BAC Information

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BAC

Clone NameB6Ng01-108N04
ChromosomeX (Build37)
Map Location 161,542,697 - 161,692,812
singlet/doubletdoublet
Overlap geneGlra2
Upstream geneTmem27, Ace2, Bmx, Pir, Figf, Piga, Asb11, Asb9, Mospd2, Fancb, LOC627045
Downstream geneLOC100040753, Gemin8, Gpm6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108N04.bB6Ng01-108N04.g
ACCDH915905DH915906
length1,1151,236
definitionDH915905|Mus musculus domesticus DNA, BAC clone: B6Ng01-108N04, 5' end.DH915906|Mus musculus domesticus DNA, BAC clone: B6Ng01-108N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,542,697 - 161,543,820)(161,691,528 - 161,692,812)
sequence
gaattcttgtataacaagagcatagaatcaatgtatttttttctctctca
aatacgtttatttcgtagaaaacattgtgtcactgcctacaaataaaaca
aaagtggctcatcagtagaaaataactagaaccttgaaaaatagtgagtt
tgaaacatggtacctgcagggctacgttagttagggctgctcccagaaga
catgagttattaaaagaaaactcagtgccaggcatgaggtatctccttag
gagttattagtcagggcaggtccccaggtacctacaacaacacagcctat
catccttggttgcttgccataactaaacagtgggcctctagtgctggaga
cagcacacagcttagttacagaaggcagagaaatgtatattgaaatgagc
agaaaactatgcacctgctggataccttccatagttccactgtgtaggct
cttggaaaagccaccaatgatctgacctagcactggaccctgaatgctac
agtactgacatgccaggcaagatgtattgacagagaaatggtggcatgac
tgttacaggtaataaacttctttctgattgattctgaggctgttattata
aacctggtcaaaagtacttgacaaggaaggtcatttgacctggtaaggga
atatatcggtcttttgttacaacatgttgtcaaatgctttctaactcttc
tttctttctttctttctttctttctttctttctttctttctttctttctt
tctttctttctttctttctttctcctttctaccttgtcctcccagttcct
tcttacctcccctcccatcctgatccactctctttctgtctctcattagg
agaaaatatgcttctaaaggataaaatataatgatagaactaaaactaac
acatggaaattggtcaaaaaaaaacaaccaaccaaccaaccaaacaatca
aacaacaacagaggacctggcacagacacatgcaggccctgtgtttgtga
gagcaacctacagtcagcaacagcctgggttgttaggggtctcatgaacc
cttgggtcaacactcattaaatgagaaaaagagatttctgatttctgaaa
ttgtgtgatgtgggc
gaattcactctcagtaattaacaaaaggctcctacaagtaaagctaacac
tccagaagaagccaaatatgcaatggtaatacttgcaggccggcctataa
tgaattcattctcattaaacatttcaaaagaagtggctttatttgagata
ctaagacagcaccacaaattggattgtcttattgaactgccacagacaca
gctctttcaagtgaagaaaatcttcaaacggtttcggtgcttgtttactt
gtttgctcttcagagagggttagtgaataaagaggccagagataaaagat
tctatagattcctttctctcgttatccacacgaaaaaaattaatcagaaa
taccttgctgtgttcagtttctctgtgtcatcagacacgtagttatgatg
actacagcagctcttataaaaactgtacctgaaatgattccttcctctgc
ttgcccacctgtcattacattttgccttttctcagaaaagatacattgtt
tgttactacttctttcctccagttgggtacaccatgaatgacctgatatt
tgagtggttaagtgatggtccagtacaagttgctgaaggactcaccttgc
cccagtttattttgaaagaagagaaggagcttggttattgcacaaagcat
tacaacactggtaaggttttctttctttcatttgctaagcccaagagctc
tccatttgtatatgagattagctgccctattatcttaacagttgcacatt
tatgaagcaaattgaatttaagaaaactctcaacatgtagggttactgta
ccctatggaataggcttgtgagtgcagcagattgtctccctcaaacacag
aaaaattaggaatcttttactcttctcttaatgagagtctgctgtcgaat
gagtctaaggaaaagtgtagacctcattaattgtacagaaaacataaatc
cttggctactctttgcatctactcttcacattgcatcctaaggtcatttg
catctggcttatggaagaagtgataatgacacagtcggtggaaacccaga
aatagagaaatgctctgcagtctggaacaaacagtctcatggcacctctg
gagagaattcagctgctagtcaggtgctatcttagcactgaagacatatg
gatagcaaggtgaggtatgcacaatggcctgtgtgtctgaaatatctgac
gaacgatgtctttctcaaggttctcgtcttttgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_161542697_161543820
seq2: B6Ng01-108N04.b_45_1159

