BAC Information

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BAC

Clone NameB6Ng01-109K12
ChromosomeX (Build37)
Map Location 145,492,101 - 145,626,481
singlet/doubletdoublet
Overlap geneOtt
Upstream geneLOC100039511, LOC666812, LOC100039519, LOC434864, EG624096, LOC100039545, LOC666837, LOC100039553, LOC100034729, LOC666861, EG666864, LOC434866, EG666868, EG624260, LOC434865, EG624310
Downstream geneLOC666888, LOC100039598, LOC100039890, LOC100039612, EG666923, EG624378, LOC100039934, LOC100039629, LOC382243, EG666961, EG666968, OTTMUSG00000018988, LOC100039651, EG624568, LOC382244, LOC100039669, EG666982, EG624631
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109K12.bB6Ng01-109K12.g
ACCDH916506DH916507
length7471,129
definitionDH916506|Mus musculus domesticus DNA, BAC clone: B6Ng01-109K12, 5' end.DH916507|Mus musculus domesticus DNA, BAC clone: B6Ng01-109K12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,492,101 - 145,492,847)(145,625,354 - 145,626,481)
sequence
gaattcttttgtgattgggttacctcactcaggatgatgccctccaagtc
tatccatttgcctaggaatttcataaattcattctttttaacagctgagt
aatactcttgtcactgagcctctacaacagtgcaggatgcacagtgatta
gagggcgcctttttggaattattgagagcctcaggctggtctggggaaga
cacacctcagcaagtggatctctgtgctttgaagtggctgggagttgcac
aggaggtggcaacatgatggcaatccttgaaggtaaccagtactctctat
tttgagagtagaggcacgacccctctccatgctcagggttcccactggtc
agaaaaggatgttgactgggagacctctacataacccaggcggctcaaaa
tggcacctggaggtgtggagatgtccagagagggctcgggctctgtctct
cctgtcttcttcattctaggaggagcttttagcctttctggtgcagtgct
cctctaccccatcaacccttctattctggaagggaaactttaaacatcct
ggtgatcgatggttattggaattgtccacagtaaaatggccctaatttcg
agtgaggtcaaggggcttgctgagttcccacctccaggatcacatagctg
tagcctaaggatagccttctaggaatctgggaattagaatgctggaagga
tataccacacaatttttttagttggtgggggtggctgggagggtgtg
gaattcctgatgaacaagagtcagaggtaacagtgagcatatacatggag
gtagacaaacctaacagcacaactacacacacatgtgcacctgttcgcat
actaacagaagcacacagagatgtagccacatcttcatcatcatgcacac
acacacaagagattctggcagagaagaaaagaaaaagtccagagaattac
tttttctttgagtgcttgactagattgaacaaagcactgaatttgatacc
cagggcagcatctgatccagaaagattgtgccagtcttgaattaggggca
tcctattcttcatgacccaagggatgatgacctgtagtgagacattgttt
aaaaatgatactatggtaactaaaaaatttaaaattttacttcaggcaca
tggcttttcagagaagatttcctgctgtttgtcagactctagccagacct
tgttttctcatgcctctcctggttctgtattctataatctgaatcctcta
taccttttcttttctaatcattgtttttgttttagtagaaagggtctctg
tgtatgatagctcagtctggtctcacatttacaaccatgtacttgcctct
gcctcaccactgctaagattcaagtcatgtgttaccatgccctacaactt
ctccccatttctttcactcctgtgttttcctgtttccagctcctggtcta
actctattcttaattctgtgcttccagtcacttactcccttctcaccagt
gtgcagaccctcctgttcctgcagcctatgtaacttgttaaacattttat
cccatatttcacattcatactcccacagacagactcacacagacacaaac
acacccaaatacacagtcgcacacattcacagaaacatacacacacagaa
tacagagacactcagacacacacacactcacacacacacacacacacaca
cacacacacacagaggcacaacagatacacacacagacacacacagacac
acacagacaacacgacaaccactttcgcttttctttgtggcccttgttaa
tgctaacaatgtgcctcttatggattgccagggatagttcaaaggagtga
aaaaacaaaaaatgatttgtgcagggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_145492101_145492847
seq2: B6Ng01-109K12.b_50_796

seq1  GAATTCTTTTGTGATTGGGTTACCTCACTCAGGATGATGCCCTCCAAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGTGATTGGGTTACCTCACTCAGGATGATGCCCTCCAAGTC  50

