTTATTTTAGTATTCTAAGATATAATCTT  50

seq1  TGGGATTTCATAGTTCCTGTTGAAAAGTCAGTTATTTGTCTTGTTATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTCATAGTTCCTGTTGAAAAGTCAGTTATTTGTCTTGTTATTCT  100

seq1  TTGAGAGGCTATGTATGCATCTATATCTGTTTCTAATTTTCTTTTTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGGCTATGTATGCATCTATATCTGTTTCTAATTTTCTTTTTCATC  150

seq1  TGTTTTATGCCTGCCATACATTGTAGTAGTTACTGGTGAGAAAGCATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATGCCTGCCATACATTGTAGTAGTTACTGGTGAGAAAGCATAAA  200

seq1  TAAAAAATGGTCTCTGTTCCTGAGAAGCTTGCATCCTAATAGAGGAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATGGTCTCTGTTCCTGAGAAGCTTGCATCCTAATAGAGGAGAAA  250

seq1  AGTGTGAAAATAATTATGACACAGTGTGTGTTCTAGTAAAAATAGGTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAAAATAATTATGACACAGTGTGTGTTCTAGTAAAAATAGGTGCA  300

seq1  TAATGATTATGAAAGAATACGTATGCAGGAGAAAATGATTTTATGCTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATTATGAAAGAATACGTATGCAGGAGAAAATGATTTTATGCTTAT  350

seq1  TATATGATCAGGAACTTAATATGAAAGTGCTCTCAGAATATTTGTGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGATCAGGAACTTAATATGAAAGTGCTCTCAGAATATTTGTGAAAA  400

seq1  TATTTACACAGAAGGGAGAATGTGTGAAAAGCTACTGAACCATAAAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACACAGAAGGGAGAATGTGTGAAAAGCTACTGAACCATAAAATAG  450

seq1  CAACACATGATTTATAGAAACTCCAAGTAAGACAATAATAGAAAAGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACATGATTTATAGAAACTCCAAGTAAGACAATAATAGAAAAGCATA  500

seq1  ACAACCTTCTGAGATTTAAACTCTATAGAGCTATCTGTGTTGTGTTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTTCTGAGATTTAAACTCTATAGAGCTATCTGTGTTGTGTTTTCA  550

seq1  ACAAATTATAAAGCCAGGTGTGATTGTTTACACTTGAGTCTCAGCGCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTATAAAGCCAGGTGTGATTGTTTACACTTGAGTCTCAGCGCTAA  600

seq1  GGAGGTTGGAGCAGAAGGATTATTGTGAATTTCAGGCTAACCTAAGCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTGGAGCAGAAGGATTATTGTGAATTTCAGGCTAACCTAAGCTGC  650

seq1  AAAGTGAGTTGCAGACCATCCTAGGCTATAGACTTGAGACCTTGTCAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAGTTGCAGACCATCCTAGGCTATAGACTTGAGACCTTGTCAAAC  700

seq1  AACAACAAAAAGAAAGGTTATTCTTTGAGCAACATCTTATTAATTTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAAAAAGAAAGGTTATTCTTTGAGCAACATCTTATTAATTTTTAA  750

seq1  AAGAATAGTCAGTATTTTTTATGCAAATTGTACCTTGTCTTGATTTTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAGTCAGTATTTTTTATGCAAATTGTACCTTGTCTTGATTTTTGT  800

seq1  CTGTTCAGGATAGTTTATCCTACCAAAATGCTGACTATTCTTTCAACTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAGGATAGTTTATCCTACCAAAATGCTGACTATTCTTTCAACTAC  850

seq1  ATTCACACTTTCTTTAGTAAGTAACTACAGCCAAAAGATGAAAGTAAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACACTTTCTTTAGTAAGTAACTACAGCCAAAAGATGAAAGTAAAGT  900