seq1  GAATTCTTGTATAACAAGAGCATAGAATCAATGTATTTTTTTCTCTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTATAACAAGAGCATAGAATCAATGTATTTTTTTCTCTCTCA  50

seq1  AATACGTTTATTTCGTAGAAAACATTGTGTCACTGCCTACAAATAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGTTTATTTCGTAGAAAACATTGTGTCACTGCCTACAAATAAAACA  100

seq1  AAAGTGGCTCATCAGTAGAAAATAACTAGAACCTTGAAAAATAGTGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGCTCATCAGTAGAAAATAACTAGAACCTTGAAAAATAGTGAGTT  150

seq1  TGAAACATGGTACCTGCAGGGCTACGTTAGTTAGGGCTGCTCCCAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATGGTACCTGCAGGGCTACGTTAGTTAGGGCTGCTCCCAGAAGA  200

seq1  CATGAGTTATTAAAAGAAAACTCAGTGCCAGGCATGAGGTATCTCCTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTTATTAAAAGAAAACTCAGTGCCAGGCATGAGGTATCTCCTTAG  250

seq1  GAGTTATTAGTCAGGGCAGGTCCCCAGGTACCTACAACAACACAGCCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATTAGTCAGGGCAGGTCCCCAGGTACCTACAACAACACAGCCTAT  300

seq1  CATCCTTGGTTGCTTGCCATAACTAAACAGTGGGCCTCTAGTGCTGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTGGTTGCTTGCCATAACTAAACAGTGGGCCTCTAGTGCTGGAGA  350

seq1  CAGCACACAGCTTAGTTACAGAAGGCAGAGAAATGTATATTGAAATGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACACAGCTTAGTTACAGAAGGCAGAGAAATGTATATTGAAATGAGC  400

seq1  AGAAAACTATGCACCTGCTGGATACCTTCCATAGTTCCACTGTGTAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTATGCACCTGCTGGATACCTTCCATAGTTCCACTGTGTAGGCT  450

seq1  CTTGGAAAAGCCACCAATGATCTGACCTAGCACTGGACCCTGAATGCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAAAGCCACCAATGATCTGACCTAGCACTGGACCCTGAATGCTAC  500

seq1  AGTACTGACATGCCAGGCAAGATGTATTGACAGAGAAATGGTGGCATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGACATGCCAGGCAAGATGTATTGACAGAGAAATGGTGGCATGAC  550

seq1  TGTTACAGGTAATAAACTTCTTTCTGATTGATTCTGAGGCTGTTATTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAGGTAATAAACTTCTTTCTGATTGATTCTGAGGCTGTTATTATA  600

seq1  AACCTGGTCAAAAGTACTTGACAAGGAAGGTCATTTGACCTGGTAAGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGTCAAAAGTACTTGACAAGGAAGGTCATTTGACCTGGTAAGGGA  650

seq1  ATATATCGGTCTTTTGTTACAACATGTTGTCAAATGCTTTCTAACTCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCGGTCTTTTGTTACAACATGTTGTCAAATGCTTTCTAACTCTTC  700

