BAC Information

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BAC

Clone NameB6Ng01-115D14
ChromosomeX (Build37)
Map Location 146,905,811 - 147,036,579
singlet/doubletdoublet
Overlap geneAlas2, Apex2, Pfkfb1
Upstream geneLOC100039934, LOC100039629, LOC382243, EG666961, EG666968, OTTMUSG00000018988, LOC100039651, EG624568, LOC382244, LOC100039669, EG666982, EG624631, EG546387, LOC333588, Tmem29, LOC100040101
Downstream geneTro, LOC100039716, Maged2, Itih5l, LOC667021, Gnl3l, Fgd1, Tsr2, LOC100040221, EG667027, Wnk3, LOC675278, ORF34, LOC623804, LOC100039760, Phf8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115D14.bB6Ng01-115D14.g
ACCDH920544DH920545
length9411,180
definitionDH920544|Mus musculus domesticus DNA, BAC clone: B6Ng01-115D14, 5' end.DH920545|Mus musculus domesticus DNA, BAC clone: B6Ng01-115D14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,035,636 - 147,036,579)(146,905,811 - 146,906,552)
sequence
gaattcaatgaaacccagaaatggacatgtgtaaatgacagtccttgaat
aaagagtgtagtttagacaagagaaatggaaataagatggcatatatgag
tgaaaataccactaagaatccaataacttgtataaaatacatataatttt
taatagaagaaataggaaggagaactaacgtttagagataatgggtttga
gggtgggtagttactagagattgaacttcgcaagtgctccatcactgagc
tatagcccagcctctactgggtttttatttactctatatctttggttctt
tagcaaaggaatcaacatcaaaggtatctcagaagtagaagtgtcccaga
aggggagcttacagggatcaaaaccctgtgggatgagaactttctggaat
ttgaaacagtgtcaacaggacccaaccagccttcataggagcttttcttc
tgtgttcttctacactgattctagaagaggaacaatcattacagtgagta
gtttctgaacagaggacagaaaatgatagccagagacactggaaaacaca
agaagaaaaaaagaagaagaagaagaagaagaaagcatttccttatgact
tgctaatgctttgatcctaattagtataccaactttggaaactcaactac
ctttaagacttctgcatgctcacagtcagctattggatggatcacagggc
ccccaatggaggagctagagaaagtagccaaggagctaaagggatctgca
accctataggtggaacaacattatgaactaaccagtaccccagagctctt
gactctagctgcttatgtatcaaaagatggcctagtcggccattagtgga
aagagaggcccattggacatgcaaactttatatgtcccagtacagggaac
gccagggccaaaagtgggaatggtgggtaggggagtggggg
gaattcctgatttgattcaaatagttttaagatgaaagttttaagagatg
ggcttagtcgctttgctacaaagatgtaacaaagatagaatcaagaatag
aatgtgcacacttctcatatagtaagtaaaggctgcataataagaaatac
aaagagctttcataattacactaaaaagagaaataggcttgggacaaatt
tgtgttaaaggaaaagcattcaggtccaaggaagaagccacaggtgtgca
ctatgataaggcacagccatgtgaaactattgctttgaacttacaacaag
cttgcagaaggacacactgctttgaccttaatatcaacttccttctgtaa
ctcccattttatataacattttatctctgaggtaatttcctaaagaactt
tttttatctcgaatttaaatgaccagagaaaggaaagttatcagttaaat
tgtttggcttggcgagctctgccccatcaattcatccatccatccatcca
tccacccacccaaatgtgtatgtttgtcagtacataagtatgtaggtatg
tgtgtgcatgtaagcatgcatgaatacttgtagagtgtatgagacaggcg
gttgggcccaacaaaaatgtgaatgtgttaatgtgcaaatgagaatctaa
atatatgtatgaatgtatatgtgtctgtgcatatctgcctgtataatgca
tcttaattcttatcccttccctcctctctggttcacaaagagttaaccag
cctagtcagggaggcttctgtctatctggacagagaagtgagtgataaca
atacatttttatttggttccccactgtgagacaacaagtgttgcacatcc
aagccagtagtttttaaccacaaaacaagcaagaacatttttaggatttc
tttagaagttatcagcaagcattcagtatagagagcgagaaggccagaga
ccatcagtcttttcagactacctctatgtggtattgccagagccagacct
ctgcctctagtctggtcttctgtttgtttgtttgttcctagctcaggaaa
ttacagatactacatcatattaagcatctcaaagaagcctgccaggaagt
ctactgctcagtctgatgttatggctagaactgtgtgttatagcatacga
gtatgctgaacagagattcagggttccaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_147035636_147036579
seq2: B6Ng01-115D14.b_45_985 (reverse)

