BAC Information

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BAC

Clone NameB6Ng01-110B08
ChromosomeX (Build37)
Map Location 49,453,946 - 49,611,301
singlet/doubletdoublet
Overlap geneGpc4
Upstream geneMbnl3, LOC665866, LOC385356, Hs6st2, Usp26, LOC100040479, LOC665888, 1700080O16Rik, LOC100040495
Downstream geneGpc3, Kis2, LOC100041925, LOC665929, 6330534C20Rik, LOC624936, LOC546298, LOC100040569, Phf6, Hprt1, C430049B03Rik, Plac1, 4632404H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110B08.bB6Ng01-110B08.g
ACCDH916809DH916810
length1,1241,156
definitionDH916809|Mus musculus domesticus DNA, BAC clone: B6Ng01-110B08, 5' end.DH916810|Mus musculus domesticus DNA, BAC clone: B6Ng01-110B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,610,198 - 49,611,301)(49,453,946 - 49,455,115)
sequence
gaattcctacaaagaagctaagtctgaggaggttgattaaaactgtggag
agtttggcatatcacagaccaataggctaattgctatgtatcctgggcaa
ccctgacccctaaggagccatcatttgtccacctctatgccagatctaac
atcccataaacgggtaaacactttcggaatgtagtaacaaaagctgatcc
tccacctatcaaagagcagaaaatattaccagctactatcagtggcctat
ggttgagattcttccacttgactgtaacctctctctatattgtttccaac
atttgtattttaaaaatgccttgacttgtgacttctttgttctgttacca
taaaaactccataaaactgcttccatttcggaacaattgaacttggtgta
atttaaatctatgttctcaggccatggccactcaaatttagatccaaaat
aaactatctcttattccaccccccgaaaaagtctctaggctagtgttgat
caataggaatatggtacatgtcagagcatgttttaaatgttctagtaacc
acttttttaaaggaaataatgtcagatatggttgagcgtgcctttaatca
cagcacttgggaggcagtggcaggaagattgttgtaatttcatggccaac
ctggactgtatagtataatcctgtcacaaaaataataggaaaatgagaaa
agggaggagaaagagaacaaggagaaagaaaaagtgaaaatacatttaat
aaacatatttaatataaacatatttaaaatgctactttaacttgtaatga
ataataatattaattgaatattttctagggtaagatttcgtactaagtac
ttgaatcagggcctgtcagttatgaatagctcatatcaatttggactagc
catacttgaagtactcatgtaccacacatggacaatgacatctgaagctg
acagtgtagtccaagactaatacaaaacacacacaagtaattggatgatt
tggccaccctacattcttgctagtcatgtagaagcacctggctacagcca
ttgaaaaatcttcagagggaaagatgtcatactctcaatgttctatcaga
tctcagctttggatggggttgttt
gaattcttttgtgtccacttcacatctcaactcagaaactctggaaccac
agatatttattactgcacccagcactatctgaatatctgcatgtcaaatg
gtttgcccagttgagtcaatctcatctatcttgcacacttataaccacta
cctctaggactcaatgctagggacagcaatcaacactcaaaacaataata
tgaaagagcaatactagaatttcaccaaacctctccaataactctcaaga
ctccaacagatatgttctcaacagtggtactaaaagttatcaaaggaaac
atgttggggccctgaggggtaactaggggcagtaaagaaagacttttttc
ctgacactgattccctgagacaaggatacatactttgttggttctgagaa
tctcattcaaatcctagttgatttataatatttatctggactcattgaac
agaaagtctgatgatatccaattccaaattcatctatggatttcagaatc
ttacagtgatctgaaagagccccatgtgatcttgaaatccctgaggaagt
atgcataaagaggctctaaggatgttgttacaaatgcttatgaaattaag
cttctcacaactttctccgagtctgtttctcttctgaactttttctcctt
tatcctccatcccaatcttcaaggtttccttctgtagaggatgagtcaaa
gacaacgaagaaaacagatactcccaaggttgctcgaatctgttctagcc
tcaacaacaaacacaaagtggcctaaagaggaaacacccctggctatgac
ttttttctttgttgctcaatagtgtatctcaactgtcatctccaagccac
gagtcacggttacaaaaacaacagagacacgggccttatcaatcatacca
gactaaggccttggtaggtccatttctgaaagtgacagatagagggctag
ctcaagtgtcaggtagttctcagtcagagaagtctggccatagcattata
actttctcgcacctagcagattttcttgtacatcacagatgaccccagga
agcaaaggagagataggcctcaggcaaacatgccgatattcccttctctc
cacacgaagctgactaccaccataacctcctgagaaataccaggatacct
gtctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_49610198_49611301
seq2: B6Ng01-110B08.b_71_1172 (reverse)

