BAC Information

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BAC

Clone NameB6Ng01-115M11
ChromosomeX (Build37)
Map Location 34,319,827 - 34,467,857
singlet/doubletdoublet
Overlap geneSlc25a5, C330007P06Rik, Ube2a, Nkrf, Sept6
Upstream geneEG210457, Dock11, Il13ra1, Zcchc12, LOC547166, Lonrf3, EG621901, Pgrmc1, B230333C21Rik, LOC621983, Slc25a43
Downstream geneAnkrd58, Rpl39, Upf3b, 2610020O08Rik, Akap14, Ndufa1, Rnf113a1, Gm9, Rhox1, Rhox2, Rhox3, Rhox4a, LOC100039913, Rhox4b, LOC100039948, Rhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311, Rhox6, Rhox7, Rhox8, LOC436198, Rhox9, LOC100039620, 4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115M11.bB6Ng01-115M11.g
ACCDH920954DH920955
length1,0101,054
definitionDH920954|Mus musculus domesticus DNA, BAC clone: B6Ng01-115M11, 5' end.DH920955|Mus musculus domesticus DNA, BAC clone: B6Ng01-115M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,319,827 - 34,320,835)(34,466,795 - 34,467,857)
sequence
gaattcagtcagtactccatgtttgtcaattattatttccttttaagcaa
taaaacaaaacttcagaaagcactgatactgtaaacacattttctggcaa
aagttaaaaatctagcctcagattatatacatcttagtatttcttctgtg
catcttccacaaacataaaataggtgctacatggcacagaggtgttttct
gagctttgggttgttttagagttatttttaattgtgtgtatgtggggatg
agggcatgtgtatgtgaatgcaggtgcctgtggaagtcagaagcatcaga
ccccttccgatctggagtttccgatggatataaactgcttgccatggttg
ctggggaccagactcttctagatccatgtgtgctcttcctaattaagcca
tccctccagtctcactgagctgtgattttttttaataaatcaaaaatatg
gctcattttcctgtcgtttcagaatgactccttaaaattctaggtttgtt
cttaaaatgaactgagcactgtttttatttacttagatgctctgccttcc
taacttctggctaccagcacactccacacaagactaagaatttcagaact
ataaagaagtgtggcatgatatccatccaggagtaagttaagggacaaag
cgtacctatgaatgatcagaattacaaagcagacacaaagagtgacagag
tagtatctcctactgacaagactgtcaaggagctcagtctatgagtgctg
aataagtgactaaaatgctcagcacaggagataggctagtcatgagtaga
gactctgagtctttgaattaagggtttaggattttttggtttgttttgtt
ttttttttcccttctccctccagccccattcgctctggcccaacaattta
tttattattatatgtagtacaactgtagctggtttcagacaacatcaata
agaggccatcaaatctcattacagatggttgtgagccaccatgtggttgc
gggatttgaa
gaattcttcagccctactgttgctccagatcactccatttactaccagcc
tttaacatgaagagccttccattttatacttgaattgctggaactttccc
ttcctaaaatagccaagtggactttctcatgttttgactgatggataaat
acatgtccactttttaaatgtggcacccaaagcctgtcttctttttccag
actcaggaacctcccctctcactcctccatgggtcacatgatgtccccag
gcctgttcaagtatgaccacatccccaggaacaccaatcttcacttgtgt
ctttcttctgtctttggagcactggccttcaccatgctgactcctagtat
ttaaaaaataagtgcaggtcgggcagttgtcttaacctgggcctcccccc
attacaccctaagttcctttaggacaggcatggtggctctgggctctaga
tggtgagcagctagcatcatgtctattcacactggtcacttaggtgctag
gtaaaatctcagcaagtgtttggtgaagtgggaaatcagtgtggtctgtc
tcagagccagggccaggcagggcaagacagtgggagggagggagggaggc
cttaaatgaaaagacaggagacacagcttctgcctctaactaggtgtgta
atcttcagagactcactctcctccatgagccacagtttcctcatctgtaa
gagagagacagagacagagacagagacagagacagagacagagacagaaa
aagttaggtcctatggctcctccagtagctctggaatattgctgttgcat
accaagccagatgtcctgccctgccccaccccacccctttgtgctctcac
tttacatttctctgtcagaattaaggaagagagggcctattttcttgacc
aggggttgccccagaagcagtggaattgacttgatctcatctacagtttg
cagagacttatgaagcaagagaaatgagttcttgcgagctcagaagaaag
aagagagatgaagcaaatgttgtccagagagtcaagaagaaaagaagcga
gctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_34319827_34320835
seq2: B6Ng01-115M11.b_48_1057

seq1  GAATTCAGTCAGTACTCCATGTTTGTCAATTATTATTTCCTTTTAAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCAGTACTCCATGTTTGTCAATTATTATTTCCTTTTAAGCAA  50