seq1  CCCCCACTCCCCTACCCACCCATTCCCACTTTTTGGCCCTGGCGTTCCCC  50
      |||||||||||||||||| |||||||||| |||||||||||||||| |||
seq2  CCCCCACTCCCCTACCCA-CCATTCCCAC-TTTTGGCCCTGGCGTT-CCC  47

seq1  TGTACTGGGACATATAAAGTTTGCATGTCCAATGGGCCTCTCTTTCCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGGGACATATAAAGTTTGCATGTCCAATGGGCCTCTCTTTCCACT  97

seq1  AATGGCCGACTAGGCCATCTTTTGATACATAAGCAGCTAGAGTCAAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCGACTAGGCCATCTTTTGATACATAAGCAGCTAGAGTCAAGAGC  147

seq1  TCTGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGA  197

seq1  TCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGGGCCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGGGCCCTG  247

seq1  TGATCCATCCAATAGCTGACTGTGAGCATGCAGAAGTCTTAAAGGTAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCATCCAATAGCTGACTGTGAGCATGCAGAAGTCTTAAAGGTAGTT  297

seq1  GAGTTTCCAAAGTTGGTATACTAATTAGGATCAAAGCATTAGCAAGTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCCAAAGTTGGTATACTAATTAGGATCAAAGCATTAGCAAGTCAT  347

seq1  AAGGAAATGCTTTCTTCTTCTTCTTCTTCTTCTTTTTTTCTTCTTGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATGCTTTCTTCTTCTTCTTCTTCTTCTTTTTTTCTTCTTGTGTT  397

seq1  TTCCAGTGTCTCTGGCTATCATTTTCTGTCCTCTGTTCAGAAACTACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTGTCTCTGGCTATCATTTTCTGTCCTCTGTTCAGAAACTACTCA  447

seq1  CTGTAATGATTGTTCCTCTTCTAGAATCAGTGTAGAAGAACACAGAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATGATTGTTCCTCTTCTAGAATCAGTGTAGAAGAACACAGAAGAA  497

seq1  AAGCTCCTATGAAGGCTGGTTGGGTCCTGTTGACACTGTTTCAAATTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCTATGAAGGCTGGTTGGGTCCTGTTGACACTGTTTCAAATTCCA  547

seq1  GAAAGTTCTCATCCCACAGGGTTTTGATCCCTGTAAGCTCCCCTTCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTCTCATCCCACAGGGTTTTGATCCCTGTAAGCTCCCCTTCTGGG  597

seq1  ACACTTCTACTTCTGAGATACCTTTGATGTTGATTCCTTTGCTAAAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCTACTTCTGAGATACCTTTGATGTTGATTCCTTTGCTAAAGAAC  647

seq1  CAAAGATATAGAGTAAATAAAAACCCAGTAGAGGCTGGGCTATAGCTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATATAGAGTAAATAAAAACCCAGTAGAGGCTGGGCTATAGCTCAG  697

seq1  TGATGGAGCACTTGCGAAGTTCAATCTCTAGTAACTACCCACCCTCAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAGCACTTGCGAAGTTCAATCTCTAGTAACTACCCACCCTCAAAC  747

seq1  CCATTATCTCTAAACGTTAGTTCTCCTTCCTATTTCTTCTATTAAAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATCTCTAAACGTTAGTTCTCCTTCCTATTTCTTCTATTAAAAATT  797

seq1  ATATGTATTTTATACAAGTTATTGGATTCTTAGTGGTATTTTCACTCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATTTTATACAAGTTATTGGATTCTTAGTGGTATTTTCACTCATA  847

seq1  TATGCCATCTTATTTCCATTTCTCTTGTCTAAACTACACTCTTTATTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCATCTTATTTCCATTTCTCTTGTCTAAACTACACTCTTTATTCAA  897