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  750

seq1  TCTTTCTTTCTTTCTTTCTTTCTCCTTTCTACCTTGTCCTCCCAGTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTCCTTTCTACCTTGTCCTCCCAGTTCCT  800

seq1  TCTTACCTCCCCTCCCATCCTGATCCACTCTCTTTCTGTCTCTCATTAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCTCCCCTCCCATCCTGATCCACTCTCTTTCTGTCTCTCATTAGG  850

seq1  AGAAAATATGCTTCTAAAGGATAAAATATAATGATAGAACTAAAACTAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATATGCTTCTAAAGGATAAAATATAATGATAGAACTAAAACTAAC  900

seq1  ACATGGAAATTGGTCAAAAAAAAACAACCAACCAACCAACCAAACAATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAAATTGGTCAAAAAAAAACAACCAACCAACCAACCAAACAATCA  950

seq1  AACAAACAAACAGAGGACCTGGCACAGACACATGCAGGCCCTGTGTTTGT  1000
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  AACAA--CAACAGAGGACCTGGCACAGACACATGCAGGCCCTGTGTTTGT  998

seq1  GGAGAGCAACCTACAGTCAGCAACAGCCTGGGTTGTTAGGGGGTTCTCAT  1050
       |||||||||||||||||||||||||||||||||||||||||  ||||||
seq2  -GAGAGCAACCTACAGTCAGCAACAGCCTGGGTTGTTAGGGG--TCTCAT  1045

seq1  GAAACCCTTGGGTCAACAACTCAATTAAATGAGAAAAAGAGATTTCTGAT  1100
      | ||||||||||||||| |||| |||||||||||||||||||||||||||
seq2  G-AACCCTTGGGTCAAC-ACTC-ATTAAATGAGAAAAAGAGATTTCTGAT  1092

seq1  TTCTGAAATTGTGTGATGTTGGGC  1124
      |||||||||||||||||| |||||
seq2  TTCTGAAATTGTGTGATG-TGGGC  1115

seq1: chrX_161691528_161692812
seq2: B6Ng01-108N04.g_65_1300 (reverse)

seq1  TATCAAAAGACCAGAACATTTAGAATAAAAGACATCAGTTTTTCTGGTCA  50
      ||||||||||| ||||| || ||    ||||||||| ||     | ||||
seq2  TATCAAAAGACGAGAACCTTGAG----AAAGACATC-GT-----TCGTCA  40

seq1  GGTATAATCTTCCAGGCAACAACAGATGCCCACTTGTTGCCACTACCTCA  100
      |     || || ||| |    ||| | |||   ||| |||   |||||| 
seq2  G-----ATATTTCAGAC----ACACAGGCC--ATTG-TGC--ATACCTC-  75

seq1  ACCTTGCCTACTCCATATGTCTTTCAGTGCTAAAGATAGCACCTGACTTT  150
      |||||| ||| |||||||||| ||||||||| |||||||||||||||  |
seq2  ACCTTG-CTA-TCCATATGTC-TTCAGTGCT-AAGATAGCACCTGAC--T  119

seq1  AGGGCCAGCTGAATTCTCTCCAGATGATGCTCATTGAGACTGGTATTGGT  200
      ||   ||||||||||||||||||| | ||| || ||||||||   || | 
seq2  AG---CAGCTGAATTCTCTCCAGA-GGTGC-CA-TGAGACTG---TTTG-  159

seq1  TTCCAGAACTGCAGAGCATGTCTCTATTTCTGGGTTTCCACCGACTTGTG  250
      |||||| |||||||||||| ||||||||||||||||||||||||| ||||
seq2  TTCCAG-ACTGCAGAGCATTTCTCTATTTCTGGGTTTCCACCGAC-TGTG  207

seq1  TCATTATCACTTTCTTCCATTAAGGCCAGGAATGCAAATTGACCTTAGGA  300
      |||||||||| |||||||||  | |||||  ||||||| |||||||||||
seq2  TCATTATCAC-TTCTTCCAT--AAGCCAG--ATGCAAA-TGACCTTAGGA  251

seq1  TGCAATGTGAAGAGTAGATGCAAAGAGTAGCCAAGGATTTATGTTTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGTGAAGAGTAGATGCAAAGAGTAGCCAAGGATTTATGTTTTCTG  301

seq1  TACAATTAATGAGGTCTACACTTTTCCTTAGACTCATTCGACAGCAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTAATGAGGTCTACACTTTTCCTTAGACTCATTCGACAGCAGACT  351

