BAC Information

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BAC

Clone NameB6Ng01-109D10
ChromosomeX (Build37)
Map Location 120,258,992 - 120,410,390
singlet/doubletdoublet
Overlap geneLOC100039751
Upstream geneNap1l3, 3110007F17Rik
Downstream geneLOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364, EG546368, LOC100038940, LOC100038941, EG625699, LOC100038942
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109D10.bB6Ng01-109D10.g
ACCDH916179DH916180
length1,089912
definitionDH916179|Mus musculus domesticus DNA, BAC clone: B6Ng01-109D10, 5' end.DH916180|Mus musculus domesticus DNA, BAC clone: B6Ng01-109D10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,258,992 - 120,260,096)(120,409,477 - 120,410,390)
sequence
gaattcttatgtatatcaagaagttggagtaactgcttcattcttcccct
ctactttcaataatttataaaagaatttgaaggtattatttagattttgt
ttgtactttttggtttttgaatattgaagtagttggtgttgtttcatgag
ttaactttcgtccatttttacgtatgtaaataatcaagatcttgaggtgt
atttacagagagcagtgattattccactgtgtttcatttcaagcacttaa
taaatgaacaaacaaatgctaaggtgtttcccagtcgttaaaggaagttg
attttcttggtgaggatctggggtttgatttctagccaacacgtggcagc
ttacatctgtctttaactacaatcccaggtaatctgacaccatctttgaa
cttgaataggcaccaggcatgtttatagtacacaaatatagatatagaca
aaatatttgtgaatatcatataaaataagattttaaaaaatggaaatttt
tttcattccaaatatagaccttagtgaatgcataaccagacatgattatt
atacaatgtcttctgtctcaactcaagtcttagattagctagtgatatat
ccctagcatgtatatatatagtccaataaaattttactatataatggata
ttgtacacacaaagacaaaggaggttctctctttacccgcctagattccc
tcttttctttcagttccaagatgcatcccaggcttgaacccagacatgag
agctgcagactggaccaacaaattggtgtcccacgcaggatctgggaaat
ggcagaggacacgggaaggaacactgctggtttggagctccatggaagaa
gaaaatattaaagaaaatttgtaccagaacatgagaagaaacaggcataa
ggttgccaggtgtggtacagtctaagctggaatggcgctaaacctgcatg
ctgattcactaggttcagcagtgagattatcagaatctagaacataaagt
cagttagcgacagctcagagctgctctagttagagagaaaaagggtttag
attaagttagttgattggtcacagtcagaactgcatcag
gaattctttgacaaactatataaatctgttcctgtgacagttaggacctc
tattccctatcatgaaagaaatatctgtgcagaggggttttacttcacaa
aagtggacaaatataaattttattaactatcttttcagagctatttatta
tcagctatctttgtctgggcatctctaagggctaaagtttgatgccttgg
tatatctatatattattcagtaattatattagggatattatatacttatt
ataactgacatacattgttctgatagattagaatagagcctggatagcta
tctcaatatatttcaaaagcccaagtacacatatttcagggaatcatatc
taggggctacacaaattaagtataggactgaaaaatattatttctgataa
ttaaatcaatggaaaacatattctcacaaaaatatacttacatattttta
atatatttgtttgtaatctttgttagctaaaagcacgtgttttatttggg
aaatgaccaaagcactggtgtgtctaatgcatagattatttctcagcaat
taaaaaacaatgagtactcccaccttatcctctctttctccatttgtttt
tctccctctgatacacagacacaaaattttcaatcagtaggaactcctct
ggaagtatcaggaaaatgccacacattacaaaacaagcattgggtaattt
ccaggccaatactctcattttaattgtaataggaaaaaaactcccctaga
taccttaaagaggcagagactcactcccttctaaacatatgtagaataat
aggtgacttttgagaaatattctggagcaaagcagcaaatgagaaatagg
aagagaaggagaggaaagagagagagagagagagagagagagagagagag
agagagagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_120258992_120260096
seq2: B6Ng01-109D10.b_48_1136

seq1  GAATTCTTATGTATATCAAGAAGTTGGAGTAACTGCTTCATTCTTCCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGTATATCAAGAAGTTGGAGTAACTGCTTCATTCTTCCCCT  50

seq1  CTACTTTCAATAATTTATAAAAGAATTTGAAGGTATTATTTAGATTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTCAATAATTTATAAAAGAATTTGAAGGTATTATTTAGATTTTGT  100

