BAC Information

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BAC

Clone NameB6Ng01-110N22
ChromosomeX (Build37)Y (Build37)
Map Location 16,773,111 - 16,774,124573,467 - 573,510
singlet/doubletsingletsinglet
Overlap geneEfhc2
Upstream geneLOC100043949, LOC100043950, Cypt6, LOC100038939, LOC668993, Maoa, Maob, Ndph, LOC100043063
Downstream geneFundc1, EG278181, EG668994, EG436196, EG331391, Dusp21, LOC100043951, Utx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110N22.bB6Ng01-110N22.g
ACCDH917373DH917374
length1,005968
definitionDH917373|Mus musculus domesticus DNA, BAC clone: B6Ng01-110N22, 5' end.DH917374|Mus musculus domesticus DNA, BAC clone: B6Ng01-110N22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(16,773,111 - 16,774,124)(573,467 - 573,510)
sequence
gaattcataaatgttagttaagtgagtgcctttgacctagccgtgactac
tctgtttctgacaaagaggtgtttcagttgaaatctttgtattcattcct
caagtttattgctctcttgaagtatagagacctggaaataagagtgtctt
tgaactctttccctattggatgttcctaaggcatcccgaataacctttct
taaaatgacatcattttatattttaagtttcattcattcattcattcatt
cattcatgtgtgtgtgtgtctctgtgtgtgagtttatgtgtaccacatgc
atgcaggtgcctataaaagccagaagagggcatatggtcctctaaaacta
tagttaagtgtcattgtaggctagtctgtgggtactgggaactgaactca
ggtcttctacaagagcagtgtgcaatcttgaccattcagccatctctaca
actctttgatcttgttttcttctcccattgaattgcacttgaggactata
ttctggtaaaggtcatatatgttgtaggaccaggcgagagatctgccttg
tgtctttccctcatctttggaattgtactcttcactcctctagaaaagat
cccttctttccatctgaaatctcatttttgctgttaagctttcagtcact
gtcatgaattttagagaacagggtaagtggtcttcatttaaaattttcat
cctccaaagttttccccaagtgatcctcttaaaatctgactaggtttttt
tttttcctttttctaaagcctatattaacttcctattgtctctaagacaa
atcttatgcagttgtattatttgagtttggtcacagtctgttccttgctt
accttttttttttaattaaggcattttttaattagatattttcttcattt
acatttcaaatgtatccccaggcccctataccctcccccaccctgctccc
acccactactcccacatctggcctggcattccctgtactggggcatatga
tcttc
gaattctcacctgaggaatactgaatggctgagaagctcctgaaaaaatg
ttgaacatctttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtttaagatcaaaaattcaggtgacagc
agatgctgatgaggatgtggagaaagaggaacactctttcgttgttggtg
ggattgcaagcttgtacaaccactctggaaatcagcctagcggttcctca
gaaaactggacatagtacttccagaggatccagcaatacctctcctgggc
atgtatccagaagatgttccaaccagtaagaaggacacatgctccactat
gttcatagcaggcttatttgtaatagccagaagctggaaagaaccctgat
gcccctcagagagaggccccttggtcttgcaaattttatatgcctcagta
cagctattaaaaacaatgaatttatgaaattcctaggcaaatggatggaa
ctggagggcgtcatcctgattgtgataacccaatcacaaaagaacttgga
taatatgtactcactgataagtggatattagcccagaaatttagaatacc
caagatataagatacaatttgctaaacacatgaaactcaagaagtacaaa
caccaaagtgtggacactttgtcccttcttagaattgggaacaaaacacc
catggaagaagttacagagacaaggtttggagctgagacgaaaagatgga
ccatatagaaactgccatatctggggatccatcccataatcagcttccaa
acgctgacaccattgcatacactagtaagattttgctaaaaggacccaga
tatggctgtcttttgtgagactatgccagggcctgacaaatagagagtgg
atgctcacagtcagctcttggatggatcacaggcttccactggagagcta
agaaagtactcagagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_16773111_16774124
seq2: B6Ng01-110N22.b_44_1048 (reverse)

seq1  GAAGATCATATGCCCCAGTACAGGGGAATGCCAGGGCCAGGATGTGGGAG  50
      |||||||||||||||||||||| |||||||||| ||||| ||||||||||
seq2  GAAGATCATATGCCCCAGTACA-GGGAATGCCA-GGCCA-GATGTGGGAG  47

