BAC Information

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BAC

Clone NameB6Ng01-118H13
ChromosomeX (Build37)
Map Location 141,398,556 - 141,517,816
singlet/doubletdoublet
Overlap geneZcchc16
Upstream geneLOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436, LOC666655
Downstream geneLOC623591, Lhfpl1, Amot, EG434860, LOC100039313, LOC623697, LOC623731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118H13.bB6Ng01-118H13.g
ACCDH922941DH922942
length1,1551,104
definitionDH922941|Mus musculus domesticus DNA, BAC clone: B6Ng01-118H13, 5' end.DH922942|Mus musculus domesticus DNA, BAC clone: B6Ng01-118H13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,398,556 - 141,399,717)(141,516,737 - 141,517,816)
sequence
gaattcattaggaaatttatgggtaattattgttgcaatatgcttgaaga
cattttattaaagcagttatgaggtaattaatcttgtcaataagctatgg
agtgagtatgttatgggatttttttttctatttcttcatgctattttctc
ctattccagtctctgaaaatatccagatctgcttgtcaattctgatgctt
ccatcctctcctgagcaaagattcaggcaggtgcacacagcagaattatt
ttctcttccaaggaagccaaaatgatcaaagactctttgctatcttctgc
ttttatgccgtttttgtttatttgttgtttgtttgttgctatttaagact
aaaacatatttgcaattccattgcctttcgatataaaacatctctccaaa
ttctgtgacatgatattactgctgggtaaccaccagaaaacaatagtctc
tgttcctctctccccacattatctgtgatcctccattcccgagaatacct
aataagaatagtgaatttacccttccatgaaatgtggtgattaccattaa
agtgatcaaaatatgatgcctgtctacacatttcctttaaacaggcattt
attacaagttggttgacaagaatttttatgaagtgaaattttagaaaatg
ccatcagaacatagcaagaacttagcatttgttttcttactggattgtaa
agggacttaaatatttcctcacaattttattgtaaaatagctcaatccat
ctttctgtgtgtatatgtgtgtatgtgggacatatgtatacagtggttga
tatgaaaaatataaacatataaagtatgttatttattttatgtgagcata
gttttttttttaagatacataatgataagtgtaaacagtcttttaacaga
gctacttcctggattttagtctgtgacttacatgtaacttcccaaggacc
tatccactgagtaagaagaacaccttttttcttcctactgtgctcatgaa
agcttctggctaaaattgcttaaagcaaaagaattctgcaaagaatcaag
acagctagtgtgactcagcagtttcttgatcttcttagggattcttgatc
tctgtaattcaaagtaatgacatgatggtcatcatctccatgtaagcaaa
atggt
gaattctacatattagccatcagggaaaggcaaattaaagctgctttgtt
gttccatcccatatcacttggaatagtgatcatcaaaaaaaaaaaaaaaa
tgacaacaaatgccagcaatgctgtgaggaaatcttatatatttctgccg
aggctacaaattgctgtagccagtctagaaaccagactagaggtttctca
gaaaacaaccatattatgcagctataactctttttttttgtttacatatg
tgaaggactctaagataacaagcctcagaaatatgtccacgttcaatttt
attgctgctgttcaattcacagtaggtagaaatttagagcatccttggtg
tccatcaacagaaaaatagataaagaaaatgctatacaaataaaagattg
aattatattcagctgtaaagaaaacaataaaatcctaatatttgcagaaa
atgaaatcaactggaaatcattatgttagaataagccaggttcaaatgaa
tattgcatgctttttctcgtgcagaatatacgttcaaatttgtatagatg
tttataaacatatacatgaagtgaaactgggtcttggaaattacaaaggg
gagcataacagagaaggaaaacattccaagtgaccaacaggggagggggt
gtacaaaatagttgccagtagagttggcatgacaggaaatcaaaaagtga
agattatttttcagaaagtagatgaccagtatgaagagcgaggatgaata
gagagaaatgaattagaacaaactaaaatgacatgtgtatatataaaatg
tcataagaaaaatcattaatttaaatgccaaattacagataataaagtga
aataatctggcaagataagaaattcagagatgagaaaaggagtaggtctg
acacttttcataacagctatttcttacagtgtcccggaaaagactacact
agttccctttcttggagcagtgtccagtgactttaatgattctcatacgg
ggcactggctcttaaggttttaaaacctatgggtttcacacattggggaa
ctaaatctcctaggatgtgacttctcagtagcatacttatcataggcatt
tgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_141398556_141399717
seq2: B6Ng01-118H13.b_45_1199

