BAC Information

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BAC

Clone NameB6Ng01-117G07
ChromosomeX (Build37)X (Build37)
Map Location 17,070,800 - 17,071,28488,523,351 - 88,524,446
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCypt6, LOC100038939, LOC668993, Maoa, Maob, Ndph, LOC100043063, Efhc2
Downstream geneFundc1, EG278181, EG668994, EG436196, EG331391, Dusp21, LOC100043951, Utx, LOC100043952, 4930578C19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117G07.bB6Ng01-117G07.g
ACCDH922146DH922147
length1,1401,085
definitionDH922146|Mus musculus domesticus DNA, BAC clone: B6Ng01-117G07, 5' end.DH922147|Mus musculus domesticus DNA, BAC clone: B6Ng01-117G07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,070,800 - 17,071,284)(88,523,351 - 88,524,446)
sequence
gaattctcaactgaggaatacaaaagggctgagaagcacctgaaaaaaat
gttcaacatccttaatcatcagagaaatgcaaatcaaaacaatcctgaga
ttccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgaaag
cagatgctggcaaggatgtggagaaagaggagcactcattcattgctggt
aggattgcaagattgtacaaccactcagaaaatcagtctggtactgtcac
aggaaattggacatagtactactggaagatgcagcaatacttctcctggg
catatacccagaagatgttccaactggtaagaaggagacatgctccacta
tgtttataacaacgttatttataatagccagaagctggaaagaacccaga
tgtccctcaacagaggaatggatacagtaaatatggtacatttacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctaggca
aatggatggacctgaaggatctcatccttagtgaggttacccaatcacaa
aagaagttattagatatgcactcactgataagttgatattagccaagaaa
catagaatacccaagatacaatttgcaaaacacaagaaaatcaagaagga
agaccaaagtgtggatactttgtttcttcttagaatagggaacaaaatac
ccatggaaggagttacagagacaaagtttggagctaagacgaaaggatgg
accatccagagactaccccatctggggatccatcccataatcagccacca
aatccagacactattgcatatgcctacaaggttttgctgaaaggaccctg
atatagctgtctcttgtgaggctatgctggggcctagcaaacacagaagt
ggatgctcatagtcatctattgggtggaacacaggtccccaatggaggag
ctagagaaagtacccaaggatctgaagggtctgcaccctatagtgaacac
aatgtgaactaccagtacctccagagcctcgagtctctagctgcatatgt
agcagaagatgccctagtagccatcatgggaaaagagccctaagtctttc
aaactttatatgcccagtacaggggccaggaccaagaatt
gaattctgggaacacatgcctgtcaagatgcctggaaatgaatatcatta
ttttattttattttcttgggcaaataagaactttaacaatgctctttatt
gattgatttttaaatcacatattgaacagatattttaagacattttcttg
ctattttgaaaacaaaattaagtacatgtacctttggttaatgcctctta
gatatatactaccttaaggaacaataagaaaattaaggagtgcaaaaatg
attccttgaatattatattgcagatagaaggaataaaatggtaaaacaag
tattaggttggaacacttaccatccatttcttgtctatgcggaatctctg
gtatagaaggttctggtctacagaactgctttcagctgactctgaatttt
ggcatgaatgaagaaaaaatacataaaatgaatctcatggttagttgtat
ctgagaaattaaaaaaatgcaagaggaaacaaaaatggactgtttatgta
tttgttctaggtttaatttgatgtctcttctcccagttagtagtctttta
ttattaaattactttacttatttacattctaactgttgcccccttcctgt
ctttcaatagaagtatgtatacagaaaatgtggaagacttacacaatgga
atactactcagctattatatcgctgacttcaggcaaaaggagggaactag
aaaataacatcctgaatgaggtaacccagaccaaaaatgacatacatgga
atgtactcactgataagtggatattagcccaaaagttcctaatacccact
tatacaattcatagatcacatgaacctaaacaaggaggggcaaagtatag
atagacttgttccctggttgagggatggggtcactcacacatctcaaaac
atttaactcagaattggttctatctaaagagatgcaggacaaaaatggaa
cagagactgaaagatagtcatcagacactaccccacactgggatcatacc
acccacagacaccataccctgatatatgccgatgccaagaagtgctttca
aaaggattctagtatagctttctctgaaagtctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_17070800_17071284
seq2: B6Ng01-117G07.b_1143_1183 (reverse)

seq1  AATTCTTGGTCCTGGCCAGTTTCCCATTAAAAACATAATATTGGGTTTCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGCTACCATTTTTGTCATTTCTCAATCTTTGTTGTAAATGTCACATCA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GATCATAACAAAAGACTGTTTACATGCTCAAAAGTCTTTATGAAAGCAAT  150
                                                        
seq2  --------------------------------------------------  0

seq1  GAGACCTATTTGGGTTCAAGAGGGCTGGCCATATAATGACAAAGATAAGT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TGGAAATTGTATCAAAGAATAACCTAAATAAGCTGTTGAATTTTTTAAAA  250
                                                        
seq2  --------------------------------------------------  0

seq1  AAATAATTTTAAATTATCTTTTTAAAGTTGTTAATTTTAGAGGCTACATA  300
                                                        
seq2  --------------------------------------------------  0

seq1  GCTAAGCAGTGCATTGTTCACATCCCACTAGTGTTGCTGTAATATCTTTT  350
                                                        
seq2  --------------------------------------------------  0

seq1  TTTAGATATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAGTCCCCT  400
                                                        