seq1  TATCCATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAACAGCTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAACAGCTGAGT  100

seq1  AATACTCTTGTCACTGAGCCTCTACAACAGTGCAGGATGCACAGTGATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCTTGTCACTGAGCCTCTACAACAGTGCAGGATGCACAGTGATTA  150

seq1  GAGGGCGCCTTTTTGGAATTATTGAGAGCCTCAGGCTGGTCTGGGGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCGCCTTTTTGGAATTATTGAGAGCCTCAGGCTGGTCTGGGGAAGA  200

seq1  CACACCTCAGCAAGTGGATCTCTGTGCTTTGAAGTGGCTGGGAGTTGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTCAGCAAGTGGATCTCTGTGCTTTGAAGTGGCTGGGAGTTGCAC  250

seq1  AGGAGGTGGCAACATGATGGCAATCCTTGAAGGTAACCAGTACTCTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTGGCAACATGATGGCAATCCTTGAAGGTAACCAGTACTCTCTAT  300

seq1  TTTGAGAGTAGAGGCACGACCCCTCTCCATGCTCAGGGTTCCCACTGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAGTAGAGGCACGACCCCTCTCCATGCTCAGGGTTCCCACTGGTC  350

seq1  AGAAAAGGATGTTGACTGGGAGACCTCTACATAACCCAGGCGGCTCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGATGTTGACTGGGAGACCTCTACATAACCCAGGCGGCTCAAAA  400

seq1  TGGCACCTGGAGGTGTGGAGATGTCCAGAGAGGGCTCGGGCTCTGTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCTGGAGGTGTGGAGATGTCCAGAGAGGGCTCGGGCTCTGTCTCT  450

seq1  CCTGTCTTCTTCATTCTAGGAGGAGCTTTTAGCCTTTCTGGTGCAGTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTCTTCATTCTAGGAGGAGCTTTTAGCCTTTCTGGTGCAGTGCT  500

seq1  CCTCTACCCCATCAACCCTTCTATTCTGGAAGGGAAACTTTAAACATCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACCCCATCAACCCTTCTATTCTGGAAGGGAAACTTTAAACATCCT  550

seq1  GGTGATCGATGGTTATTGGAATTGTCCACAGTAAAATGGCCCTAATTTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATCGATGGTTATTGGAATTGTCCACAGTAAAATGGCCCTAATTTCG  600

seq1  AGTGAGGTCAAGGGGCTTGCTGAGTTCCCACCTCCAGGATCACATAGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGTCAAGGGGCTTGCTGAGTTCCCACCTCCAGGATCACATAGCTG  650

seq1  TAGCCTAAGGATAGCCTTCTAGGAATCTGGGAATTAGAATGCTGGAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTAAGGATAGCCTTCTAGGAATCTGGGAATTAGAATGCTGGAAGGA  700

seq1  TATACCACACAATTTTTTTAGTTGGTGGGGGTGGCTGGGAGGGTGTG  747
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCACACAATTTTTTTAGTTGGTGGGGGTGGCTGGGAGGGTGTG  747

seq1: chrX_145625354_145626481
seq2: B6Ng01-109K12.g_68_1196 (reverse)

seq1  TCTCCCTGCAC-AATCATTTCT--GTCTTTCACTCC-TTGAACATTCCCT  46
      ||||||||||| |||||||| |   | ||||||||| ||||||  |||||
seq2  TCTCCCTGCACAAATCATTTTTTGTTTTTTCACTCCTTTGAACTATCCCT  50

seq1  GGCAATCCACTAAGCAGCACATTGTTAGCATTAACAAGGGCCACAAAGAA  96
      ||||||||| ||||  ||||||||||||||||||||||||||||||||||
seq2  GGCAATCCA-TAAGAGGCACATTGTTAGCATTAACAAGGGCCACAAAGAA  99

seq1  AAGCGAAAGTGGTTGTGCGTGTGTGTCTGTGTGTGTCTGTGTGTGTCTGT  146
      |||||||||||||||| ||||| |||||||||||||||||||||||||||
seq2  AAGCGAAAGTGGTTGT-CGTGT-TGTCTGTGTGTGTCTGTGTGTGTCTGT  147

seq1  GTGTGTATCTGTGTGTGCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  196
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATCTGT-TGTGCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  196

