BAC Information

Click to search

BAC

Clone NameB6Ng01-108N18
ChromosomeX (Build37)
Map Location 100,000,810 - 100,134,182
singlet/doubletdoublet
Overlap geneDmrtc1c, EG668360, LOC668357, 1700031F05Rik, EG668369, Dmrtc1a, 1700011M02Rik, 1700018G05Rik, EG331480
Upstream geneLOC100042465, H3f3a-ps1, EG621083, Rgag4, LOC100042480, LOC331476, Pin4, LOC670921, Ercc6l, LOC668318, Rps4x, LOC100043080, Cited1, Hdac8, Phka1, LOC668331, LOC100042516, EG668339, Dmrtc1b, EG668343, LOC100043105, EG668349, EG382233
Downstream geneEG668382, LOC668387, EG245545, LOC100042610, EG621205, Nap1l2, LOC668217, 4930519F16Rik, LOC100042615, Cdx4, LOC671052, Chic1, Tsx, Tsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2, EG621381, EG668426, LOC668430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108N18.bB6Ng01-108N18.g
ACCDH915933DH915934
length645909
definitionDH915933|Mus musculus domesticus DNA, BAC clone: B6Ng01-108N18, 5' end.DH915934|Mus musculus domesticus DNA, BAC clone: B6Ng01-108N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,000,810 - 100,001,454)(100,133,278 - 100,134,182)
sequence
gaattcttggtcttttacagctgcaaaggagaaccctgtgtcccagcctg
aagacctgcctcaagcaagcccccaggaggtaaggagaatctgttgctag
agtgggaggctcccaccagttactgttaagaccccttttaactgtgtctt
caagtcagggctctcacctctgacaggtcagcacattgtcttgtgcggac
attggcaaatggcacttcctcttgagcctaagtcttctcagcagcagttg
agcacgagactggaggggagggggtctggagaggtcctcagagccctgac
attctagattcctgccatcagactatcatttgcccatccctcctctcttc
ctgggccggcctggaagccaatcccctaccttcgctctctgtctcctcag
gagagcccccacgggtctcaagtgtattgctggcccccagcactttcacc
tctgccttacatgtcagtgcccccagagcagcagttggtggctcctcctt
ccacggagattcacggggcttttgctgagtccaacccgtgagtagaaagg
gaccttgcagttgactgtgtcttgtgtctctgtgagtcaggacatgggct
tactgccacaggagcaggaggagggggatgttcggagggaggagg
gaattcagcagacttatttagcattctgtttacagtagttattttcagtg
agggctcaatcgtgctatactatgccatcacctttcaacaacaccttgga
taacagtcctagataattggagtttccctggagtgaaggtggattgaaca
ttttcttgtagacatgagaaaaacacacataaacctgttgttatgtcatt
gtggaagagaaagattgaggaaggaaactgacattcatataaacgacgta
aatatgcaccagtagaggccatgctctgtgcacacgtctgcagccccaga
gttgggaagcacctgcctgatagttaccataagtggagatcagcctggtc
tacacagtgagtacttgtcaaacccagtctcatttgccaaagacagaata
cctagactaggactgtctgtgtggcatcaggtaatatatattggctggtt
tcagaaactgtagacatataattaggcaagtttcggtaatattggcatta
agagtctacttgtagtcatgaatattcaaaacatagtacatgcttcagac
tcctaagtcaaaggtctcactaaaaatgctcactgaaacaggccagtggg
tgtccctttagaccacctccttgtgtgcacttatactaatgtattttcat
tcacaaccgtctactattccctttcagctttaacttactcagtgatatat
aatttgaaatattcctccaggacatttagtttgagacagtcaccagtagc
ctaggcctgcctagaaatcactatgtaaaagctttatggctttgaactag
ccctcacatttgttggaatactagtttacctgctaccaaggtcagctttt
caattctgtaatcaaaaaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_100000810_100001454
seq2: B6Ng01-108N18.b_45_689

seq1  GAATTCTTGGTCTTTTACAGCTGCAAAGGAGAACCCTGTGTCCCAGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTCTTTTACAGCTGCAAAGGAGAACCCTGTGTCCCAGCCTG  50

seq1  AAGACCTGCCTCAAGCAAGCCCCCAGGAGGTAAGGAGAATCTGTTGCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTGCCTCAAGCAAGCCCCCAGGAGGTAAGGAGAATCTGTTGCTAG  100

seq1  AGTGGGAGGCTCCCACCAGTTACTGTTAAGACCCCTTTTAACTGTGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAGGCTCCCACCAGTTACTGTTAAGACCCCTTTTAACTGTGTCTT  150

seq1  CAAGTCAGGGCTCTCACCTCTGACAGGTCAGCACATTGTCTTGTGCGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAGGGCTCTCACCTCTGACAGGTCAGCACATTGTCTTGTGCGGAC  200

seq1  ATTGGCAAATGGCACTTCCTCTTGAGCCTAAGTCTTCTCAGCAGCAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCAAATGGCACTTCCTCTTGAGCCTAAGTCTTCTCAGCAGCAGTTG  250

seq1  AGCACGAGACTGGAGGGGAGGGGGTCTGGAGAGGTCCTCAGAGCCCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGAGACTGGAGGGGAGGGGGTCTGGAGAGGTCCTCAGAGCCCTGAC  300

seq1  ATTCTAGATTCCTGCCATCAGACTATCATTTGCCCATCCCTCCTCTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGATTCCTGCCATCAGACTATCATTTGCCCATCCCTCCTCTCTTC  350

