BAC Information

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BAC

Clone NameB6Ng01-109L12
ChromosomeX (Build37)X (Build37)
Map Location 148,897,861 - 148,898,771149,067,501 - 149,068,114
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneORF34, LOC100039760, Phf8, LOC385448, LOC237116, Huwe1, LOC675514, Hsd17b10, Ribc1, Smc1a, LOC100040394, Iqsec2, Jarid1c, 2900056M20Rik, Tspyl2, Gpr173, LOC207318
Downstream geneEG667113, EG635412, LOC635396, EG667130, Shroom2, Gpr143, LOC100039874, LOC667147, EG624124, Usp51, LOC635253, Mageh1, EG385454, EG436240, Rragb, Klf8, LOC100039932, EG635136
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109L12.bB6Ng01-109L12.g
ACCDH916550DH916551
length910616
definitionDH916550|Mus musculus domesticus DNA, BAC clone: B6Ng01-109L12, 5' end.DH916551|Mus musculus domesticus DNA, BAC clone: B6Ng01-109L12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(148,897,861 - 148,898,771)(149,067,501 - 149,068,114)
sequence
gaattcagtagccctctggatggtgaaagtgtgtagtctttgttggagtg
gaaaacagcttttggaaagacatggaataaagagtaaagctaatacaatt
gtgatgtttgggcctgccaaggggaaggattcatggtccccaagtagtca
aatttccttccaaaaagcattgtctgtcctttttctgtttttaaattttt
ttctaataattatttagcattttcccatactatgccagattggttcacct
gaaaatagcattctttccctaggaaggcacagatgcctctttttcagcag
tcattgcatccagtcctctgaggtcttggagagatactgcagccagagaa
tatgtttgatttagtagggtgactatactttattgtaccaaggtcatgtc
tcccttaacctgattggctgcattctacctgttggaggcctatgggtgtt
gtgccagtggctgttgtagggtgaaagccactggggagagtttacatgga
accatttccttgggtatatggggaagttcaataattaaaacatttaaaag
acagggagaaatgtgagtatcaagataataaggaggaaaggagtgatcag
gggagacgccatagtggaaatgaactaaagggaaaaggcttgtgattaag
ttttccctggctcctgtgtcttttggccctatctcaaaccaattaggatt
tattggtgtagaagcagcatctttcatggagaaaggcgtatcttagctgt
agttagatctagtcattgagtactgcaacagccaaagaatccaactggtc
gtgaagtatgttgtgatgagtactcttgattatcatcttgactacacctg
aaatgaattacaatcctggaatggagggcacaactgtgagaggtattttg
ggggggggtg
gaattccaccattcaggagatagaagcaggagaatcagaagtccagggct
gtctttggctatatagttagctcaagatcagcttgagacacatgagatcc
tacctcaagagaagtagggagggaggggacaggtggagagaaggatgaag
agagagaaagaatatgtatatgagaatgccaggaaaggagacagaagagt
ttatgtagtggagggtgtaatgaggttttaaaaacaaagtttcctggcct
ctttaaatgtgaggcaatgttgctacacctaagtggagctccacagattt
catttcaaagagatatcctggcccagggctcagaaagttgttctgactct
tggaatatgggtagattccccctagacctagtgccagggaactttcagtg
tcaccatttttatagataatgattattttttttggaagggacattccgag
ccaagaataaaaatgcctggaatatagcttttgatacccacatacatgta
ataggtagaaaagtgggagagaaggaatttgggaagggaagtttttgcaa
aacagattcttaatgttttcttcacatccaaatttgcttggaaggctggt
tttgaaatagatttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_148897861_148898771
seq2: B6Ng01-109L12.b_51_960 (reverse)

seq1  CACCCCCCCCCAAAATAACCTCTCACAGTTGTGCCCTCCATTCCAGGATT  50
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CACCCCCCCCCAAAAT-ACCTCTCACAGTTGTGCCCTCCATTCCAGGATT  49

seq1  GTAATTCATTTCAGGTGTAGTCAAGATGATAATCAAGAGTACTCATCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCATTTCAGGTGTAGTCAAGATGATAATCAAGAGTACTCATCACA  99

seq1  ACATACTTCACGACCAGTTGGATTCTTTGGCTGTTGCAGTACTCAATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTTCACGACCAGTTGGATTCTTTGGCTGTTGCAGTACTCAATGAC  149

seq1  TAGATCTAACTACAGCTAAGATACGCCTTTCTCCATGAAAGATGCTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTAACTACAGCTAAGATACGCCTTTCTCCATGAAAGATGCTGCTT  199

seq1  CTACACCAATAAATCCTAATTGGTTTGAGATAGGGCCAAAAGACACAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACCAATAAATCCTAATTGGTTTGAGATAGGGCCAAAAGACACAGGA  249

seq1  GCCAGGGAAAACTTAATCACAAGCCTTTTCCCTTTAGTTCATTTCCACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGAAAACTTAATCACAAGCCTTTTCCCTTTAGTTCATTTCCACTA  299

seq1  TGGCGTCTCCCCTGATCACTCCTTTCCTCCTTATTATCTTGATACTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTCTCCCCTGATCACTCCTTTCCTCCTTATTATCTTGATACTCACA  349

seq1  TTTCTCCCTGTCTTTTAAATGTTTTAATTATTGAACTTCCCCATATACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCTGTCTTTTAAATGTTTTAATTATTGAACTTCCCCATATACCC  399