seq2  --------------------------------------------------  0

seq1  ATACCATCCCCCGCCCTGCTCCCCTACCCACTCACTCCCACTTCTTGGCC  450
                                             | ||||||| |
seq2  ---------------------------------------AATTCTTGGTC  11

seq1  CTGGCTTTCCCCTGTACTGGGGCATATAAGGTTTG  485
      ||||    |||||||||| |||||||||| |||||
seq2  CTGG----CCCCTGTACT-GGGCATATAAAGTTTG  41

seq1: chrX_88523351_88524446
seq2: B6Ng01-117G07.g_67_1151

seq1  GAATTCTGGGAACACATGCCTGTCAAGATGCCTGGAAATGAATATCATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAACACATGCCTGTCAAGATGCCTGGAAATGAATATCATTA  50

seq1  TTTTATTTTATTTTCTTGGGCAAATAAGAACTTTAACAATGCTCTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTATTTTCTTGGGCAAATAAGAACTTTAACAATGCTCTTTATT  100

seq1  GATTGATTTTTAAATCACATATTGAACAGATATTTTAAGACATTTTCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATTTTTAAATCACATATTGAACAGATATTTTAAGACATTTTCTTG  150

seq1  CTATTTTGAAAACAAAATTAAGTACATGTACCTTTGGTTAATGCCTCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTGAAAACAAAATTAAGTACATGTACCTTTGGTTAATGCCTCTTA  200

seq1  GATATATACTACCTTAAGGAACAATAAGAAAATTAAGGAGTGCAAAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATACTACCTTAAGGAACAATAAGAAAATTAAGGAGTGCAAAAATG  250

seq1  ATTCCTTGAATATTATATTGCAGATAGAAGGAATAAAATGGTAAAACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTGAATATTATATTGCAGATAGAAGGAATAAAATGGTAAAACAAG  300

seq1  TATTAGGTTGGAACACTTACCATCCATTTCTTGTCTATGCGGAATCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGTTGGAACACTTACCATCCATTTCTTGTCTATGCGGAATCTCTG  350

seq1  GTATAGAAGGTTCTGGTCTACAGAACTGCTTTCAGCTGACTCTGAATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGAAGGTTCTGGTCTACAGAACTGCTTTCAGCTGACTCTGAATTTT  400

seq1  GGCATGAATGAAGAAAAAATACATAAAATGAATCTCATGGTTAGTTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGAATGAAGAAAAAATACATAAAATGAATCTCATGGTTAGTTGTAT  450

seq1  CTGAGAAATTAAAAAAATGCAAGAGGAAACAAAAATGGACTGTTTATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAATTAAAAAAATGCAAGAGGAAACAAAAATGGACTGTTTATGTA  500

seq1  TTTGTTCTAGGTTTAATTTGATGTCTCTTCTCCCAGTTAGTAGTCTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTAGGTTTAATTTGATGTCTCTTCTCCCAGTTAGTAGTCTTTTA  550

seq1  TTATTAAATTACTTTACTTATTTACATTCTAACTGTTGCCCCCTTCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAATTACTTTACTTATTTACATTCTAACTGTTGCCCCCTTCCTGT  600

seq1  CTTTCAATAGAAGTATGTATACAGAAAATGTGGAAGACTTACACAATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAATAGAAGTATGTATACAGAAAATGTGGAAGACTTACACAATGGA  650

seq1  ATACTACTCAGCTATTATATCGCTGACTTCAGGCAAAAGGAGGGAACTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACTCAGCTATTATATCGCTGACTTCAGGCAAAAGGAGGGAACTAG  700

seq1  AAAATAACATCCTGAATGAGGTAACCCAGACCAAAAATGACATACATGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACATCCTGAATGAGGTAACCCAGACCAAAAATGACATACATGGA  750

seq1  ATGTACTCACTGATAAGTGGATATTAGCCCAAAAGTTCCTAATACCCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTCACTGATAAGTGGATATTAGCCCAAAAGTTCCTAATACCCACT  800

seq1  TATACAATTCATAGATCACATGAACCTAAACAAGGAGGGGCAAAGTATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAATTCATAGATCACATGAACCTAAACAAGGAGGGGCAAAGTATAG  850

seq1  ATAGACTTGTTCCCTGGTTGAGGGATGGGGTCACTCACACATCTCAAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTTGTTCCCTGGTTGAGGGATGGGGTCACTCACACATCTCAAAAC  900

seq1  ATTTAACTCAGAATTGGTTCTATCTAAAGAAGATGCAGGGACAAAAATGG  950
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  ATTTAACTCAGAATTGGTTCTATCTAAAG-AGATGCA-GGACAAAAATGG  948

seq1  AACAGAGACTGAAAGATAGGTCATCAAGACACTACCCCACACTGGGATCC  1000
      |||||||||||||||||| |||||| |||||||||||||||||||||| |
seq2  AACAGAGACTGAAAGATA-GTCATC-AGACACTACCCCACACTGGGAT-C  995

seq1  ATACCACCCACAGACACCATACCCTGATATTATTGCCGATGCCAAGAGGT  1050
      ||||||||||||||||||||||||||||||   |||||||||||||| ||
seq2  ATACCACCCACAGACACCATACCCTGATAT--ATGCCGATGCCAAGAAGT  1043

seq1  GCTTTCAAACAGGATTCTAGTATAGCTATCCTCTGAAAGGCTCTAC  1096
      ||||||||| ||||||||||||||||| | |||||||||  |||||
seq2  GCTTTCAAA-AGGATTCTAGTATAGCT-TTCTCTGAAAG--TCTAC  1085