seq1  AAACA---CCATCAAAAGCTGAGATTCTGATAGACATTTGAGAAGTATGA  47
      |||||   ||||| |||||||||| |||||||||   ||||| |||||||
seq2  AAACAACCCCATCCAAAGCTGAGA-TCTGATAGAACATTGAG-AGTATGA  48

seq1  CATCTTTCCCCTCTTGAGATTTTTCAATGGCTGTAGGCCAGGTTGGCTTC  97
      ||||||| ||||||  ||||||||||||||||||| |||||||  |||||
seq2  CATCTTT-CCCTCTGAAGATTTTTCAATGGCTGTA-GCCAGGT--GCTTC  94

seq1  TACATGACTAGCAAGAATGTAGGGTGGCCAAATCATCCAATTACTTGTGT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGACTAGCAAGAATGTAGGGTGGCCAAATCATCCAATTACTTGTGT  144

seq1  GTGTTTTGTATTAGTCTTGGACTACACTGTCAGCTTCAGATGTCATTGTC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTGTATTAGTCTTGGACTACACTGTCAGCTTCAGATGTCATTGTC  194

seq1  CATGTGTGGTACATGAGTACTTCAAGTATGGCTAGTCCAAATTGATATGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGGTACATGAGTACTTCAAGTATGGCTAGTCCAAATTGATATGA  244

seq1  GCTATTCATTAACTGACAGG-CCTGATTCAAGTACTTAGTACGAAATCTT  296
      |||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  GCTATTCA-TAACTGACAGGCCCTGATTCAAGTACTTAGTACGAAATCTT  293

seq1  A-CCTAGAAAATATTCAATTAATATTATTATTCATTACAAGTTAAAGTAG  345
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGAAAATATTCAATTAATATTATTATTCATTACAAGTTAAAGTAG  343

seq1  CATTTTAAATATGTTTATATTAAATATGTTTATTAAATGTATTTTCACTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAATATGTTTATATTAAATATGTTTATTAAATGTATTTTCACTT  393

seq1  TTTCTTTCTCCTTGTTCTCTTTCTCCTCCCTTTTCTCATTTTCCTATTAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTCCTTGTTCTCTTTCTCCTCCCTTTTCTCATTTTCCTATTAT  443

seq1  TTTTGTGACAGGATTATACTATACAGTCCAGGTTGGCCATGAAATTACAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGACAGGATTATACTATACAGTCCAGGTTGGCCATGAAATTACAA  493

seq1  CAATCTTCCTGCCACTGCCTCCCAAGTGCTGTGATTAAAGGCACGCTCAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTCCTGCCACTGCCTCCCAAGTGCTGTGATTAAAGGCACGCTCAA  543

seq1  CCATATCTGACATTATTTCCTTTAAAAAAGTGGTTACTAGAACATTTAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCTGACATTATTTCCTTTAAAAAAGTGGTTACTAGAACATTTAAA  593

seq1  ACATGCTCTGACATGTACCATATTCCTATTGATCAACACTAGCCTAGAGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTCTGACATGTACCATATTCCTATTGATCAACACTAGCCTAGAGA  643