seq1  TAAAACAAAACTTCAGAAAGCACTGATACTGTAAACACATTTTCTGGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAAAACTTCAGAAAGCACTGATACTGTAAACACATTTTCTGGCAA  100

seq1  AAGTTAAAAATCTAGCCTCAGATTATATACATCTTAGTATTTCTTCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAAAATCTAGCCTCAGATTATATACATCTTAGTATTTCTTCTGTG  150

seq1  CATCTTCCACAAACATAAAATAGGTGCTACATGGCACAGAGGTGTTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCCACAAACATAAAATAGGTGCTACATGGCACAGAGGTGTTTTCT  200

seq1  GAGCTTTGGGTTGTTTTAGAGTTATTTTTAATTGTGTGTATGTGGGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTGGGTTGTTTTAGAGTTATTTTTAATTGTGTGTATGTGGGGATG  250

seq1  AGGGCATGTGTATGTGAATGCAGGTGCCTGTGGAAGTCAGAAGCATCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATGTGTATGTGAATGCAGGTGCCTGTGGAAGTCAGAAGCATCAGA  300

seq1  CCCCTTCCGATCTGGAGTTTCCGATGGATATAAACTGCTTGCCATGGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCGATCTGGAGTTTCCGATGGATATAAACTGCTTGCCATGGTTG  350

seq1  CTGGGGACCAGACTCTTCTAGATCCATGTGTGCTCTTCCTAATTAAGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGACCAGACTCTTCTAGATCCATGTGTGCTCTTCCTAATTAAGCCA  400

seq1  TCCCTCCAGTCTCACTGAGCTGTGATTTTTTTTAATAAATCAAAAATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCAGTCTCACTGAGCTGTGATTTTTTTTAATAAATCAAAAATATG  450

seq1  GCTCATTTTCCTGTCGTTTCAGAATGACTCCTTAAAATTCTAGGTTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTTTCCTGTCGTTTCAGAATGACTCCTTAAAATTCTAGGTTTGTT  500

seq1  CTTAAAATGAACTGAGCACTGTTTTTATTTACTTAGATGCTCTGCCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATGAACTGAGCACTGTTTTTATTTACTTAGATGCTCTGCCTTCC  550

seq1  TAACTTCTGGCTACCAGCACACTCCACACAAGACTAAGAATTTCAGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCTGGCTACCAGCACACTCCACACAAGACTAAGAATTTCAGAACT  600

seq1  ATAAAGAAGTGTGGCATGATATCCATCCAGGAGTAAGTTAAGGGACAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAGTGTGGCATGATATCCATCCAGGAGTAAGTTAAGGGACAAAG  650

seq1  CGTACCTATGAATGATCAGAATTACAAAGCAGACACAAAGAGTGACAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACCTATGAATGATCAGAATTACAAAGCAGACACAAAGAGTGACAGAG  700

seq1  TAGTATCTCCTACTGACAAGACTGTCAAGGAGCTCAGTCTATGAGTGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATCTCCTACTGACAAGACTGTCAAGGAGCTCAGTCTATGAGTGCTG  750

seq1  AATAAGTGACTAAAATGCTCAGCACAGGAGATAGGCTAGTCATGAGTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTGACTAAAATGCTCAGCACAGGAGATAGGCTAGTCATGAGTAGA  800

seq1  GACTCTGAGTC-TTGAATTAA-GGTTTAGGATTTTTTGGTTTGTTTTGTT  848
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  GACTCTGAGTCTTTGAATTAAGGGTTTAGGATTTTTTGGTTTGTTTTGTT  850

seq1  TTTTTTTTCCCTTCTCCCTCCAGCCCCATTCGCTCTGGCCCAACAATTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCCCTTCTCCCTCCAGCCCCATTCGCTCTGGCCCAACAATTTA  900

seq1  TTTATTTATTATATGTAAGTAC-ACTGTAGCTGTTTTCAGAC-ACATCAA  946
      |||| ||||||||||| ||||| |||||||||| |||||||| |||||||
seq2  TTTA-TTATTATATGT-AGTACAACTGTAGCTGGTTTCAGACAACATCAA  948

seq1  TAAGAGGGCATCAAATCTCATTACAGATGGTTGTGAGCCACCATGTGGTT  996
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGCCATCAAATCTCATTACAGATGGTTGTGAGCCACCATGTGGTT  998

seq1  GCTGGGATTTGAA  1009
      || ||||||||||
seq2  GC-GGGATTTGAA  1010

seq1: chrX_34466795_34467857
seq2: B6Ng01-115M11.g_68_1121 (reverse)

seq1  GAGCTCCGCTTC-TTTCTCTTTGACTCTCTGGACAAACATCTGCCTCATC  49
      ||||| |||||| |||||  |||||||||||||| ||||| ||| |||||
seq2  GAGCT-CGCTTCTTTTCTTCTTGACTCTCTGGAC-AACATTTGCTTCATC  48

