BAC Information

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BAC

Clone NameB6Ng01-118J09
ChromosomeX (Build37)
Map Location 54,220,910 - 54,358,704
singlet/doubletdoublet
Overlap geneGpr112, Brs3, Htatsf1, Vgll1
Upstream geneLOC100039187, LOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3
Downstream geneCd40lg, Arhgef6, Rbmx, Snord61, Gm364, Gpr101, Aldoa-ps, EG666441, LOC666447, Zic3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118J09.bB6Ng01-118J09.g
ACCDH923025DH923026
length1,170988
definitionDH923025|Mus musculus domesticus DNA, BAC clone: B6Ng01-118J09, 5' end.DH923026|Mus musculus domesticus DNA, BAC clone: B6Ng01-118J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,357,528 - 54,358,704)(54,220,910 - 54,221,894)
sequence
gaattctggatccacgggagaaaaagcagtatcaggctgcgcgcgtgcgc
acacacacaaattctcttcatccaactgaggctaataatagtaggcatct
cttcttcgctttggagatgggcttcctgaaaaacagggtaagcgtgatgg
tgaggaagctggttttcaaatcgagtgagcccaagttggagtcctggctc
accagtaccttagcctgtctgagctctacctcactcatattgaatggatg
tattaaaaagaagtacttcctaaggttctagtacaggatcatacgtatca
ctggcaagtaatgtccattgtattttttatcatacttttttcacagttct
tttgcctggttaaatgcaatgtggggaacctccaaaaacaaacaagaaac
aaaaccccactatgcttacttagagccagattgtccatagccttgatttg
aactgcatccttaaatctaagggaggcacttcataaaccaccttatgata
acacttgcaaaagaaaattctttaagataagagacatgattctatcaatt
atttatgctttttatttcattttaaacttgacttaattttggcctgtgtt
taatcttcaaacttattgaaattataccctgtgatcgatgtaacttaaaa
taccatgaaaacacacacacacacacacacacacacaatctaccactgag
ctgtactccagagtcacttagtactgtttcaatggccaactatagctaag
tattattctaagcatttacacatattatttcattaaagtcccacagaacc
cctatgtgtggttactgttttatgcttgtcttaataacgaagcaactaag
gaactgggaagttcaaaaactgtaagcgagtatctgagactagtaaatat
cagagctgaaattggaaccctgagctttggttgtgaagcgcttgcatttc
tactcagcctgttctcattttgaagctcttaatttcaaattcagtgtaga
gcccagggtctgcccttggtctcagacacatttttccttgactgcagatt
cagtccctcagtgggtggtgaaagctgaacattctggaacagctaatctc
atgaattcatttcatcttacaagtcactttgactgagtcagctcagatga
agaggcagtagagtgcttct
gaattcatctttcaaataaatgctctggtttaaggtgtgtgcaggggtgg
ggaggagagctcctttggggaaaaatacataatttgtttttctcttgttg
aagaagagaatagtttctcggggaaatttactgaggttactgtgcatgtg
tcctgtaggacacaagcttccattgtatggtactagaagtagggctcagg
agaataatatctaagcccaactctgcctctacgggctatgagtgaactcc
attgtcttgcttcatctctctcggtctgaatatccttagcttggatgaag
ctgaccagggactttagtcgggtccccagaaagcagtagtttatgtttac
agctcacaatagtcttctctttcttgctttattacagttgttggattaaa
gacgatcacatcttttacatctccgtggtggcttatttttgcctcatatt
tctcatgaatctctccatgttctgcacggttctcgttcaattgacttctg
tgaaatcccaaagccagaagactcggaagaaaatgatcctgaatgacctc
aaaggcacaatcagtttgacatttctacttggcctcacctggggcttttg
cctttttttgcctggggacctgtgaggatcttcttcttgtatctttttgc
catttgtaatacattgcaaggtaattactgcatgttggcactttctatgg
ctagctagacatccaacaaaaaaaagcttttgttgttttggaaaataatc
ccacataccagaatttaaaggagagaaaaagaaaacaaaaacaaaaacca
aacttcaggaaatccctgttcccaaagagtcaacagtgatctttggaaaa
gcaagtagatgttagccttcattcagtgacacatggtgccccccctctta
cacataggtgggaatgaacattacaaataaagctagcacaattttctcta
gttgtgaatatgggatcccatctggctggcaggagttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_54357528_54358704
seq2: B6Ng01-118J09.b_43_1212 (reverse)