seq1  CTTTTTCGGGGGGTGGAATAAGAGATAGTTTATTTTGGATCTAAATTTGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCGGGGGGTGGAATAAGAGATAGTTTATTTTGGATCTAAATTTGA  693

seq1  GTGGCCATGGCCTGAGAACATAGATTTAAATTACACCAAGTTCAATTGTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCATGGCCTGAGAACATAGATTTAAATTACACCAAGTTCAATTGTT  743

seq1  CCGAAATGGAAGCAGTTTTATGGAGTTTTTATGGTAACAGAACAAAGAAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAATGGAAGCAGTTTTATGGAGTTTTTATGGTAACAGAACAAAGAAG  793

seq1  TCACAAGTCAAGGCATTTTTAAAATACAAATGTTGGAAACAATATAGAGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGTCAAGGCATTTTTAAAATACAAATGTTGGAAACAATATAGAGA  843

seq1  GAGGTTACAGTCAAGTGGAAGAATCTCAACCATAGGCCACTGATAGTAGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTACAGTCAAGTGGAAGAATCTCAACCATAGGCCACTGATAGTAGC  893

seq1  TGGTAATATTTTCTGCTCTTTGATAGGTGGAGGATCAGCTTTTGTTACTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATATTTTCTGCTCTTTGATAGGTGGAGGATCAGCTTTTGTTACTA  943

seq1  CATTCCGAAAGTGTTTACCCGTTTATGGGATGTTAGATCTGGCATAGAGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCGAAAGTGTTTACCCGTTTATGGGATGTTAGATCTGGCATAGAGG  993

seq1  TGGACAAATGATGGCTCCTTAGGGGTCAGGGTTGCCCAGGATACATAGCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAATGATGGCTCCTTAGGGGTCAGGGTTGCCCAGGATACATAGCA  1043

seq1  ATTAGCCTATTGGTCTGTGATATGCCAAACTCTCCACAGTTTTAATCAAC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCTATTGGTCTGTGATATGCCAAACTCTCCACAGTTTTAATCAAC  1093

seq1  CTCCTCAGA  1104
      |||||||||
seq2  CTCCTCAGA  1102

seq1: chrX_49453946_49455115
seq2: B6Ng01-110B08.g_67_1222

seq1  GAATTCTTTTGTGTCCACTTCACATCTCAACTCAGAAACTCTGGAACCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGTGTCCACTTCACATCTCAACTCAGAAACTCTGGAACCAC  50

seq1  AGATATTTATTACTGCACCCAGCACTATCTGAATATCTGCATGTCAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTATTACTGCACCCAGCACTATCTGAATATCTGCATGTCAAATG  100

seq1  GTTTGCCCAGTTGAGTCAATCTCATCTATCTTGCACACTTATAACCACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCCAGTTGAGTCAATCTCATCTATCTTGCACACTTATAACCACTA  150

seq1  CCTCTAGGACTCAATGCTAGGGACAGCAATCAACACTCAAAACAATAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGGACTCAATGCTAGGGACAGCAATCAACACTCAAAACAATAATA  200

seq1  TGAAAGAGCAATACTAGAATTTCACCAAACCTCTCCAATAACTCTCAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGCAATACTAGAATTTCACCAAACCTCTCCAATAACTCTCAAGA  250

seq1  CTCCAACAGATATGTTCTCAACAGTGGTACTAAAAGTTATCAAAGGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACAGATATGTTCTCAACAGTGGTACTAAAAGTTATCAAAGGAAAC  300

seq1  ATGTTGGGGCCCTGAGGGGTAACTAGGGGCAGTAAAGAAAGACTTTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGGGCCCTGAGGGGTAACTAGGGGCAGTAAAGAAAGACTTTTTTC  350

seq1  CTGACACTGATTCCCTGAGACAAGGATACATACTTTGTTGGTTCTGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACTGATTCCCTGAGACAAGGATACATACTTTGTTGGTTCTGAGAA  400

