BAC Information

Click to search

BAC

Clone NameB6Ng01-116M03
ChromosomeX (Build37)
Map Location 151,503,526 - 151,504,598
singlet/doubletsinglet
Overlap genenone
Upstream geneEG546397, OTTMUSG00000019256, EG434874, LOC635580, EG625767, LOC270665, LOC100040076, 4930524N10Rik, EG434879, LOC667313, 4930542N07Rik, EG434881, LOC100040899, LOC667331, LOC100040925, LOC100040937, Magea6, Magea3, LOC626034, Magea8, Magea2, Magea5
Downstream geneMagea1, 1700042B14Rik, LOC245676, Amd-ps1, LOC667369, Sat1, Acot9, LOC667383, Prdx4, LOC667394, Ptchd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116M03.bB6Ng01-116M03.g
ACCDH921676DH921677
length1271,058
definitionDH921676|Mus musculus domesticus DNA, BAC clone: B6Ng01-116M03, 5' end.DH921677|Mus musculus domesticus DNA, BAC clone: B6Ng01-116M03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tgaggctcactcctagccacagtggctgacactaagattctgctgctgcc
aagtgccatagattactgggcctgcaggcaaagaagcaaagaatgggtgg
gctgggtctggtcaacaaggtgggggg
gaattctctgtggctgtgtcctggataggtgagaacacagatgtcaaagc
ttttgtcaaagacccagtcatttccatcatcactgcccctgttcccaatc
atgtcttttgtacccacctaactgttcctgctgcttcttgttttctgaac
ttccttgtgcctctgaaaaccagaaaggtttccctgccatccttgcaaca
gggtctattgcagaaggcttcttcctaccaaacagcacagccttgtcccg
tgaaggcagtgcaccttggtctgagaggctcaaactgggctgcaatttag
gtacttagaaagctatccattttaccttgccattgtgctaggcattcact
ctgacttggtggataatttgctgtacttgggaccattaccctgaaatatg
gagactgattttgttatctggaaatggagtttattcccatggacagattt
ataattaagcagaagtctttgaaagagagaatggaactgatataatgttg
gtttgaggggccatactgttctggataattttatgtagtgagatacaagc
taaagtcatttgagaggaaggaacctcaattgagaaaagagctacataag
attggataattgtcatgggtttgaacatttttttaattaataattgatag
gagaggggtagcccattgtaagtgataccaccatgggctggtcctattgg
attctatatgaaagcacactgagcaaccaaggtggtcaaggtagtaacca
gcactccttcatggcctttgcatcttctatggactccaggttcctgccct
aattaaggtctaaatgcatgcacctcactcttccctcaccctcacccatt
tccctgggaatctagagcccctttctattatacatgaaccttgcttatat
aaaatataatccaagacatgttgtggaatttctgtcaaaatcacaatagt
tgcaaatatattttcctttgattcaatattgcatacttgaaaacaaagct
agggaagccctatcattttccttaattcaatattgccatactggaaaaca
aagctagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_151503526_151504598
seq2: B6Ng01-116M03.g_70_1127 (reverse)

seq1  CCTAGCCTTTTGTTTTCCCAGGTATTGCAATATTGAATTTAAAGGAAAAT  50
      ||||||  ||||||||||   |||| |||||||||||||  |||||||||
seq2  CCTAGC--TTTGTTTTCC--AGTATGGCAATATTGAATT--AAGGAAAAT  44

seq1  GATAGTGCTTTCCCTAGCCTTTTGTTTTTCCAGGTATTGCAATATTGAAT  100
      ||||| || |||||||||  ||||||||  || ||| |||||||||||| 
seq2  GATAGGGC-TTCCCTAGC--TTTGTTTT--CAAGTA-TGCAATATTGAA-  87

seq1  TCAAAGGAAAATATATTTGC-ACTATTGTGATTTTTGACAGAAAATTTCC  149
      |||||||||||||||||||| |||||||||| ||||||||||||  ||||
seq2  TCAAAGGAAAATATATTTGCAACTATTGTGA-TTTTGACAGAAA--TTCC  134