seq1  AGAAGCAACTCTACTGACTTCTTTCATCTGAGCCTGACTCAGTCAAGGTG  50
      |||||| ||||||||| ||   |||||||||| ||||||||||||| |||
seq2  AGAAGC-ACTCTACTGCCT--CTTCATCTGAG-CTGACTCAGTCAAAGTG  46

seq1  ACTTGGTAAGATG-AATGAATCCATGAGGATTAGCTGTTCCAG-ATGTTC  98
      |||| |||||||| ||||||| ||||| ||||||||||||||| ||||||
seq2  ACTT-GTAAGATGAAATGAATTCATGA-GATTAGCTGTTCCAGAATGTTC  94

seq1  AGCTTTCCACCACCCACTGAGGGGACTGATTCTGCAGTC-AGGGAAAATG  147
      |||||| ||||||||||||| |||||||| ||||||||| ||| ||||||
seq2  AGCTTT-CACCACCCACTGA-GGGACTGAATCTGCAGTCAAGGAAAAATG  142

seq1  TGTCTGAGGCCCAAGGGCAGGACCCTGGGCTCTACACTGAATTTGAAATT  197
      ||||||| | ||||||||| ||||||||||||||||||||||||||||||
seq2  TGTCTGA-GACCAAGGGCA-GACCCTGGGCTCTACACTGAATTTGAAATT  190

seq1  AGGAGCTTCAAAATGAGGACAGGCTGGGTAGAAATGCAAGCGCTTCACAA  247
      | ||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  AAGAGCTTCAAAATGAGAACAGGCTGAGTAGAAATGCAAGCGCTTCACAA  240

seq1  CCAAAGCTCAGGGTTCCAATTTCAGCTCTGATATTTACTAGTCTCAGATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCTCAGGGTTCCAATTTCAGCTCTGATATTTACTAGTCTCAGATA  290

seq1  CTCGCTTACAGTTTTTGAACTTCCCAGTTCCTTAGTTGCTTCGTTTTTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTCGCTTACAGTTTTTGAACTTCCCAGTTCCTTAGTTGCTTCGTTATTAA  340

seq1  GACAAGCATAAAACAGTAACCACACATAGGGGTTCTGTGGGACTTTAATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGCATAAAACAGTAACCACACATAGGGGTTCTGTGGGACTTTAATG  390

seq1  AAATAATATGTGTAAATGCTTAGAATAATACTTAGCTATAGTTGGCCATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATATGTGTAAATGCTTAGAATAATACTTAGCTATAGTTGGCCATT  440

seq1  GAAACAGTACTAAGTGACTCTGGAGTACAGCTCAGTGGTAGATTGTGTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGTACTAAGTGACTCTGGAGTACAGCTCAGTGGTAGATTGTGTGT  490

seq1  GTGTGTGTGTGTGTGTGTGTTTTCATGGTATTTTAAGTTACATCGATCAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTTTTCATGGTATTTTAAGTTACATCGATCAC  540

seq1  AGGGTATAATTTCAATAAGTTTGAAGATTAAACACAGGCCAAAATTAAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATAATTTCAATAAGTTTGAAGATTAAACACAGGCCAAAATTAAGT  590

