BAC Information

Click to search

BAC

Clone NameB6Ng01-111A09
ChromosomeX (Build37)
Map Location 101,587,906 - 101,589,015
singlet/doubletsinglet
Overlap genenone
Upstream geneTsx, Tsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2, EG621381, EG668426, LOC668430, Rnf12, C77370, Vcp-ps, EG621542
Downstream geneUprt, Zdhhc15, Magee2, LOC622098, LOC676331, 5530601H04Rik, 2610029G23Rik, Magee1, LOC622159, LOC668454, E530001F21Rik, LOC622202, LOC100043213
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111A09.bB6Ng01-111A09.g
ACCDH917481DH917482
length1,0951,132
definitionDH917481|Mus musculus domesticus DNA, BAC clone: B6Ng01-111A09, 5' end.DH917482|Mus musculus domesticus DNA, BAC clone: B6Ng01-111A09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttcaagtttgacattgctcttaggcttaccatagttttgtaat
aaaatacaactctagagtagattttgtggagattgtagtgtgtcatatgg
ttgaactaccatggttatttatattatgaaaatttctcaagcattccact
tatattccatttaattagtgacagaactataacccaggacttttaaactt
aaattgtattttatatgtatgtgtatgaatgtgttggagtgcatttacct
atgcatgtgcatggagaccagaaaacagtgactgttaacctctgccactt
gccttgtttgttctttgagacagggtctctcattgaacttggagataggc
tgtaagacagcaagcccagtgatcatcctgtttctgttaacatactgcag
ggattaccgggtcataacatgaccacactcagcttttttcatatgtgttc
tagggatttgaagacctaagactagtacaggtgtcttacttgctgagtca
tcttagtcccaaaccaggtcttttgacttatttatttctccttatcctga
aagctcaatgattgacagctcctactgatggagtatactgtcttatttat
tgtatatgatcctttgtatacccgttgtctatttcctggatgaaaaatta
gtttatagctatttgaataaacctgttgtaaaactgtctttgttctatac
tagtagcttagtatattgaaatgcatacaaaggtagcaaaatcattctaa
actaggttttatccggacctaacccagctccatatttaaaaaggaccatg
tcactattatcttaagctattttatgagtactgggaaacaaattaaaatt
ttaaacaaatttgttacgcacttgtcatttgatagacataactagtcact
gaggctacagcaatgaatgaatcataacctgcccttcacaaatcagattt
tgagggaaaacagtctagtaataacattcaataaaatgtacagtattttt
taagtgctgtttgtagatttaggggacccagaaataagagaacatattta
gtttgaaaagatagaaagagcttctagatgataattgtgatgaat
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggtccatgtagagacttccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagctatgccggggcctagcaacac
agagtgatgctcacagtcagctatggatgatcacaggctcccatgagagc
tagagaagtagccagagctaaagggatctgcaccctatagcgacacatat
gactaccagtaccggagctctgactctagctgcatatgtatcaagatgct
agtcgcattactggaaagagtcattggacctgctaccttattgccagtac
agacgcagcaaaagggagtggttggtagtgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_101587906_101589015
seq2: B6Ng01-111A09.b_49_1143 (reverse)

seq1  ATTCATCTACAAATTTATCATCTAGAAGCTCTTCTCTATCTTCTCTAAAC  50
      ||||||| ||||  ||||||||||||||||||| |||||||| || ||||
seq2  ATTCATC-ACAA--TTATCATCTAGAAGCTCTT-TCTATCTTTTC-AAAC  45

seq1  TAAATATGTTTCTC-TATTTCTGGGTTCCCCTAAAATCTTACACACAGCA  99
      |||||||| ||||| |||||||||| |||||| ||||| |||| ||||||
seq2  TAAATATG-TTCTCTTATTTCTGGG-TCCCCT-AAATC-TACAAACAGCA  91

seq1  CTTTAAAAATACTTGTTACATTTTATTTGAATTGTTATTTACTAGACTGT  149
      ||| |||||||||   ||||||||| ||||| ||||| ||||||||||||
seq2  CTTAAAAAATACT--GTACATTTTA-TTGAA-TGTTA-TTACTAGACTGT  136