seq1  TCTCATTCAAATCCTAGTTGATTTATAATATTTATCTGGACTCATTGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTCAAATCCTAGTTGATTTATAATATTTATCTGGACTCATTGAAC  450

seq1  AGAAAGTCTGATGATATCCAATTCCAAATTCATCTATGGATTTCAGAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTCTGATGATATCCAATTCCAAATTCATCTATGGATTTCAGAATC  500

seq1  TTACAGTGATCTGAAAGAGCCCCATGTGATCTTGAAATCCCTGAGGAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTGATCTGAAAGAGCCCCATGTGATCTTGAAATCCCTGAGGAAGT  550

seq1  ATGCATAAAGAGGCTCTAAGGATGTTGTTACAAATGCTTATGAAATTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATAAAGAGGCTCTAAGGATGTTGTTACAAATGCTTATGAAATTAAG  600

seq1  CTTCTCACAACTTTCTCCGAGTCTGTTTCTCTTCTGAACTTTTTCTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCACAACTTTCTCCGAGTCTGTTTCTCTTCTGAACTTTTTCTCCTT  650

seq1  TATCCTCCATCCCAATCTTCAAGGTTTCCTTCTGTAGAGGATGAGTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCCATCCCAATCTTCAAGGTTTCCTTCTGTAGAGGATGAGTCAAA  700

seq1  GACAACGAAGAAAACAGATACTCCCAAGGTTGCTCGAATCTGTTCTAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACGAAGAAAACAGATACTCCCAAGGTTGCTCGAATCTGTTCTAGCC  750

seq1  TCAACAACAAACACAAAGTGGCCTAAAGAGGAAACACCCCTGGCTATGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAACAAACACAAAGTGGCCTAAAGAGGAAACACCCCTGGCTATGAC  800

seq1  TTTTTTCTTTGTTGCTCAATAGTGTATCTCAACTGTCATCTCCAAGCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTGTTGCTCAATAGTGTATCTCAACTGTCATCTCCAAGCCAC  850

seq1  GAGTCACGGTTACAAAAACAACAGAGACACGGGCCTTATCAATCATACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACGGTTACAAAAACAACAGAGACACGGGCCTTATCAATCATACCA  900

seq1  GACTAAGGCCTTGGTAGGTCCATTTCTGAAAGGTGACAGATAGAGGGCTA  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  GACTAAGGCCTTGGTAGGTCCATTTCTGAAA-GTGACAGATAGAGGGCT-  948

seq1  AGCTCAAAGTGTCAAGGAAGTTCCTCAAGTCAGAGAAGTCTGGCCATTAG  1000
      ||||| ||||||| ||| |||| ||| ||||||||||||||||||| |||
seq2  AGCTC-AAGTGTC-AGGTAGTT-CTC-AGTCAGAGAAGTCTGGCCA-TAG  993

seq1  CAATATAACCTTTCTCGGCACCTAGCAGA-TCTCTTGTACAATCACAGAT  1049
      || ||||| ||||||| |||||||||||| | |||||||| |||||||||
seq2  CATTATAA-CTTTCTC-GCACCTAGCAGATTTTCTTGTAC-ATCACAGAT  1040

seq1  GACCCCAGGGAAAGCAAAAGGAAGAGATA-GCCTCAGGCAAACATGGCAG  1098
      |||||||||  |||||||  | ||||||| ||||||||||||||| || |
seq2  GACCCCAGG--AAGCAAA--GGAGAGATAGGCCTCAGGCAAACAT-GCCG  1085

seq1  ATA-TCCCTTCCCTCCACACAGAAGGCTGACTACCA-CATAACCTCTCTG  1146
      ||| ||||||| |||||||| ||| ||||||||||| ||||||||| |||
seq2  ATATTCCCTTCTCTCCACAC-GAA-GCTGACTACCACCATAACCTC-CTG  1132

seq1  AG-AATGACAGAGTACACTGTCTGG  1170
      || |||  |||  ||| ||||||||
seq2  AGAAATACCAGGATAC-CTGTCTGG  1156