seq1  TTGTACTTTTTGGTTTTTGAATATTGAAGTAGTTGGTGTTGTTTCATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTTTTTGGTTTTTGAATATTGAAGTAGTTGGTGTTGTTTCATGAG  150

seq1  TTAACTTTCGTCCATTTTTACGTATGTAAATAATCAAGATCTTGAGGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTCGTCCATTTTTACGTATGTAAATAATCAAGATCTTGAGGTGT  200

seq1  ATTTACAGAGAGCAGTGATTATTCCACTGTGTTTCATTTCAAGCACTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAGAGAGCAGTGATTATTCCACTGTGTTTCATTTCAAGCACTTAA  250

seq1  TAAATGAACAAACAAATGCTAAGGTGTTTCCCAGTCGTTAAAGGAAGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAACAAACAAATGCTAAGGTGTTTCCCAGTCGTTAAAGGAAGTTG  300

seq1  ATTTTCTTGGTGAGGATCTGGGGTTTGATTTCTAGCCAACACGTGGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTGGTGAGGATCTGGGGTTTGATTTCTAGCCAACACGTGGCAGC  350

seq1  TTACATCTGTCTTTAACTACAATCCCAGGTAATCTGACACCATCTTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTGTCTTTAACTACAATCCCAGGTAATCTGACACCATCTTTGAA  400

seq1  CTTGAATAGGCACCAGGCATGTTTATAGTACACAAATATAGATATAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATAGGCACCAGGCATGTTTATAGTACACAAATATAGATATAGACA  450

seq1  AAATATTTGTGAATATCATATAAAATAAGATTTTAAAAAATGGAAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTGTGAATATCATATAAAATAAGATTTTAAAAAATGGAAATTTT  500

seq1  TTTCATTCCAAATATAGACCTTAGTGAATGCATAACCAGACATGATTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCCAAATATAGACCTTAGTGAATGCATAACCAGACATGATTATT  550

seq1  ATACAATGTCTTCTGTCTCAACTCAAGTCTTAGATTAGCTAGTGATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATGTCTTCTGTCTCAACTCAAGTCTTAGATTAGCTAGTGATATAT  600

seq1  CCCTAGCATGTATATATATAGTCCAATAAAATTTTACTATATAATGGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGCATGTATATATATAGTCCAATAAAATTTTACTATATAATGGATA  650

seq1  TTGTACACACAAAGACAAAGGAGGTTCTCTCTTTACCCGCCTAGATTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACACACAAAGACAAAGGAGGTTCTCTCTTTACCCGCCTAGATTCCC  700

seq1  TCTTTTCTTTCAGTTCCAAGATGCATCCCAGGCTTGAACCCAGACATGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTCAGTTCCAAGATGCATCCCAGGCTTGAACCCAGACATGAG  750

seq1  AGCTGCAGACTGGACCAACAAATTGGTGTCCCACGCAGGATCTGGGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAGACTGGACCAACAAATTGGTGTCCCACGCAGGATCTGGGAAAT  800

seq1  GGCAGAGGACACGGGAAGGAACACTGCTGGTTTGGAGCTCCATGGAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGACACGGGAAGGAACACTGCTGGTTTGGAGCTCCATGGAAGAA  850

seq1  GAAAATAATTAAAGAAAATTTGTACCAGAACATGAGAAGAAACAGGCATA  900
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAT-ATTAAAGAAAATTTGTACCAGAACATGAGAAGAAACAGGCATA  899

seq1  AGGTTGCCAGGTGTGGTACAGTCTAAGCTGGAATGGCGCTAAACCTGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCCAGGTGTGGTACAGTCTAAGCTGGAATGGCGCTAAACCTGCAT  949

seq1  GCTGAATTCACTTAGGTTCAGCAGTGAGATTATCAGAATCTAGGAACATA  1000
      |||| |||||| |||||||||||||||||||||||||||||| |||||| 
seq2  GCTG-ATTCAC-TAGGTTCAGCAGTGAGATTATCAGAATCTA-GAACAT-  995

seq1  AAAGTCAGTTAGCGACAGCTTCCAGAGCTGCTTCTTAGGTTAGAGAGAAA  1050
      ||||||||||||||||||||  ||||||||| |||   ||||||||||||
seq2  AAAGTCAGTTAGCGACAGCT--CAGAGCTGC-TCT--AGTTAGAGAGAAA  1040

seq1  AAGGGGTTTAGATTTTATAGTTAGTTGGATTGGTCACAGTCAGAAACTGC  1100
      || |||||||||||    |||||||| |||||||||||||||| ||||||
seq2  AA-GGGTTTAGATT---AAGTTAGTT-GATTGGTCACAGTCAG-AACTGC  1084

seq1  ATCAG  1105
      |||||
seq2  ATCAG  1089

seq1: chrX_120409477_120410390
seq2: B6Ng01-109D10.g_67_978 (reverse)

