BAC Information

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BAC

Clone NameB6Ng01-109H16
ChromosomeX (Build37)
Map Location 118,124,838 - 118,125,933
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674318, EG545741, LOC100039461, Pcdh11x, H2afb3, LOC245576
Downstream geneLOC385419, EG434907, EG245575
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109H16.bB6Ng01-109H16.g
ACCDH916376DH916377
length1,2621,080
definitionDH916376|Mus musculus domesticus DNA, BAC clone: B6Ng01-109H16, 5' end.DH916377|Mus musculus domesticus DNA, BAC clone: B6Ng01-109H16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatcagtccttcaaagaagacctaatacaaatactcttcaaact
attccagaaaatagaaacagaaagaacactaccaaatttattctatgaaa
ccacaatcatggatataactaaaccacacaaagacctaacatagaaaaag
aatgtcagaatttcacttatgaatatcgatgcaaaaatattcaataaaat
tatagcaaaccaaattcaagagcacatcaaaacaatcatctgtcatgatc
aagtaggcctcatcccaggatgcagggatggttcagtatatggagatcaa
taaatgtaatccactatataaacaaactctaagaaaaaaaataaaccaca
tgatcatctcatctgatgctgagaaattatttgacaaaattcaacacccc
attttggtaaaagtcttggaaagatcaggaattcaaggctcataatgaaa
catagtaaaagcaatatacagaaaaccagtagccaacatcaaactaaagg
gagagaaacttgaaggaaccccactaaaatctgggatgagactttgccct
gacctattcaatatagtacttaaagtccttaccagtgcaattagacaaca
aaagggggtaaaagtaatacaaatttgaaaggaagaagtcaaaatatcac
tatttgcagatatatgagagtaaatttaagtgaccccaaaaacaatctac
cacagaactcctaagcctgataaacaactttagtaaagtggctggatata
aaattaactcaaacaaatcagtagctgccttctactcaaaggataaacag
gcttagaaagaaattagggaaatgacaccattcacaatcgtcacaaaata
tataaaatactttggtgtgcatctaaccaagcaagtgaaagatctgtatg
atagaacttcaagtatctgaagaagaaatcaaagaagaccagaggagatg
gaaagatatcccatactcattgactggcaggtatagtatagcaaaaaggc
catcttgcctaaagcaatctataatattcatgaagtccaatcaaattcca
actcattcttcatagaattagaagagcattttcaattcattgaataacag
actcaggatgcaaaatttttaacataggaatcctgggagaatcaccatcc
tggactcagctgtgtcacgagcataatgataaaccgttatgattgacgaa
atggcgagtaatctacagtggattgaattgtagagccaaaatgtaagcct
catctccctatg
gaattctctgactgcctggagttatatcaggaatggtctcaagactgcta
tgtcctgcttgtgcattataacactaggcagaaggcatcttgggtatggt
ctgctccctgacacctgtgctaaactagactgatagtcttcccaggttag
ctccctgtcttaaactcagagacactgttctgttgctaaccaccatagtg
gttactggtgaggttcatctgttttgggctcactcaaatggtggtggggc
actctgattgtagaattcttatagtcttaggcttgcttcctgtcctggga
gaccatcagaccctgtctcataccagattggtgttcatttaaggctcact
ttttttttagggaatgttaggctacaaattcagattttcataggtcagaa
cactgagcacagacataaactcttctctgtggccacctattgacacacat
gtgacacagcagccatacctgcaatgcctcaaggggcaggtagttaaatc
ttttaactttagattctgagctttctgaatcctaagtactattttttttc
tgagtccattcctattggcataaaaataaaactctacagatttggcattt
tattaaaataggtttcttacaagcctagagacaggggagtcaaagattaa
agtatcactcatttttgtggtctggcaaaggtcacttctacactggtatt
attttctcatcctatttgcacaaaagacaaagctactatatcctcacaaa
ttaaaaggaacagagaaaagtaagtacagtatacttccattaatttatga
aagtatagtgctcatgacaaattgcttcttaaatggtcccagctcatatt
acttgggagtactttattaattagacattttcaaagtgttcaaaacatca
ttttaagggagaggagatttatttggcatggtttgcacatttctgttgat
acttttttagctcagtgcttagatagagcataccctatgatcatgtgcag
agaactctttgactctggaagagaggtagcatagagacaatgctgcacta
agaaatgaagaaagaaactcttactctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_118124838_118125933
seq2: B6Ng01-109H16.g_70_1149 (reverse)

seq1  AAAAGAGTAGAAGGTGTTCTTTTCTTTCATCTCTTAGTGCAGGCATTGTC  50
      ||||||||  |||   ||||||   ||||| |||||||||| ||||||||
seq2  AAAAGAGT--AAGAGTTTCTTT--CTTCATTTCTTAGTGCA-GCATTGTC  45

