BAC Information

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BAC

Clone NameB6Ng01-110L15
ChromosomeX (Build37)
Map Location 165,707,608 - 165,859,015
singlet/doubletdoublet
Overlap geneArhgap6, Hccs, LOC100040950, BC022960
Upstream geneFrmpd4, EG667822, EG637566, Msl31, Amelx
Downstream geneMid1, 4933400A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110L15.bB6Ng01-110L15.g
ACCDH917268DH917269
length4701,117
definitionDH917268|Mus musculus domesticus DNA, BAC clone: B6Ng01-110L15, 5' end.DH917269|Mus musculus domesticus DNA, BAC clone: B6Ng01-110L15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,707,608 - 165,708,083)(165,857,891 - 165,859,015)
sequence
catgacagcccaggttattgtttaagactctatgtcagcaaagattataa
tagtagtactcaaacttcactgttgtgtagaatttgcaaggaatcttgtt
agacattcatattcctaggctactttttagaagatagaattaaatatcac
agggcccaggaatcagtactttctaatgaatcccttcaggagagattcct
atcatgcctagggaaaccacatattgggaaatacagattgggtggaaaga
ccatgacctttggggttagttatcaaaattcagattgcctccaagctctc
tctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatataa
cctctgaccctataattaacttctctaagccttcatctcctgtaaaaaaa
aattagattaaagggcttactttgcatgacttttttgaaggacatgtcat
ttagaaaaggtatgtatcac
gaattcaatggtatgtgataagcttaattgggtagttttaatatttgcta
taatttcaggtgaacaaaagggagactgactttgctattattgttaaatg
attacacagtttggtttatattccctgccatagtccatcaaaaagtcagt
gtgaagtaaacaggtgccatgggtacaagttgtaaactcaaataattgac
tccactggcttaaaggtccagatgtggacctccgaggtacaccaggaatg
agaaatgtgttagatttaaaaaaaaaatcattgagagagccatttagaca
gatactctagaggtgaaagctagaatgatgaaactaaggatcctagtagt
aactcaatttggaagactcaacttctctcctagtacttgagttttaagtt
ctatcttaagatcacacattttcactttatatctactcaagtacctgact
tttggtcaacggtcaacagaaaaagacctgtctacctaaccgacaccctc
tctatcatgcctttccttctcagctctgtcagtttcttctaacagatgaa
tttttccttccagaagttttccaggacagatttggttttacttcctgttg
gtctatttatgctttattctccatttttctcctcaaacttctaaattatt
tatgcttttatagacatttcactacttgtcctgcttcaaactttgaccaa
cttgttgagaatgtttcaaatttataaattccttgtacacacataatccc
actttcccacaaaatgacacactacgtttcccttttgctagttgacttaa
cccaaaaataccaacccaacctatatcacttaagatggcctatgctcaaa
aacttaatatttcttctgatattttcttttcattcaccatcatacagagt
ctagtgctgtacagttggtctctccaggacttctaatatatgtgccattt
tatccagtctttccagatgacttctttctttttcttgcaccaacctcatg
cccagaacatataatccaagagaaatacagaccaaggggctaggagtcta
gatgacatgttagtctatgaaggatttttcatatgaatgtttcaatgcac
aaactaagaattatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_165707608_165708083
seq2: B6Ng01-110L15.b_46_521

seq1  GAATTCCATGACAGCCCAGGTTATTGTTTAAGACTCTATGTCAGCAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGACAGCCCAGGTTATTGTTTAAGACTCTATGTCAGCAAAGA  50

seq1  TTATAATAGTAGTACTCAAACTTCACTGTTGTGTAGAATTTGCAAGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATAGTAGTACTCAAACTTCACTGTTGTGTAGAATTTGCAAGGAAT  100

seq1  CTTGTTAGACATTCATATTCCTAGGCTACTTTTTAGAAGATAGAATTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTAGACATTCATATTCCTAGGCTACTTTTTAGAAGATAGAATTAAA  150

seq1  TATCACAGGGCCCAGGAATCAGTACTTTCTAATGAATCCCTTCAGGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAGGGCCCAGGAATCAGTACTTTCTAATGAATCCCTTCAGGAGAG  200

seq1  ATTCCTATCATGCCTAGGGAAACCACATATTGGGAAATACAGATTGGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTATCATGCCTAGGGAAACCACATATTGGGAAATACAGATTGGGTG  250

seq1  GAAAGACCATGACCTTTGGGGTTAGTTATCAAAATTCAGATTGCCTCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACCATGACCTTTGGGGTTAGTTATCAAAATTCAGATTGCCTCCAA  300

seq1  GCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA  350

seq1  ATATAACCTCTGACCCTATAATTAACTTCTCTAAGCCTTCATCTCCTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACCTCTGACCCTATAATTAACTTCTCTAAGCCTTCATCTCCTGTA  400

seq1  AAAAAAAATTAGATTAAAGGGCTTACTTTGCATGACTTTTTTGAAGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATTAGATTAAAGGGCTTACTTTGCATGACTTTTTTGAAGGACA  450

seq1  TGTCATTTAGAAAAGGTATGTATCAC  476
      ||||||||||||||||||||||||||
seq2  TGTCATTTAGAAAAGGTATGTATCAC  476

seq1: chrX_165857891_165859015
seq2: B6Ng01-110L15.g_68_1184 (reverse)