seq1  GAATTCATTAGGAAATTTATGGGTAATTATTGTTGCAATATGCTTGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGGAAATTTATGGGTAATTATTGTTGCAATATGCTTGAAGA  50

seq1  CATTTTATTAAAGCAGTTATGAGGTAATTAATCTTGTCAATAAGCTATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATTAAAGCAGTTATGAGGTAATTAATCTTGTCAATAAGCTATGG  100

seq1  AGTGAGTATGTTATGGGATTTTTTTTTCTATTTCTTCATGCTATTTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTATGTTATGGGATTTTTTTTTCTATTTCTTCATGCTATTTTCTC  150

seq1  CTATTCCAGTCTCTGAAAATATCCAGATCTGCTTGTCAATTCTGATGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCAGTCTCTGAAAATATCCAGATCTGCTTGTCAATTCTGATGCTT  200

seq1  CCATCCTCTCCTGAGCAAAGATTCAGGCAGGTGCACACAGCAGAATTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTCTCCTGAGCAAAGATTCAGGCAGGTGCACACAGCAGAATTATT  250

seq1  TTCTCTTCCAAGGAAGCCAAAATGATCAAAGACTCTTTGCTATCTTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCCAAGGAAGCCAAAATGATCAAAGACTCTTTGCTATCTTCTGC  300

seq1  TTTTATGCCGTTTTTGTTTATTTGTTGTTTGTTTGTTGCTATTTAAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGCCGTTTTTGTTTATTTGTTGTTTGTTTGTTGCTATTTAAGACT  350

seq1  AAAACATATTTGCAATTCCATTGCCTTTCGATATAAAACATCTCTCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATATTTGCAATTCCATTGCCTTTCGATATAAAACATCTCTCCAAA  400

seq1  TTCTGTGACATGATATTACTGCTGGGTAACCACCAGAAAACAATAGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGACATGATATTACTGCTGGGTAACCACCAGAAAACAATAGTCTC  450

seq1  TGTTCCTCTCTCCCCACATTATCTGTGATCCTCCATTCCCGAGAATACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCTCTCCCCACATTATCTGTGATCCTCCATTCCCGAGAATACCT  500

seq1  AATAAGAATAGTGAATTTACCCTTCCATGAAATGTGGTGATTACCATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAATAGTGAATTTACCCTTCCATGAAATGTGGTGATTACCATTAA  550

seq1  AGTGATCAAAATATGATGCCTGTCTACACATTTCCTTTAAACAGGCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCAAAATATGATGCCTGTCTACACATTTCCTTTAAACAGGCATTT  600

seq1  ATTACAAGTTGGTTGACAAGAATTTTTATGAAGTGAAATTTTAGAAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAGTTGGTTGACAAGAATTTTTATGAAGTGAAATTTTAGAAAATG  650

seq1  CCATCAGAACATAGCAAGAACTTAGCATTTGTTTTCTTACTGGATTGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGAACATAGCAAGAACTTAGCATTTGTTTTCTTACTGGATTGTAA  700

seq1  AGGGACTTAAATATTTCCTCACAATTTTATTGTAAAATAGCTCAATCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTTAAATATTTCCTCACAATTTTATTGTAAAATAGCTCAATCCAT  750