seq1  TAGGTGGGTTGGGGAGCAGGGTGGGGGGAGGGTATAGGGGGCCTTGGGGA  100
      || ||||||  ||||||||||| |||||||||||||||||  | ||||||
seq2  TA-GTGGGT--GGGAGCAGGGT-GGGGGAGGGTATAGGGG--CCTGGGGA  91

seq1  TAACATTTGAAATGTAAATGAAGAAAATATCTAATTAAAAAATGCCTTAA  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-ACATTTGAAATGTAAATGAAGAAAATATCTAATTAAAAAATGCCTTAA  140

seq1  TTAAAAAAAAAAGGTAAGCAAGGAACAGACTGTGACCAAACTCAAATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAGGTAAGCAAGGAACAGACTGTGACCAAACTCAAATAAT  190

seq1  ACAACTGCATAAGATTTGTCTTAGAGACAATAGGAAGTTAATATAGGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGCATAAGATTTGTCTTAGAGACAATAGGAAGTTAATATAGGCTT  240

seq1  TAGAAAAAGG-AAAAAAAAAACCTAGTCAGATTTTAAGAGGATCACTTGG  299
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAAGGAAAAAAAAAAACCTAGTCAGATTTTAAGAGGATCACTTGG  290

seq1  GGAAAACTTTGGAGGATGAAAATTTTAAATGAAGACCACTTACCCTGTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACTTTGGAGGATGAAAATTTTAAATGAAGACCACTTACCCTGTTC  340

seq1  TCTAAAATTCATGACAGTGACTGAAAGCTTAACAGCAAAAATGAGATTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATTCATGACAGTGACTGAAAGCTTAACAGCAAAAATGAGATTTC  390

seq1  AGATGGAAAGAAGGGATCTTTTCTAGAGGAGTGAAGAGTACAATTCCAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAAAGAAGGGATCTTTTCTAGAGGAGTGAAGAGTACAATTCCAAA  440

seq1  GATGAGGGAAAGACACAAGGCAGATCTCTCGCCTGGTCCTACAACATATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGGAAAGACACAAGGCAGATCTCTCGCCTGGTCCTACAACATATA  490

seq1  TGACCTTTACCAGAATATAGTCCTCAAGTGCAATTCAATGGGAGAAGAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTTACCAGAATATAGTCCTCAAGTGCAATTCAATGGGAGAAGAAA  540

seq1  ACAAGATCAAAGAGTTGTAGAGATGGCTGAATGGTCAAGATTGCACACTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATCAAAGAGTTGTAGAGATGGCTGAATGGTCAAGATTGCACACTG  590

seq1  CTCTTGTAGAAGACCTGAGTTCAGTTCCCAGTACCCACAGACTAGCCTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTAGAAGACCTGAGTTCAGTTCCCAGTACCCACAGACTAGCCTAC  640

seq1  AATGACACTTAACTATAGTTTTAGAGGACCATATGCCCTCTTCTGGCTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACACTTAACTATAGTTTTAGAGGACCATATGCCCTCTTCTGGCTTT  690

seq1  TATAGGCACCTGCATGCATGTGGTACACATAAACTCACACACAGAGACAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCACCTGCATGCATGTGGTACACATAAACTCACACACAGAGACAC  740

seq1  ACACACACATGAATGAATGAATGAATGAATGAATGAAACTTAAAATATAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATGAATGAATGAATGAATGAATGAATGAAACTTAAAATATAA  790

seq1  AATGATGTCATTTTAAGAAAGGTTATTCGGGATGCCTTAGGAACATCCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGTCATTTTAAGAAAGGTTATTCGGGATGCCTTAGGAACATCCAA  840

seq1  TAGGGAAAGAGTTCAAAGACACTCTTATTTCCAGGTCTCTATACTTCAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAAGAGTTCAAAGACACTCTTATTTCCAGGTCTCTATACTTCAAG  890

seq1  AGAGCAATAAACTTGAGGAATGAATACAAAGATTTCAACTGAAACACCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAATAAACTTGAGGAATGAATACAAAGATTTCAACTGAAACACCTC  940

seq1  TTTGTCAGAAACAGAGTAGTCACGGCTAGGTCAAAGGCACTCACTTAACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAGAAACAGAGTAGTCACGGCTAGGTCAAAGGCACTCACTTAACT  990

seq1  AACATTTATGAATTC  1014
      |||||||||||||||
seq2  AACATTTATGAATTC  1005

seq1: chrY_573467_573510
seq2: B6Ng01-110N22.g_475_518

seq1  AGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAG  44
      |||||||||||||||||||||||| |||||||||| ||||||||
seq2  AGAGAGGCCCCTTGGTCTTGCAAATTTTATATGCCTCAGTACAG  44