seq1  GGACTGTCATTTACACATGTCCATTTCTGGGTTTCATTGAATTC  944
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTCATTTACACATGTCCATTTCTGGGTTTCATTGAATTC  941

seq1: chrX_146905811_146906552
seq2: B6Ng01-115D14.g_533_1246

seq1  CTCTGCCCCATCAATTCATCCATCCATCCATCCATCCACCCACCCAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCCCATCAATTCATCCATCCATCCATCCATCCACCCACCCAAATG  50

seq1  TGTATGTTTGTCAGTACATAAGTATGTAGGTATGTGTGTGCATGTAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTTTGTCAGTACATAAGTATGTAGGTATGTGTGTGCATGTAAGCA  100

seq1  TGCATGAATACTTGTAGAGTGTATGAGACAGGCGGTTGGGCCCAACAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGAATACTTGTAGAGTGTATGAGACAGGCGGTTGGGCCCAACAAAA  150

seq1  ATGTGAATGTGTTAATGTGCAAATGAGAATCTAAATATATGTATGAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATGTGTTAATGTGCAAATGAGAATCTAAATATATGTATGAATGT  200

seq1  ATATGTGTCTGTGCATATCTGCCTGTATAATGCATCTTAATTCTTATCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTCTGTGCATATCTGCCTGTATAATGCATCTTAATTCTTATCCC  250

seq1  TTCCCTCCTCTCTGGTTCACAAAGAGTTAACCAGCCTAGTCAGGGAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCTCTCTGGTTCACAAAGAGTTAACCAGCCTAGTCAGGGAGGCT  300

seq1  TCTGTCTATCTGGACAGAGAAGTGAGTGATAACAATACATTTTTATTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTATCTGGACAGAGAAGTGAGTGATAACAATACATTTTTATTTGG  350

seq1  TTCCCCACTGTGAGACAACAAGTGTTGCACATCCAAGCCAGTAGTTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCACTGTGAGACAACAAGTGTTGCACATCCAAGCCAGTAGTTTTTA  400

seq1  ACCACAAAACAAGCAAGAACATTTTTAGGATTTCTTTAGAAGTTATCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAAACAAGCAAGAACATTTTTAGGATTTCTTTAGAAGTTATCAGC  450

seq1  AAGCATTCAGTATAGAGAGCGAGAAGGCCAGAGACCATCAGTCTTTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTCAGTATAGAGAGCGAGAAGGCCAGAGACCATCAGTCTTTTCAG  500

seq1  ACTACCTCTATGTGGTTATTTGCCAAGAGCCAGACCTCTGCCTCTAGTCT  550
      ||||||||||||||||   ||||| |||||||||||||||||||||||||
seq2  ACTACCTCTATGTGGT--ATTGCC-AGAGCCAGACCTCTGCCTCTAGTCT  547

seq1  GGTCTTCTTGTTTGTTTTGTTTTGTTTCCTTAGCTCAGGAAATTACAGAA  600
      ||||||| |||||||||   ||||||  | |||||||||||||||||| |
seq2  GGTCTTC-TGTTTGTTT--GTTTGTT--CCTAGCTCAGGAAATTACAG-A  591

seq1  TACTAACCATTCATATTAAGCATTCTCAAAAGAGCCTGCCCAGGAAGGTT  650
      |||||  || |||||||||||| |||||||  |||||| ||||||||   
seq2  TACTA--CA-TCATATTAAGCA-TCTCAAAGAAGCCTG-CCAGGAAG---  633

seq1  CCTACTGTCTCCAGTCTGATGTTATCGGCTATGAACTGTGGTGTATATAG  700
       |||||| || |||||||||||||| ||||| ||||||| |||| |||||
seq2  TCTACTG-CT-CAGTCTGATGTTAT-GGCTA-GAACTGT-GTGT-TATAG  677

seq1  CATAACAGATGATGCTGACCAAGATATTCAGGTGTCTCCAAT  742
      ||||   ||  ||||||| | ||| ||||||| || ||||||
seq2  CATA--CGAGTATGCTGAAC-AGAGATTCAGG-GT-TCCAAT  714