seq1  GTGTGTGTGTGTGTGTGTCTGAGTGTCTCTGTATTCTGTGTGTGTATGTT  246
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGTGTGTGTGTGTCTGAGTGTCTCTGTATTCTGTGTGTGTATGTT  246

seq1  TCTGTGAATGTGTGCGACTGTGTATTTGGGTGTGTTTGTGTCTGTGTGAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAATGTGTGCGACTGTGTATTTGGGTGTGTTTGTGTCTGTGTGAG  296

seq1  TCTGTCTGTGGGAGTATGAATGTG-AATATGGGATAAAATGTTTAACAAG  345
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTGTCTGTGGGAGTATGAATGTGAAATATGGGATAAAATGTTTAACAAG  346

seq1  TTACATAGGCTGCAGGAACAGGAGGGTCTGCACACTGGTGAGAAGGGAGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAGGCTGCAGGAACAGGAGGGTCTGCACACTGGTGAGAAGGGAGT  396

seq1  AAGTGACTGGAAGCACAGAATTAAGAATAGAGTTAGACCAGGAGCTGGAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTGGAAGCACAGAATTAAGAATAGAGTTAGACCAGGAGCTGGAA  446

seq1  ACAGGAAAACACAGGAGTGAAAGAAATGGGGAGAAGTTGTAGGGCATGGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAACACAGGAGTGAAAGAAATGGGGAGAAGTTGTAGGGCATGGT  496

seq1  AACACATGACTTGAATCTTAGCAGTGGTGAGGCAGAGGCAAGTACATGGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGACTTGAATCTTAGCAGTGGTGAGGCAGAGGCAAGTACATGGT  546

seq1  TGTAAATGTGAGACCAGACTGAGCTATCATACACAGAGACCCTTTCTACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGTGAGACCAGACTGAGCTATCATACACAGAGACCCTTTCTACT  596

seq1  AAAACAAAAACAATGATTAGAAAAGAAAAGGTATAGAGGATTCAGATTAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAACAATGATTAGAAAAGAAAAGGTATAGAGGATTCAGATTAT  646

seq1  AGAATACAGAACCAGGAGAGGCATGAGAAAACAAGGTCTGGCTAGAGTCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACAGAACCAGGAGAGGCATGAGAAAACAAGGTCTGGCTAGAGTCT  696

seq1  GACAAACAGCAGGAAATCTTCTCTGAAAAGCCATGTGCCTGAAGTAAAAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACAGCAGGAAATCTTCTCTGAAAAGCCATGTGCCTGAAGTAAAAT  746

seq1  TTTAAATTTTTTAGTTACCATAGTATCATTTTTAAACAATGTCTCACTAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTTTTTAGTTACCATAGTATCATTTTTAAACAATGTCTCACTAC  796

seq1  AGGTCATCATCCCTTGGGTCATGAAGAATAGGATGCCCCTAATTCAAGAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATCATCCCTTGGGTCATGAAGAATAGGATGCCCCTAATTCAAGAC  846

seq1  TGGCACAATCTTTCTGGATCAGATGCTGCCCTGGGTATCAAATTCAGTGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAATCTTTCTGGATCAGATGCTGCCCTGGGTATCAAATTCAGTGC  896

seq1  TTTGTTCAATCTAGTCAAGCACTCAAAGAAAAAGTAATTCTCTGGACTTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCAATCTAGTCAAGCACTCAAAGAAAAAGTAATTCTCTGGACTTT  946

seq1  TTCTTTTCTTCTCTGCCAGAATCTCTTGTGTGTGTGTGCATGATGATGAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTTCTCTGCCAGAATCTCTTGTGTGTGTGTGCATGATGATGAA  996

seq1  GATGTGGCTACATCTCTGTGTGCTTCTGTTAGTATGCGAACAGGTGCACA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGCTACATCTCTGTGTGCTTCTGTTAGTATGCGAACAGGTGCACA  1046

seq1  TGTGTGTGTAGTTGTGCTGTTAGGTTTGTCTACCTCCATGTATATGCTCA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTAGTTGTGCTGTTAGGTTTGTCTACCTCCATGTATATGCTCA  1096

seq1  CTGTTACCTCTGACTCTTGTTCATCAGGAATTC  1128
      |||||||||||||||||||||||||||||||||
seq2  CTGTTACCTCTGACTCTTGTTCATCAGGAATTC  1129