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTTTC  50
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT-CTCTTTC  49

seq1  CTCTTCCTTCTCTTCCTATTTCTCATTTGCTGCTTTGCTCCAGAATATTT  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTC-TCCTTCTCTTCCTATTTCTCATTTGCTGCTTTGCTCCAGAATATTT  98

seq1  CTCAAAAGTCACCTATTATTCTACATATGTTTAGAAGGGAGTGAGTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAGTCACCTATTATTCTACATATGTTTAGAAGGGAGTGAGTCTCT  148

seq1  GCCTCTTTAAGGTATCTAGGGGAGTTTTTTTCCTATTACAATTAAAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTTAAGGTATCTAGGGGAGTTTTTTTCCTATTACAATTAAAATGA  198

seq1  GAGTATTGGCCTGGAAATTACCCAATGCTTGTTTTGTAATGTGTGGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTGGCCTGGAAATTACCCAATGCTTGTTTTGTAATGTGTGGCATT  248

seq1  TTCCTGATACTTCCAGAGGAGTTCCTACTGATTGAAAATTTTGTGTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGATACTTCCAGAGGAGTTCCTACTGATTGAAAATTTTGTGTCTGT  298

seq1  GTATCAGAGGGAGAAAAACAAATGGAGAAAGAGAGGATAAGGTGGGAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGAGGGAGAAAAACAAATGGAGAAAGAGAGGATAAGGTGGGAGTA  348

seq1  CTCATTGTTTTTTAATTGCTGAGAAATAATCTATGCATTAGACACACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGTTTTTTAATTGCTGAGAAATAATCTATGCATTAGACACACCAG  398

seq1  TGCTTTGGTCATTTCCCAAATAAAACACGTGCTTTTAGCTAACAAAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGGTCATTTCCCAAATAAAACACGTGCTTTTAGCTAACAAAGATT  448

seq1  ACAAACAAATATATTAAAAATATGTAAGTATATTTTTGTGAGAATATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAATATATTAAAAATATGTAAGTATATTTTTGTGAGAATATGTT  498

seq1  TTCCATTGATTTAATTATCAGAAATAATATTTTTCAGTCCTATACTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTGATTTAATTATCAGAAATAATATTTTTCAGTCCTATACTTAAT  548

seq1  TTGTGTAGCCCCTAGATATGATTCCCTGAAATATGTGTACTTGGGCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAGCCCCTAGATATGATTCCCTGAAATATGTGTACTTGGGCTTTT  598

seq1  GAAATATATTGAGATAGCTATCCAGGCTCTATTCTAATCTATCAGAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATATTGAGATAGCTATCCAGGCTCTATTCTAATCTATCAGAACAA  648

seq1  TGTATGTCAGTTATAATAAGTATATAATATCCCTAATATAATTACTGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTCAGTTATAATAAGTATATAATATCCCTAATATAATTACTGAAT  698

seq1  AATATATAGATATACCAAGGCATCAAACTTTAGCCCTTAGAGATGCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAGATATACCAAGGCATCAAACTTTAGCCCTTAGAGATGCCCAG  748

seq1  ACAAAGATAGCTGATAATAAATAGCTCTGAAAAGATAGTTAATAAAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATAGCTGATAATAAATAGCTCTGAAAAGATAGTTAATAAAATTT  798

seq1  ATATTTGTCCACTTTTGTGAAGTAAAACCCCTCTGCACAGATATTTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTCCACTTTTGTGAAGTAAAACCCCTCTGCACAGATATTTCTTT  848

seq1  CATGATAGGGAATAGAGGTCCTAACTGTCACAGGAACAGATTTATATAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAGGGAATAGAGGTCCTAACTGTCACAGGAACAGATTTATATAGT  898

seq1  TTGTCAAAGAATTC  914
      ||||||||||||||
seq2  TTGTCAAAGAATTC  912