seq1  TCCATATTTTCTTAGTTTGTGCCATATGGAACATTCATATGAATAATCCT  50
      ||||||  ||||||||||||| ||| || |||||||||||||| ||||| 
seq2  TCCATA-ATTCTTAGTTTGTG-CAT-TGAAACATTCATATGAAAAATCC-  46

seq1  TTCATGAACTAACATTGTCATCTGACCTCCTAGCCCCCTTGGTCTGTATT  100
      |||||  ||||||| ||||||||   ||||||| ||||||||||||||||
seq2  TTCATAGACTAACA-TGTCATCTAGACTCCTAG-CCCCTTGGTCTGTATT  94

seq1  TCTCTTGGGATATATTTGTTCTGGGCATGAGGTTTGGTGGCAAGAAAAAG  150
      ||||||||  ||||  |||||||||||||||| ||||| |||||||||||
seq2  TCTCTTGGATTATA--TGTTCTGGGCATGAGG-TTGGT-GCAAGAAAAAG  140

seq1  AAAG-AGTCAATCTGGAAAGACTGGAT-AAATGGCACATATA-TAGAAGT  197
      |||| |||| ||||||||||||||||| |||||||||||||| |||||||
seq2  AAAGAAGTC-ATCTGGAAAGACTGGATAAAATGGCACATATATTAGAAGT  189

seq1  CCTGGAGAGACCAACTGTACAGCACTTAGACTCTGTATGATGGTGAATGA  247
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCTGGAGAGACCAACTGTACAGCAC-TAGACTCTGTATGATGGTGAATGA  238

seq1  AAAGAAAATATCAGAAGAAATATTAAGTTTTTGAGCATAGG-CATCTTAA  296
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAGAAAATATCAGAAGAAATATTAAGTTTTTGAGCATAGGCCATCTTAA  288

seq1  GTGATATAGGTTGGGTTGGTATTTTTGGGTTAAGTCAACTAGCAAAAGGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATAGGTTGGGTTGGTATTTTTGGGTTAAGTCAACTAGCAAAAGGG  338

seq1  AAACGTAGTGTGTCATTTTGTGGGAAAGTGGGATTATGTGTGTACAAGGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTAGTGTGTCATTTTGTGGGAAAGTGGGATTATGTGTGTACAAGGA  388

seq1  ATTTATAAATTTGAAACATTCTCAACAAGTTGGTCAAAGTTTGAAGCAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAAATTTGAAACATTCTCAACAAGTTGGTCAAAGTTTGAAGCAGG  438

seq1  ACAAGTAGTGAAATGTCTATAAAAGCATAAATAATTTAGAAGTTTGAGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAGTGAAATGTCTATAAAAGCATAAATAATTTAGAAGTTTGAGGA  488

seq1  GAAAAATGGAGAATAAAGCATAAATAGACCAACAGGAAGTAAAACCAAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGGAGAATAAAGCATAAATAGACCAACAGGAAGTAAAACCAAAT  538

seq1  CTGTCCTGGAAAACTTCTGGAAGGAAAAATTCATCTGTTAGAAGAAACTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGGAAAACTTCTGGAAGGAAAAATTCATCTGTTAGAAGAAACTG  588

seq1  ACAGAGCTGAGAAGGAAAGGCATGATAGAGAGGGTGTCGGTTAGGTAGAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCTGAGAAGGAAAGGCATGATAGAGAGGGTGTCGGTTAGGTAGAC  638

seq1  AGGTCTTTTTCTGTTGACCGTTGACCAAAAGTCAGGTACTTGAGTAGATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTTTTCTGTTGACCGTTGACCAAAAGTCAGGTACTTGAGTAGATA  688

seq1  TAAAGTGAAAATGTGTGATCTTAAGATAGAACTTAAAACTCAAGTACTAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGAAAATGTGTGATCTTAAGATAGAACTTAAAACTCAAGTACTAG  738

seq1  GAGAGAAGTTGAGTCTTCCAAATTGAGTTACTACTAGGATCCTTAGTTTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAGTTGAGTCTTCCAAATTGAGTTACTACTAGGATCCTTAGTTTC  788

seq1  ATCATTCTAGCTTTCACCTCTAGAGTATCTGTCTAAATGGCTCTCTCAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCTAGCTTTCACCTCTAGAGTATCTGTCTAAATGGCTCTCTCAAT  838

seq1  GATTTTTTTTTTAAATCTAACACATTTCTCATTCCTGGTGTACCTCGGAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTTTTTAAATCTAACACATTTCTCATTCCTGGTGTACCTCGGAG  888

seq1  GTCCACATCTGGACCTTTAAGCCAGTGGAGTCAATTATTTGAGTTTACAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACATCTGGACCTTTAAGCCAGTGGAGTCAATTATTTGAGTTTACAA  938

seq1  CTTGTACCCATGGCACCTGTTTACTTCACACTGACTTTTTGATGGACTAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACCCATGGCACCTGTTTACTTCACACTGACTTTTTGATGGACTAT  988

seq1  GGCAGGGAATATAAACCAAACTGTGTAATCATTTAACAATAATAGCAAAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGAATATAAACCAAACTGTGTAATCATTTAACAATAATAGCAAAG  1038

seq1  TCAGTCTCCCTTTTGTTCACCTGAAATTATAGCAAATATTAAAACTACCC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTCCCTTTTGTTCACCTGAAATTATAGCAAATATTAAAACTACCC  1088

seq1  AATTAAGCTTATCACATACCATTGAATTC  1125
      |||||||||||||||||||||||||||||
seq2  AATTAAGCTTATCACATACCATTGAATTC  1117