seq1  CTCATTAAGAGAAGAGTAAAAGATTCCTAATTTTTCTGTGTTTGAGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAAGAGAAGAGTAAAAGATTCCTAATTTTTCTGTGTTTGAGGGAG  401

seq1  ACAATCTGCTGCACTCACAAGCCTATTCCATAGGGTACAGTAACCCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTGCTGCACTCACAAGCCTATTCCATAGGGTACAGTAACCCTACA  451

seq1  TGTTGAGAGTTTTCTTAAATTCAATTTGCTTCATAAATGTGCAACTGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGAGTTTTCTTAAATTCAATTTGCTTCATAAATGTGCAACTGTTA  501

seq1  AGATAATAGGGCAGCTAATCTCATATACAAATGGAGAGCTCTTGGGCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATAGGGCAGCTAATCTCATATACAAATGGAGAGCTCTTGGGCTTA  551

seq1  GCAAATGAAAGAAAGAAAACCTTACCAGTGTTGTAATGCTTTGTGCAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGAAAGAAAGAAAACCTTACCAGTGTTGTAATGCTTTGTGCAATA  601

seq1  ACCAAGCTCCTTCTCTTCTTTCAAAATAAACTGGGGCAAGGTGAGTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCTCCTTCTCTTCTTTCAAAATAAACTGGGGCAAGGTGAGTCCTT  651

seq1  CAGCAACTTGTACTGGACCATCACTTAACCACTCAAATATCAGGTCATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACTTGTACTGGACCATCACTTAACCACTCAAATATCAGGTCATTC  701

seq1  ATGGTGTACCCAACTGGAGGAAAGAAGTAGTAACAAACAATGTATCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTACCCAACTGGAGGAAAGAAGTAGTAACAAACAATGTATCTTTT  751

seq1  CTGAGAAAAGGCAAAATGTAATGACAGGTGGGCAAGCAGAGGAAGGAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAAAGGCAAAATGTAATGACAGGTGGGCAAGCAGAGGAAGGAATC  801

seq1  ATTTCAGGTACAGTTTTTATAAGAGCTGCTGTAGTCATCATAACTACGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGGTACAGTTTTTATAAGAGCTGCTGTAGTCATCATAACTACGTG  851

seq1  TCTGATGACACAGAGAAACTGAACACAGCAAGGTATTTCTGATTAATTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGACACAGAGAAACTGAACACAGCAAGGTATTTCTGATTAATTTT  901

seq1  TTTCGTGTGGATAACGAGAGAAAGGAATCTATAGAATCTTTTATCTCTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTGTGGATAACGAGAGAAAGGAATCTATAGAATCTTTTATCTCTGG  951

seq1  CCTCTTTATTCACTAACCCTCTCTGAAGAGCAAACAAGTAAACAAGCACC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTATTCACTAACCCTCTCTGAAGAGCAAACAAGTAAACAAGCACC  1001

seq1  GAAACCGTTTGAAGATTTTCTTCACTTGAAAGAGCTGTGTCTGTGGCAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCGTTTGAAGATTTTCTTCACTTGAAAGAGCTGTGTCTGTGGCAGT  1051

seq1  TCAATAAGACAATCCAATTTGTGGTGCTGTCTTAGTATCTCAAATAAAGC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAGACAATCCAATTTGTGGTGCTGTCTTAGTATCTCAAATAAAGC  1101

seq1  CACTTCTTTTGAAATGTTTAATGAGAATGAATTCATTATAGGCCGGCCTG  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTTTTGAAATGTTTAATGAGAATGAATTCATTATAGGCCGGCCTG  1151

seq1  CAAGTATTACCATTGCATATTTGGCTTCTTCTGGAGTGTTAGCTTTACTT  1250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATTACCATTGCATATTTGGCTTCTTCTGGAGTGTTAGCTTTACTT  1201

seq1  GTAGGAGCCTTTTGTTAATTACTGAGAGTGAATTC  1285
      |||||||||||||||||||||||||||||||||||
seq2  GTAGGAGCCTTTTGTTAATTACTGAGAGTGAATTC  1236