seq1  CAAGTTTAAAATGAAATAAAAAGCATAAATAATTGATAGAATCATGTCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTAAAATGAAATAAAAAGCATAAATAATTGATAGAATCATGTCTC  640

seq1  TTATCTTAAAGAATTTTCTTTTGCAAGTGTTATCATAAGGTGGTTTATGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTAAAGAATTTTCTTTTGCAAGTGTTATCATAAGGTGGTTTATGA  690

seq1  AGTGCCTCCCTTAGATTTAAGGATGCAGTTCAAATCAAGGCTATGGACAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTCCCTTAGATTTAAGGATGCAGTTCAAATCAAGGCTATGGACAA  740

seq1  TCTGGCTCTAAGTAAGCATAGTGGGGTTTTGTTTCTTGTTTGTTTTTGGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCTAAGTAAGCATAGTGGGGTTTTGTTTCTTGTTTGTTTTTGGA  790

seq1  GGTTCCCCACATTGCATTTAACCAGGCAAAAGAACTGTGAAAAAAGTATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCCACATTGCATTTAACCAGGCAAAAGAACTGTGAAAAAAGTATG  840

seq1  ATAAAAAATACAATGGACATTACTTGCCAGTGATACGTATGATCCTGTAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAATACAATGGACATTACTTGCCAGTGATACGTATGATCCTGTAC  890

seq1  TAGAACCTTAGGAAGTACTTCTTTTTAATACATCCATTCAATATGAGTGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCTTAGGAAGTACTTCTTTTTAATACATCCATTCAATATGAGTGA  940

seq1  GGTAGAGCTCAGACAGGCTAAGGTACTGGTGAGCCAGGACTCCAACTTGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGCTCAGACAGGCTAAGGTACTGGTGAGCCAGGACTCCAACTTGG  990

seq1  GCTCACTCGATTTGAAAACCAGCTTCCTCACCATCACGCTTACCCTGTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTCGATTTGAAAACCAGCTTCCTCACCATCACGCTTACCCTGTTT  1040

seq1  TTCAGGAAGCCCATCTCCAAAGCGAAGAAGAGATGCCTACTATTATTAGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAAGCCCATCTCCAAAGCGAAGAAGAGATGCCTACTATTATTAGC  1090

seq1  CTCAGTTGGATGAAGAGAATTTGTGTGTGTGCGCACGCGCGCAGCCTGAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTGGATGAAGAGAATTTGTGTGTGTGCGCACGCGCGCAGCCTGAT  1140

seq1  ACTGCTTTTTCTCCCGTGGATCCAGAATTC  1177
      ||||||||||||||||||||||||||||||
seq2  ACTGCTTTTTCTCCCGTGGATCCAGAATTC  1170

seq1: chrX_54220910_54221894
seq2: B6Ng01-118J09.g_69_1056

seq1  GAATTCATCTTTCAAATAAATGCTCTGGTTTAAGGTGTGTGCAGGGGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTTCAAATAAATGCTCTGGTTTAAGGTGTGTGCAGGGGTGG  50

seq1  GGAGGAGAGCTCCTTTGGGGAAAAATACATAATTTGTTTTTCTCTTGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGAGCTCCTTTGGGGAAAAATACATAATTTGTTTTTCTCTTGTTG  100

seq1  AAGAAGAGAATAGTTTCTCGGGGAAATTTACTGAGGTTACTGTGCATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAGAATAGTTTCTCGGGGAAATTTACTGAGGTTACTGTGCATGTG  150

seq1  TCCTGTAGGACACAAGCTTCCATTGTATGGTACTAGAAGTAGGGCTCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAGGACACAAGCTTCCATTGTATGGTACTAGAAGTAGGGCTCAGG  200

seq1  AGAATAATATCTAAGCCCAACTCTGCCTCTACGGGCTATGAGTGAACTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAATATCTAAGCCCAACTCTGCCTCTACGGGCTATGAGTGAACTCC  250