seq1  ACAACATGTCTTGGATTATATTTTATATGAAGCAAGGTTCATGTATAATA  199
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACAACATGTCTTGGATTATATTTTATAT-AAGCAAGGTTCATGTATAATA  183

seq1  GAAAGGGGCTCTAGATT-CCAGGGAAATGGGTGAGGGTGAGGGAAGAGTG  248
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAAAGGGGCTCTAGATTCCCAGGGAAATGGGTGAGGGTGAGGGAAGAGTG  233

seq1  AGGTGCATGCATTTAGACCTTAATTAGGGCAGGAACCTGGAGTCCATAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCATGCATTTAGACCTTAATTAGGGCAGGAACCTGGAGTCCATAGA  283

seq1  AGATGCAAAGGCCATGAAGGAGTGCTGGTTACTACCTTGACCACCTTGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAAAGGCCATGAAGGAGTGCTGGTTACTACCTTGACCACCTTGGT  333

seq1  TGCTCAGTGTGCTTTCATATAGAATCCAATAGGACCAGCCCATGGTGGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTGTGCTTTCATATAGAATCCAATAGGACCAGCCCATGGTGGTA  383

seq1  TCACTTACAATGGGCTACCCCTCTCCTATCAATTATTAATTAAAAAAATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTACAATGGGCTACCCCTCTCCTATCAATTATTAATTAAAAAAATG  433

seq1  TTCAAACCCATGACAATTATCCAATCTTATGTAGCTCTTTTCTCAATTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACCCATGACAATTATCCAATCTTATGTAGCTCTTTTCTCAATTGA  483

seq1  GGTTCCTTCCTCTCAAATGACTTTAGCTTGTATCTCACTACATAAAATTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTTCCTCTCAAATGACTTTAGCTTGTATCTCACTACATAAAATTA  533

seq1  TCCAGAACAGTATGGCCCCTCAAACCAACATTATATCAGTTCCATTCTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAACAGTATGGCCCCTCAAACCAACATTATATCAGTTCCATTCTCT  583

seq1  CTTTCAAAGACTTCTGCTTAATTATAAATCTGTCCATGGGAATAAACTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAAGACTTCTGCTTAATTATAAATCTGTCCATGGGAATAAACTCC  633

seq1  ATTTCCAGATAACAAAATCAGTCTCCATATTTCAGGGTAATGGTCCCAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGATAACAAAATCAGTCTCCATATTTCAGGGTAATGGTCCCAAG  683

seq1  TACAGCAAATTATCCACCAAGTCAGAGTGAATGCCTAGCACAATGGCAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCAAATTATCCACCAAGTCAGAGTGAATGCCTAGCACAATGGCAAG  733

seq1  GTAAAATGGATAGCTTTCTAAGTACCTAAATTGCAGCCCAGTTTGAGCCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATGGATAGCTTTCTAAGTACCTAAATTGCAGCCCAGTTTGAGCCT  783

seq1  CTCAGACCAAGGTGCACTGCCTTCACGGGACAAGGCTGTGCTGTTTGGTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACCAAGGTGCACTGCCTTCACGGGACAAGGCTGTGCTGTTTGGTA  833

seq1  GGAAGAAGCCTTCTGCAATAGACCCTGTTGCAAGGATGGCAGGGAAACCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGCCTTCTGCAATAGACCCTGTTGCAAGGATGGCAGGGAAACCT  883

seq1  TTCTGGTTTTCAGAGGCACAAGGAAGTTCAGAAAACAAGAAGCAGCAGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTTTCAGAGGCACAAGGAAGTTCAGAAAACAAGAAGCAGCAGGA  933

seq1  ACAGTTAGGTGGGTACAAAAGACATGATTGGGAACAGGGGCAGTGATGAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAGGTGGGTACAAAAGACATGATTGGGAACAGGGGCAGTGATGAT  983

seq1  GGAAATGACTGGGTCTTTGACAAAAGCTTTGACATCTGTGTTCTCACCTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGACTGGGTCTTTGACAAAAGCTTTGACATCTGTGTTCTCACCTA  1033

seq1  TCCAGGACACAGCCACAGAGAATTC  1073
      |||||||||||||||||||||||||
seq2  TCCAGGACACAGCCACAGAGAATTC  1058