seq1  TCCTCTTCTTTCTTCTGGAGCTCCCCAAGGAACTCATTTCTCTTTGCCTC  99
      | |||||||||||||| |||||| |  | ||||||||||||| |||| ||
seq2  T-CTCTTCTTTCTTCT-GAGCTCGC--AAGAACTCATTTCTC-TTGCTTC  93

seq1  ATATGTCTCCTGCAAACTGTAGATAGGATCAAGTCAATTCCACTGCCTCT  149
      ||| |||| |||||||||||||||  |||||||||||||||||||| |||
seq2  ATAAGTCT-CTGCAAACTGTAGATGAGATCAAGTCAATTCCACTGCTTCT  142

seq1  GGGGCAACCCCTGGTCAAGAAAATAGGCCCCTCTCTTCCCTAATTCTGAC  199
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  GGGGCAACCCCTGGTCAAGAAAATAGG-CCCTCTCTTCCTTAATTCTGAC  191

seq1  AGAGAAATGTAAAGTGAGAAGCACAAAGGGGTGGGGTGGGGCAGGGCAGG  249
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGAGAAATGTAAAGTGAG-AGCACAAAGGGGTGGGGTGGGGCAGGGCAGG  240

seq1  ACATCTGGCTTGGTATGCAACAGCAATATTCCAGAGCTACTGGAGGAGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGGCTTGGTATGCAACAGCAATATTCCAGAGCTACTGGAGGAGCC  290

seq1  ATAGGACCTAACTTTTTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGACCTAACTTTTTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTG  340

seq1  TCTCTGTCTCTCTCTTACAGATGAGGAAACTGTGGCTCATGGAGGAGAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCTCTCTCTTACAGATGAGGAAACTGTGGCTCATGGAGGAGAGT  390

seq1  GAGTCTCTGAAGATTACACACCTAGTTAGAGGCAGAAGCTGTGTCTCCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCTGAAGATTACACACCTAGTTAGAGGCAGAAGCTGTGTCTCCTG  440

seq1  TCTTTTCATTTAAGGCCTCCCTCCCTCCCTCCCACTGTCTTGCCCTGCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCATTTAAGGCCTCCCTCCCTCCCTCCCACTGTCTTGCCCTGCCT  490

seq1  GGCCCTGGCTCTGAGACAGACCACACTGATTTCCCACTTCACCAAACACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGGCTCTGAGACAGACCACACTGATTTCCCACTTCACCAAACACT  540

seq1  TGCTGAGATTTTACCTAGCACCTAAGTGACCAGTGTGAATAGACATGATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGATTTTACCTAGCACCTAAGTGACCAGTGTGAATAGACATGATG  590

seq1  CTAGCTGCTCACCATCTAGAGCCCAGAGCCACCATGCCTGTCCTAAAGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGCTCACCATCTAGAGCCCAGAGCCACCATGCCTGTCCTAAAGGA  640

seq1  ACTTAGGGTGTAATGGGGGGAGGCCCAGGTTAAGACAACTGCCCGACCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGGTGTAATGGGGGGAGGCCCAGGTTAAGACAACTGCCCGACCTG  690

seq1  CACTTATTTTTTAAATACTAGGAGTCAGCATGGTGAAGGCCAGTGCTCCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATTTTTTAAATACTAGGAGTCAGCATGGTGAAGGCCAGTGCTCCA  740

seq1  AAGACAGAAGAAAGACACAAGTGAAGATTGGTGTTCCTGGGGATGTGGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGAAGAAAGACACAAGTGAAGATTGGTGTTCCTGGGGATGTGGTC  790

seq1  ATACTTGAACAGGCCTGGGGACATCATGTGACCCATGGAGGAGTGAGAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGAACAGGCCTGGGGACATCATGTGACCCATGGAGGAGTGAGAGG  840

seq1  GGAGGTTCCTGAGTCTGGAAAAAGAAGACAGGCTTTGGGTGCCACATTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTCCTGAGTCTGGAAAAAGAAGACAGGCTTTGGGTGCCACATTTA  890

seq1  AAAAGTGGACATGTATTTATCCATCAGTCAAAACATGAGAAAGTCCACTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGGACATGTATTTATCCATCAGTCAAAACATGAGAAAGTCCACTT  940

seq1  GGCTATTTTAGGAAGGGAAAGTTCCAGCAATTCAAGTATAAAATGGAAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTTTAGGAAGGGAAAGTTCCAGCAATTCAAGTATAAAATGGAAGG  990

seq1  CTCTTCATGTTAAAGGCTGGTAGTAAATGGAGTGATCTGGAGCAACAGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCATGTTAAAGGCTGGTAGTAAATGGAGTGATCTGGAGCAACAGTA  1040

seq1  GGGCTGAAGAATTC  1063
      ||||||||||||||
seq2  GGGCTGAAGAATTC  1054