seq1  CTTTCTGTGTGTATATGTGTGTATGT-GGACATATGTATACAGTGGTTGA  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTTCTGTGTGTATATGTGTGTATGTGGGACATATGTATACAGTGGTTGA  800

seq1  TATGAAAAATATAAACATATAAAGTATGTTATTTATTTTATGTGAGCATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAAATATAAACATATAAAGTATGTTATTTATTTTATGTGAGCATA  850

seq1  GTTTTTTTTTTAAGATACATAATGATAAGTGTAAACAGTCTTTTAACAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTAAGATACATAATGATAAGTGTAAACAGTCTTTTAACAGA  900

seq1  GCTACTTCCTGGATTTTAGTCTGTGACTTACATGTAACTTCCCAAGAACC  949
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCTACTTCCTGGATTTTAGTCTGTGACTTACATGTAACTTCCCAAGGACC  950

seq1  TATCCACTGAGTAAAGAGAACACCTTTTTTCTTCCTACTGTGCTCATGAA  999
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  TATCCACTGAGTAAGAAGAACACCTTTTTTCTTCCTACTGTGCTCATGAA  1000

seq1  AGCTTCTGGCTAAAAAATTGCTTAAAGCAAAAGAA-TCTGCAGAGAATCA  1048
      |||||||||||  |||||||||||||||||||||| |||||| |||||||
seq2  AGCTTCTGGCT--AAAATTGCTTAAAGCAAAAGAATTCTGCAAAGAATCA  1048

seq1  AAGGACAAGCTAGTGTGGACCTCAGGCAGTTCCTTGATCTTCTTAGGGA-  1097
      |  ||| ||||||||||   |||| |||||| ||||||||||||||||| 
seq2  A--GAC-AGCTAGTGTG--ACTCA-GCAGTTTCTTGATCTTCTTAGGGAT  1092

seq1  TCTTGATCTCTGTAATTCAAAGGTAATGACAGGATGGGCATCAGTCTCCA  1147
      ||||||||||||||||||||| ||||||||| ||||| ||||| ||||||
seq2  TCTTGATCTCTGTAATTCAAA-GTAATGACATGATGGTCATCA-TCTCCA  1140

seq1  TGTAGGCAAAATGGT  1162
      |||| ||||||||||
seq2  TGTAAGCAAAATGGT  1155

seq1: chrX_141516737_141517816
seq2: B6Ng01-118H13.g_89_1172 (reverse)

seq1  AACAAATG-CTATGGATTAAGTATGCTACTTGAGAAGTCACATCCTA-GA  48
      |||||||| |||||   |||||||||||| ||||||||||||||||| ||
seq2  AACAAATGCCTATG--ATAAGTATGCTAC-TGAGAAGTCACATCCTAGGA  47

seq1  GATTTAGTT-CCCAATGTGGTGATACCCATAGGTTTTAAAACCCTTAGGA  97
      ||||||||| |||||||| |||| ||||||||||||||||| ||||| ||
seq2  GATTTAGTTCCCCAATGT-GTGAAACCCATAGGTTTTAAAA-CCTTAAGA  95

seq1  GGCAGTGCCCCGTATGAG-ATCATT-AAGTCACTGGACACTGCTCAAAGA  145
      | |||||||||||||||| |||||| ||||||||||||||||||| ||||
seq2  GCCAGTGCCCCGTATGAGAATCATTAAAGTCACTGGACACTGCTCCAAGA  145

seq1  A--GGGACTAGTGTAGTCTTTT-CGGGACACTGTAAGAAATAGCTGTTAT  192
      |  || |||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGGGAACTAGTGTAGTCTTTTCCGGGACACTGTAAGAAATAGCTGTTAT  195

seq1  GAAAAGTGTCAGA-CTACTTCTTTTCTCATCTCTGAATTTCTTATCTTGC  241
      ||||||||||||| ||||| ||||||||||||||||||||||||||||||
seq2  GAAAAGTGTCAGACCTACTCCTTTTCTCATCTCTGAATTTCTTATCTTGC  245