seq1  TCTATGCTACCTCTCTTCCAGGAGTCAAAGAGTTCTCTGCAACATGATTC  100
      |||||||||||||||||||| ||||||||||||||||||| |||||||  
seq2  TCTATGCTACCTCTCTTCCA-GAGTCAAAGAGTTCTCTGC-ACATGAT--  91

seq1  CATAAGGGTAATGCTCTATCTAAGCACTTGAGCTAAAAAAAGTTATCAAC  150
      ||| ||||| ||||||||||||||||| ||||||||||||   |||||||
seq2  CAT-AGGGT-ATGCTCTATCTAAGCAC-TGAGCTAAAAAA--GTATCAAC  136

seq1  AGAAATGTTGCAAACCATGCCAAAATAAATCTCCTCTCCCTTAAAATGAT  200
      ||||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAAATG-TGCAAACCATGCC-AAATAAATCTCCTCTCCCTTAAAATGAT  184

seq1  GTTTTGAACACTTTGAAAATGTCTAATTAATAAAGTACT-CCAAGTAATA  249
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTTTTGAACACTTTGAAAATGTCTAATTAATAAAGTACTCCCAAGTAATA  234

seq1  TGAGCTGGGACCATTTAAGAAGCAATTTTGTCATGAGCACTATACTTTCA  299
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGAGCTGGGACCATTTAAGAAGCAA-TTTGTCATGAGCACTATACTTTCA  283

seq1  TAAATTAATGGAAGTATACTGTACTTACTTTTCTCTGTTCCTTTTAATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAATGGAAGTATACTGTACTTACTTTTCTCTGTTCCTTTTAATTT  333

seq1  GTGAGGATATAGTAGCTTTGTCTTTTGTGCAAATAGGATGAGAAAATAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGATATAGTAGCTTTGTCTTTTGTGCAAATAGGATGAGAAAATAAT  383

seq1  ACCAGTGTAGAAGTGACCTTTGCCAGACCACAAAAATGAGTGATACTTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGTAGAAGTGACCTTTGCCAGACCACAAAAATGAGTGATACTTTA  433

seq1  ATCTTTGACTCCCCTGTCTCTAGGCTTGTAAGAAACCTATTTTAATAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGACTCCCCTGTCTCTAGGCTTGTAAGAAACCTATTTTAATAAAA  483

seq1  TGCCAAATCTGTAGAGTTTTATTTTTATGCCAATAGGAATGGACTCAGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAATCTGTAGAGTTTTATTTTTATGCCAATAGGAATGGACTCAGAA  533

seq1  AAAAAATAGTACTTAGGATTCAGAAAGCTCAGAATCTAAAGTTAAAAGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAGTACTTAGGATTCAGAAAGCTCAGAATCTAAAGTTAAAAGAT  583

seq1  TTAACTACCTGCCCCTTGAGGCATTGCAGGTATGGCTGCTGTGTCACATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTACCTGCCCCTTGAGGCATTGCAGGTATGGCTGCTGTGTCACATG  633

seq1  TGTGTCAATAGGTGGCCACAGAGAAGAGTTTATGTCTGTGCTCAGTGTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAATAGGTGGCCACAGAGAAGAGTTTATGTCTGTGCTCAGTGTTC  683

seq1  TGACCTATGAAAATCTGAATTTGTAGCCTAACATTCCCTAAAAAAAAAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTATGAAAATCTGAATTTGTAGCCTAACATTCCCTAAAAAAAAAGT  733

seq1  GAGCCTTAAATGAACACCAATCTGGTATGAGACAGGGTCTGATGGTCTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTAAATGAACACCAATCTGGTATGAGACAGGGTCTGATGGTCTCC  783

seq1  CAGGACAGGAAGCAAGCCTAAGACTATAAGAATTCTACAATCAGAGTGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGGAAGCAAGCCTAAGACTATAAGAATTCTACAATCAGAGTGCC  833

seq1  CCACCACCATTTGAGTGAGCCCAAAACAGATGAACCTCACCAGTAACCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCATTTGAGTGAGCCCAAAACAGATGAACCTCACCAGTAACCAC  883

seq1  TATGGTGGTTAGCAACAGAACAGTGTCTCTGAGTTTAAGACAGGGAGCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGGTTAGCAACAGAACAGTGTCTCTGAGTTTAAGACAGGGAGCTA  933

seq1  ACCTGGGAAGACTATCAGTCTAGTTTAGCACAGGTGTCAGGGAGCAGACC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGAAGACTATCAGTCTAGTTTAGCACAGGTGTCAGGGAGCAGACC  983

seq1  ATACCCAAGATGCCTTCTGCCTAGTGTTATAATGCACAAGCAGGACATAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAAGATGCCTTCTGCCTAGTGTTATAATGCACAAGCAGGACATAG  1033

seq1  CAGTCTTGAGACCATTCCTGATATAACTCCAGGCAGTCAGAGAATTC  1096
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTGAGACCATTCCTGATATAACTCCAGGCAGTCAGAGAATTC  1080