seq1  AAGGAAATGGTTCCATGTAAACTCTCCCCAGTGGCTTTCACCCTACAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATGGTTCCATGTAAACTCTCCCCAGTGGCTTTCACCCTACAACA  449

seq1  GCCACTGGCACAACACCCATAGGCCTCCAACAGGTAGAATGCAGCCAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGGCACAACACCCATAGGCCTCCAACAGGTAGAATGCAGCCAATC  499

seq1  AGGTTAAGGGAGACATGACCTTGGTACAATAAAGTATAGTCACCCTACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAGGGAGACATGACCTTGGTACAATAAAGTATAGTCACCCTACTA  549

seq1  AATCAAACATATTCTCTGGCTGCAGTATCTCTCCAAGACCTCAGAGGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACATATTCTCTGGCTGCAGTATCTCTCCAAGACCTCAGAGGACT  599

seq1  GGATGCAATGACTGCTGAAAAAGAGGCATCTGTGCCTTCCTAGGGAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCAATGACTGCTGAAAAAGAGGCATCTGTGCCTTCCTAGGGAAAGA  649

seq1  ATGCTATTTTCAGGTGAACCAATCTGGCATAGTATGGGAAAATGCTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATTTTCAGGTGAACCAATCTGGCATAGTATGGGAAAATGCTAAAT  699

seq1  AATTATTAGAAAAAAATTTAAAAACAGAAAAAGGACAGACAATGCTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTAGAAAAAAATTTAAAAACAGAAAAAGGACAGACAATGCTTTTT  749

seq1  GGAAGGAAATTTGACTACTTGGGGACCATGAATCCTTCCCCTTGGCAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAATTTGACTACTTGGGGACCATGAATCCTTCCCCTTGGCAGGC  799

seq1  CCAAACATCACAATTGTATTAGCTTTACTCTTTATTCCATGTCTTTCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACATCACAATTGTATTAGCTTTACTCTTTATTCCATGTCTTTCCAA  849

seq1  AAGCTGTTTTCCACTCCAACAAAGACTACACACTTTCACCATCCAGAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTTTTCCACTCCAACAAAGACTACACACTTTCACCATCCAGAGGG  899

seq1  CTACTGAATTC  911
      |||||||||||
seq2  CTACTGAATTC  910

seq1: chrX_149067501_149068114
seq2: B6Ng01-109L12.g_67_682 (reverse)

seq1  CTAAATCTATTTCAAAACCAGCCTTCCAAGC-AATTTGGATGTGAAGAAA  49
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTAAATCTATTTCAAAACCAGCCTTCCAAGCAAATTTGGATGTGAAGAAA  50

seq1  ACATTAAGAATCTGTTTTGC-AAAACTTCCCTTCCCAAATTCCTTCTCTC  98
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACATTAAGAATCTGTTTTGCAAAAACTTCCCTTCCCAAATTCCTTCTCTC  100

seq1  CCACTTTTCTACCTATTACATGTATGTGGGTATCAAAAGCTATATTCCAG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTTCTACCTATTACATGTATGTGGGTATCAAAAGCTATATTCCAG  150

seq1  GCATTTTTATTCTTGGCTCGGAATGTCCCTTCCAAAAAAAATAATCATTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTTATTCTTGGCTCGGAATGTCCCTTCCAAAAAAAATAATCATTA  200

seq1  TCTATAAAAATGGTGACACTGAAAGTTCCCTGGCACTAGGTCTAGGGGGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAAAATGGTGACACTGAAAGTTCCCTGGCACTAGGTCTAGGGGGA  250

seq1  ATCTACCCATATTCCAAGAGTCAGAACAACTTTCTGAGCCCTGGGCCAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCCATATTCCAAGAGTCAGAACAACTTTCTGAGCCCTGGGCCAGG  300

seq1  ATATCTCTTTGAAATGAAATCTGTGGAGCTCCACTTAGGTGTAGCAACAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCTTTGAAATGAAATCTGTGGAGCTCCACTTAGGTGTAGCAACAT  350

seq1  TGCCTCACATTTAAAGAGGCCAGGAAACTTTGTTTTTAAAACCTCATTAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCACATTTAAAGAGGCCAGGAAACTTTGTTTTTAAAACCTCATTAC  400

seq1  ACCCTCCACTACATAAACTCTTCTGTCTCCTTTCCTGGCATTCTCATATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCACTACATAAACTCTTCTGTCTCCTTTCCTGGCATTCTCATATA  450

seq1  CATATTCTTTCTCTCTCTTCATCCTTCTCTCCACCTGTCCCCTCCCTCCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCTTTCTCTCTCTTCATCCTTCTCTCCACCTGTCCCCTCCCTCCC  500

seq1  TACTTCTCTTGAGGTAGGATCTCATGTGTCTCAAGCTGATCTTGAGCTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTCTTGAGGTAGGATCTCATGTGTCTCAAGCTGATCTTGAGCTAA  550

seq1  CTATATAGCCAAAGACAGCCCTGGACTTCTGATTCTCCTGCTTCTATCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAGCCAAAGACAGCCCTGGACTTCTGATTCTCCTGCTTCTATCTC  600

seq1  CTGAATGGTGGAATTC  614
      ||||||||||||||||
seq2  CTGAATGGTGGAATTC  616