seq1  ATTGTCTTGCTTCATCTCTCTCGGTCTGAATATCCTTAGCTTGGATGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTTGCTTCATCTCTCTCGGTCTGAATATCCTTAGCTTGGATGAAG  300

seq1  CTGACCAGGGACTTTAGTCGGGTCCCCAGAAAGCAGTAGTTTATGTTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCAGGGACTTTAGTCGGGTCCCCAGAAAGCAGTAGTTTATGTTTAC  350

seq1  AGCTCACAATAGTCTTCTCTTTCTTGCTTTATTACAGTTGTTGGATTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACAATAGTCTTCTCTTTCTTGCTTTATTACAGTTGTTGGATTAAA  400

seq1  GACGATCACATCTTTTACATCTCCGTGGTGGCTTATTTTTGCCTCATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGATCACATCTTTTACATCTCCGTGGTGGCTTATTTTTGCCTCATATT  450

seq1  TCTCATGAATCTCTCCATGTTCTGCACGGTTCTCGTTCAATTGACTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGAATCTCTCCATGTTCTGCACGGTTCTCGTTCAATTGACTTCTG  500

seq1  TGAAATCCCAAAGCCAGAAGACTCGGAAGAAAATGATCCTGAATGACCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCCCAAAGCCAGAAGACTCGGAAGAAAATGATCCTGAATGACCTC  550

seq1  AAAGGCACAATCAGTTTGACATTTCTACTTGGCCTCACCTGGGGC-TTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAGGCACAATCAGTTTGACATTTCTACTTGGCCTCACCTGGGGCTTTTG  600

seq1  CC-TTTTTTGCCTGGGGACCTGTGAGGATCTTCTTCTTGTATCTTTTTGC  648
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTTGCCTGGGGACCTGTGAGGATCTTCTTCTTGTATCTTTTTGC  650

seq1  CATTTGTAATACATTGCAAGGTAATTACTGCATGTTGGCACTTTCTATGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTAATACATTGCAAGGTAATTACTGCATGTTGGCACTTTCTATGG  700

seq1  CTAGCTAGACATCCAAC-AAAGAAAGC-TTTGTTGTTTTGGAAAATAATC  746
      ||||||||||||||||| ||| ||||| ||||||||||||||||||||||
seq2  CTAGCTAGACATCCAACAAAAAAAAGCTTTTGTTGTTTTGGAAAATAATC  750

seq1  CCACATACCAGAATTTAAAGGAGAGAAAAAGAAAACAAAAACAAAAACCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATACCAGAATTTAAAGGAGAGAAAAAGAAAACAAAAACAAAAACCA  800

seq1  AACTTCAGGAAATCCCTGCTCCCAAAGAGTCAACAAGTGATCTTTGGACA  846
      |||||||||||||||||| ||||||||||||||| ||||||||||||| |
seq2  AACTTCAGGAAATCCCTGTTCCCAAAGAGTCAAC-AGTGATCTTTGGA-A  848

seq1  TAGCAGTTAGATGTTAGCCTTCATTCAGTGACTACATGGTG-CCCCCCTC  895
       ||||  ||||||||||||||||||||||||| |||||||| ||||||||
seq2  AAGCAAGTAGATGTTAGCCTTCATTCAGTGAC-ACATGGTGCCCCCCCTC  897

seq1  TTACACATAGGT-GGAATGAACATTACAAAT-AAGCTAGCACAATTTTCT  943
      |||||||||||| |||||||||||||||||| ||||||||||||||||||
seq2  TTACACATAGGTGGGAATGAACATTACAAATAAAGCTAGCACAATTTTCT  947

seq1  CTAGTTGTGATATTGGTATCACATACTGCATGGCAGGAGTTC  985
      ||||||||||   ||| ||| ||| |||  ||||||||||||
seq2  CTAGTTGTGAATATGGGATCCCAT-CTGGCTGGCAGGAGTTC  988