seq1  CTGGGCCGGCCTGGAAGCCAATCCCCTACCTTCGCTCTCTGTCTCCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCGGCCTGGAAGCCAATCCCCTACCTTCGCTCTCTGTCTCCTCAG  400

seq1  GAGAGCCCCCACGGGTCTCAAGTGTATTGCTGGCCCCCAGCACTTTCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCCCCACGGGTCTCAAGTGTATTGCTGGCCCCCAGCACTTTCACC  450

seq1  TCTGCCTTACATGTCAGTGCCCCCAGAGCAGCAGTTGGTGGCTCCTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTACATGTCAGTGCCCCCAGAGCAGCAGTTGGTGGCTCCTCCTT  500

seq1  CCACGGAGATTCACGGGGCTTTTGCTGAGTCCAACCCGTGAGTAGAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGAGATTCACGGGGCTTTTGCTGAGTCCAACCCGTGAGTAGAAAGG  550

seq1  GACCTTGCAGTTGACTGTGTCTTGTGTCTCTGTGAGTCAGGACATGGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGCAGTTGACTGTGTCTTGTGTCTCTGTGAGTCAGGACATGGGCT  600

seq1  TACTGCCACAGGAGCAGGAGGAGGGGGATGTTCGGAGGGAGGAGG  645
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCACAGGAGCAGGAGGAGGGGGATGTTCGGAGGGAGGAGG  645

seq1: chrX_100133278_100134182
seq2: B6Ng01-108N18.g_67_974 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACACGTTCTTTGATTA  50
      ||||||||||||||||||||||||||||||||||||||| | ||||||||
seq2  ACACACACACACACACACACACACACACACACACACACGGTTTTTGATTA  50

seq1  CAGAATTG-AAAGCTGACCTTGGTAGCAGGT-AACTAGTATTCCAACAAA  98
      |||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  CAGAATTGAAAAGCTGACCTTGGTAGCAGGTAAACTAGTATTCCAACAAA  100

seq1  TGTGAGGGCTAGTTCAAAGCCAT-AAGCTTTTACATAGTGATTTCTAGGC  147
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGTGAGGGCTAGTTCAAAGCCATAAAGCTTTTACATAGTGATTTCTAGGC  150

seq1  AGGCCTAGGCTACTGGTGACTGTCTCAAACTAAATGTCCTGGAGGAATAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTAGGCTACTGGTGACTGTCTCAAACTAAATGTCCTGGAGGAATAT  200

seq1  TTCAAATTATATATCACTGAGTAAGTTAAAGCTGAAAGGGAATAGTAGAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTATATATCACTGAGTAAGTTAAAGCTGAAAGGGAATAGTAGAC  250

seq1  GGTTGTGAATGAAAATACATTAGTATAAGTGCACACAAGGAGGTGGTCTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGAATGAAAATACATTAGTATAAGTGCACACAAGGAGGTGGTCTA  300

seq1  AAGGGACACCCACTGGCCTGTTTCAGTGAGCATTTTTAGTGAGACCTTTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACACCCACTGGCCTGTTTCAGTGAGCATTTTTAGTGAGACCTTTG  350

seq1  ACTTAGGAGTCTGAAGCATGTACTATGTTTTGAATATTCATGACTACAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGAGTCTGAAGCATGTACTATGTTTTGAATATTCATGACTACAAG  400

seq1  TAGACTCTTAATGCCAATATTACCGAAACTTGCCTAATTATATGTCTACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCTTAATGCCAATATTACCGAAACTTGCCTAATTATATGTCTACA  450

seq1  GTTTCTGAAACCAGCCAATATATATTACCTGATGCCACACAGACAGTCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGAAACCAGCCAATATATATTACCTGATGCCACACAGACAGTCCT  500

seq1  AGTCTAGGTATTCTGTCTTTGGCAAATGAGACTGGGTTTGACAAGTACTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGGTATTCTGTCTTTGGCAAATGAGACTGGGTTTGACAAGTACTC  550

seq1  ACTGTGTAGACCAGGCTGATCTCCACTTATGGTAACTATCAGGCAGGTGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTAGACCAGGCTGATCTCCACTTATGGTAACTATCAGGCAGGTGC  600

seq1  TTCCCAACTCTGGGGCTGCAGACGTGTGCACAGAGCATGGCCTCTACTGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAACTCTGGGGCTGCAGACGTGTGCACAGAGCATGGCCTCTACTGG  650

seq1  TGCATATTTACGTCGTTTATATGAATGTCAGTTTCCTTCCTCAATCTTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATTTACGTCGTTTATATGAATGTCAGTTTCCTTCCTCAATCTTTC  700

seq1  TCTTCCACAATGACATAACAACAGGTTTATGTGTGTTTTTCTCATGTCTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCACAATGACATAACAACAGGTTTATGTGTGTTTTTCTCATGTCTA  750

seq1  CAAGAAAATGTTCAATCCACCTTCACTCCAGGGAAACTCCAATTATCTAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAATGTTCAATCCACCTTCACTCCAGGGAAACTCCAATTATCTAG  800

seq1  GACTGTTATCCAAGGTGTTGTTGAAAGGTGATGGCATAGTATAGCACGAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTATCCAAGGTGTTGTTGAAAGGTGATGGCATAGTATAGCACGAT  850

seq1  TGAGCCCTCACTGAAAATAACTACTGTAAACAGAATGCTAAATAAGTCTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCTCACTGAAAATAACTACTGTAAACAGAATGCTAAATAAGTCTG  900

seq1  CTGAATTC  905
      ||||||||
seq2  CTGAATTC  908