seq1  TAATATAAGGTTATATTTCATTTAGATCTAATATGAAAAGCATTA-TTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAATATAAGGTTATATTTCATTTAGATCTAATATGAAAAGCATTATTTTC  950

seq1  AATATGTAGTCAGTAGTTAAGAAATGTTGACATAGTTCACATTCTTCCCA  999
      |||||||||||||||||| ||||||||||||||||||||||||||| |||
seq2  AATATGTAGTCAGTAGTT-AGAAATGTTGACATAGTTCACATTCTT-CCA  998

seq1  CTCCCTCTTTGTAGTAAGACTTTTAAAGATTTATTTATTTATTTATTTAT  1049
      || ||||||||||||||||||||| |||| ||||||||||||||| ||||
seq2  CT-CCTCTTTGTAGTAAGACTTTT-AAGA-TTATTTATTTATTTA-TTAT  1044

seq1  TGTATATGAGTACACTGTAGCGATCTTCAGGGACACCAGAAGAGGGCATC  1099
      ||||||||||||||||||||||||||||| |||||||   |||| |||||
seq2  TGTATATGAGTACACTGTAGCGATCTTCA-GGACACC---AGAGAGCATC  1090

seq1  ACATCCCATTACAGATGGTTGTGAGCAACCATGTGGTTGTTGAGAATTGA  1149
      |||||||||||||||||| |||| |||||||||| |||| ||||||||||
seq2  ACATCCCATTACAGATGG-TGTG-GCAACCATGT-GTTG-TGAGAATTGA  1136

seq1  ATTGGG-ACCTCTGGAATAGCACCCAGCACTGAGCCATCT  1188
      |||||| |||||||||||||| ||||||||||| ||||||
seq2  ATTGGGAACCTCTGGAATAGC-CCCAGCACTGATCCATCT  1175

seq1: chrX_72770899_72772073
seq2: B6Ng01-106C05.g_70_1222 (reverse)

seq1  TTTCCTTTGCTGCTGTTGTAAGACATGCTCTAGTGCTATGAACAATGGAT  50
      ||||||||||||||||   ||||||||||||||||||||||||||| |||
seq2  TTTCCTTTGCTGCTGTGTAAAGACATGCTCTAGTGCTATGAACAAT-GAT  49

seq1  CATTTAACACAGTGAAACTCAATTTTATGATATAGTTAGTTTATGTACT-  99
      || ||||| ||||||||||||||||  |||  ||| |||||   ||||| 
seq2  CA-TTAAC-CAGTGAAACTCAATTT--TGAATTAG-TAGTT--AGTACTC  92

seq1  CAGTGTTTGTTAGTTGAGTTCATTTCAGTTTCCTGTTTAGTCTTAGTTCT  149
      ||||| ||||||| |||| |||||||||||| ||| |||||| |||||| 
seq2  CAGTG-TTGTTAG-TGAG-TCATTTCAGTTT-CTG-TTAGTC-TAGTTC-  135

seq1  GTTTTTAAAAGGAAAGATTCAGTGTTTATCACTTAGGCTTTTATTTTCTC  199
       |||||||||||||||| ||||||||||||||||||||||||| ||||||
seq2  -TTTTTAAAAGGAAAGA-TCAGTGTTTATCACTTAGGCTTTTA-TTTCTC  182

seq1  ATTTTTAACATTCTCTGAAAATTTCACACGTATATACAATGTATTTTTAT  249
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  A-TTTTAACA-TCTCTGAAAATTTCACACGTATATACAATGTATTTTTAT  230

seq1  CATACCCATCCTCACTATGTTCCTTCAGTTCTCCCAGGCACTTCAACCTG  299
      ||||||||||||||||||| |||||||| ||||||||||||||| |||||
seq2  CATACCCATCCTCACTATG-TCCTTCAG-TCTCCCAGGCACTTC-ACCTG  277