seq1  TTTCCCTCAAAATCTTGATTTGTTGAAGGGCAGGTTATGATTCATTCATT  199
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  TTTCCCTCAAAATC-TGATTTG-TGAAGGGCAGGTTATGATTCATTCATT  184

seq1  GCTGTAGCCTCAGTGACTAGTTATGTCTATCAAATGACAAGTGCCTAACA  249
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCTGTAGCCTCAGTGACTAGTTATGTCTATCAAATGACAAGTGCGTAACA  234

seq1  AATTTGTTTAAAATTTTAATTTGTTTCCCAGTACTCATAAAATAGCTTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTTTAAAATTTTAATTTGTTTCCCAGTACTCATAAAATAGCTTAA  284

seq1  GATAATAGTGACATGGTCCTTTTTAAATATGGAGCTGGGTTAGGTCCGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATAGTGACATGGTCCTTTTTAAATATGGAGCTGGGTTAGGTCCGGA  334

seq1  TAAAACCTAGTTTAGAATGATTTTGCTACCTTTGTATGCATTTCAATATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCTAGTTTAGAATGATTTTGCTACCTTTGTATGCATTTCAATATA  384

seq1  CTAAGCTACTAGTATAGAACAAAGACAGTTTTACAACAGGTTTATTCAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTACTAGTATAGAACAAAGACAGTTTTACAACAGGTTTATTCAAA  434

seq1  TAGCTATAAACTAATTTTTCATCCAGGAAATAGACAACGGGTATACAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATAAACTAATTTTTCATCCAGGAAATAGACAACGGGTATACAAAG  484

seq1  GATCATATACAATAAATAAGACAGTATACTCCATCAGTAGGAGCTGTCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATATACAATAAATAAGACAGTATACTCCATCAGTAGGAGCTGTCAA  534

seq1  TCATTGAGCTTTCAGGATAAGGAGAAATAAATAAGTCAAAAGACCTGGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAGCTTTCAGGATAAGGAGAAATAAATAAGTCAAAAGACCTGGTT  584

seq1  TGGGACTAAGATGACTCAGCAAGTAAGACACCTGTACTAGTCTTAGGTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTAAGATGACTCAGCAAGTAAGACACCTGTACTAGTCTTAGGTCT  634

seq1  TCAAATCCCTAGAACACATATGAAAAAAGCTGAGTGTGGTCATGTTATGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCCCTAGAACACATATGAAAAAAGCTGAGTGTGGTCATGTTATGA  684

seq1  CCCGGTAATCCCTGCAGTATGTTAACAGAAACAGGATGATCACTGGGCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGTAATCCCTGCAGTATGTTAACAGAAACAGGATGATCACTGGGCTT  734

seq1  GCTGTCTTACAGCCTATCTCCAAGTTCAATGAGAGACCCTGTCTCAAAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTTACAGCCTATCTCCAAGTTCAATGAGAGACCCTGTCTCAAAGA  784

seq1  ACAAACAAGGCAAGTGGCAGAGGTTAACAGTCACTGTTTTCTGGTCTCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAGGCAAGTGGCAGAGGTTAACAGTCACTGTTTTCTGGTCTCCA  834

seq1  TGCACATGCATAGGTAAATGCACTCCAACACATTCATACACATACATATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATGCATAGGTAAATGCACTCCAACACATTCATACACATACATATA  884

seq1  AAATACAATTTAAGTTTAAAAGTCCTGGGTTATAGTTCTGTCACTAATTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAATTTAAGTTTAAAAGTCCTGGGTTATAGTTCTGTCACTAATTA  934

seq1  AATGGAATATAAGTGGAATGCTTGAGAAATTTTCATAATATAAATAACCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAATATAAGTGGAATGCTTGAGAAATTTTCATAATATAAATAACCA  984

seq1  TGGTAGTTCAACCATATGACACACTACAATCTCCACAAAATCTACTCTAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTTCAACCATATGACACACTACAATCTCCACAAAATCTACTCTAG  1034

seq1  AGTTGTATTTTATTACAAAACTATGGTAAGCCTAAGAGCAATGTCAAACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTATTTTATTACAAAACTATGGTAAGCCTAAGAGCAATGTCAAACT  1084

seq1  TGAAAGAATTC  1110
      |||||||||||
seq2  TGAAAGAATTC  1095