seq1  CAGATTATTTCACTTTATTATCTGTAATTTGGCATTTAAATTAATGATTT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTATTTCACTTTATTATCTGTAATTTGGCATTTAAATTAATGATTT  295

seq1  TTCTTATGACATTTTATATATACACATGTCATTTTAGTTTGTTCTAATTC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATGACATTTTATATATACACATGTCATTTTAGTTTGTTCTAATTC  345

seq1  ATTTCTCTCTATTCATCCTCGCTCTTCATACTGGTCATCTACTTTCTGAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTCTATTCATCCTCGCTCTTCATACTGGTCATCTACTTTCTGAA  395

seq1  AAATAATCTTCACTTTTTGATTTCCTGTCATGCCAACTCTACTGGCAACT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCTTCACTTTTTGATTTCCTGTCATGCCAACTCTACTGGCAACT  445

seq1  ATTTTGTACACCCCCTCCCCTGTTGGTCACTTGGAATGTTTTCCTTCTCT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTACACCCCCTCCCCTGTTGGTCACTTGGAATGTTTTCCTTCTCT  495

seq1  GTTATGCTCCCCTTTGTAATTTCCAAGACCCAGTTTCACTTCATGTATAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGCTCCCCTTTGTAATTTCCAAGACCCAGTTTCACTTCATGTATAT  545

seq1  GTTTATAAACATCTATACAAATTTGAACGTATATTCTGCACGAGAAAAAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAAACATCTATACAAATTTGAACGTATATTCTGCACGAGAAAAAG  595

seq1  CATGCAATATTCATTTGAACCTGGCTTATTCTAACATAATGATTTCCAGT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAATATTCATTTGAACCTGGCTTATTCTAACATAATGATTTCCAGT  645

seq1  TGATTTCATTTTCTGCAAATATTAGGATTTTATTGTTTTCTTTACAGCTG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCATTTTCTGCAAATATTAGGATTTTATTGTTTTCTTTACAGCTG  695

seq1  AATATAATTCAATCTTTTATTTGTATAGCATTTTCTTTATCTATTTTTCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATTCAATCTTTTATTTGTATAGCATTTTCTTTATCTATTTTTCT  745

seq1  GTTGATGGACACCAAGGATGCTCTAAATTTCTACCTACTGTGAATTGAAC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGGACACCAAGGATGCTCTAAATTTCTACCTACTGTGAATTGAAC  795

seq1  AGCAGCAATAAAATTGAACGTGGACATATTTCTGAGGCTTGTTATCTTAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAATAAAATTGAACGTGGACATATTTCTGAGGCTTGTTATCTTAG  845

seq1  AGTCCTTCACATATGTAAACAAAAAAAAAGAGTTATAGCTGCATAATATG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTCACATATGTAAACAAAAAAAAAGAGTTATAGCTGCATAATATG  895

seq1  GTTGTTTTCTGAGAAACCTCTAGTCTGGTTTCTAGACTGGCTACAGCAAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTCTGAGAAACCTCTAGTCTGGTTTCTAGACTGGCTACAGCAAT  945

seq1  TTGTAGCCTCGGCAGAAATATATAAGATTTCCTCACAGCATTGCTGGCAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCCTCGGCAGAAATATATAAGATTTCCTCACAGCATTGCTGGCAT  995

seq1  TTGTTGTCATTTTTTTTTTTTTTTTGATGATCACTATTCCAAGTGATATG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTCATTTTTTTTTTTTTTTTGATGATCACTATTCCAAGTGATATG  1045

seq1  GGATGGAACAACAAAGCAGCTTTAATTTGCCTTTCCCTG  1080
      |||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAACAACAAAGCAGCTTTAATTTGCCTTTCCCTG  1084