seq1  TTTCCTTCTAGACTTTATGTGAGTTTTTTGTCATCATTAGTAGCTCCCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCTAGACTTTATGTGAGTTTTTTGTCATCATTAGTAGCTCCCTG  327

seq1  ATTTCAATTAGTACTGACCATATATAGATGGCTATAGGGGCCATCTGCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAATTAGTACTGACCATATATAGATGGCTATAGGGGCCATCTGCTG  377

seq1  AGGCATGGGCAACCTACCAATGCCAGCATCTCTGGGGAGGGACTTTCGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGGGCAACCTACCAATGCCAGCATCTCTGGGGAGGGACTTTCGTT  427

seq1  CAGCAGCTAAGGGGTTGGGCATCTGAAGCTCCTCCTTTTATCCATGCTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCTAAGGGGTTGGGCATCTGAAGCTCCTCCTTTTATCCATGCTGG  477

seq1  AATGTTAGCTGGATTAATTTCATATAGGCAATCATGGCTATTGTGAGTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAGCTGGATTAATTTCATATAGGCAATCATGGCTATTGTGAGTTG  527

seq1  ATTTGCTCATCAACCATGCCATGTCCAGAAGACAGCATTTCACACTTCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTCATCAACCATGCCATGTCCAGAAGACAGCATTTCACACTTCTT  577

seq1  CTCTGGCTTTTATATTCCTTCTGCCCACATCTGTGATGCTCCCTGAGCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCTTTTATATTCCTTCTGCCCACATCTGTGATGCTCCCTGAGCCT  627

seq1  TGGATTGGGGGAAGTTGATGTAGAAAACTTTTTTTTTAAGGTTGAGCATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGGGGGAAGTTGATGTAGAAAACTTTTTTTTTAAGGTTGAGCATT  677

seq1  CACAGTCACTTAGTCTGAACAGACCAGTTATGACTCTCTGTAGTAACCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCACTTAGTCTGAACAGACCAGTTATGACTCTCTGTAGTAACCAC  727

seq1  TCCCCACTGCAAAAAGAATCTTCTCTGAACCAAGATTGAGAGCAGCAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACTGCAAAAAGAATCTTCTCTGAACCAAGATTGAGAGCAGCAAAA  777

seq1  TATTCTGGTATAAACAAAAAAGAAGGCAGTTTGACATGACCATTTAGTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGGTATAAACAAAAAAGAAGGCAGTTTGACATGACCATTTAGTGG  827

seq1  AACAGCAGCAGTTAAGCCCAACTTAGGGCTGGTCTATTATCTCTCAGTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAGCAGTTAAGCCCAACTTAGGGCTGGTCTATTATCTCTCAGTCA  877

seq1  TGGCCTACTAAAGTATAGAAAATATACCCGAATGTATCACTGTGGAAAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTACTAAAGTATAGAAAATATACCCGAATGTATCACTGTGGAAAGA  927

seq1  CTGTCTATATTCAGCTTATTTTGACGTGGTTACATTTGTAAAGAAATTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTATATTCAGCTTATTTTGACGTGGTTACATTTGTAAAGAAATTAT  977

seq1  ATGCTCAAATAATTTTTAAATTATTTTTTTTGCAGTCTGAAGTACTGAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCAAATAATTTTTAAATTATTTTTTTTGCAGTCTGAAGTACTGAGG  1027

seq1  GTTAAGACTGGATTTTTTTTGGAAAAAGACACTGCTTAATCCATAATATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGACTGGATTTTTTTTGGAAAAAGACACTGCTTAATCCATAATATA  1077

seq1  TTTTATTTCTGCATAAGGTTTTAGGTACCGGGAGGTTAGAGCTTCAGTAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCTGCATAAGGTTTTAGGTACCGGGAGGTTAGAGCTTCAGTAT  1127

seq1  ATCTTTTGATGTACACAGTTGAATTC  1175
      ||||||||||||||||||||||||||
seq2  ATCTTTTGATGTACACAGTTGAATTC  1153