BAC Information

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BAC

Clone NameB6Ng01-118M08
ChromosomeX (Build37)
Map Location 147,607,276 - 147,748,160
singlet/doubletdoublet
Overlap geneWnk3, LOC675278
Upstream geneEG546387, LOC333588, Tmem29, LOC100040101, Alas2, Apex2, Pfkfb1, Tro, LOC100039716, Maged2, Itih5l, LOC667021, Gnl3l, Fgd1, Tsr2, LOC100040221, EG667027
Downstream geneORF34, LOC623804, LOC100039760, Phf8, LOC385448, LOC237116, Huwe1, LOC675514, Hsd17b10, Ribc1, Smc1a, LOC100040394, Iqsec2, Jarid1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118M08.bB6Ng01-118M08.g
ACCDH923163DH923164
length1,1851,154
definitionDH923163|Mus musculus domesticus DNA, BAC clone: B6Ng01-118M08, 5' end.DH923164|Mus musculus domesticus DNA, BAC clone: B6Ng01-118M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,607,276 - 147,608,506)(147,746,978 - 147,748,160)
sequence
gaattcatggtatttttaatttaatttttatttttgggtttcatatatga
gtacaatattcatagttgttctgtaaatatcatgagattttttttttttt
tagaaaatgttgaagttgttgagagagacttattgaagaaatgagccttt
aatgctctttcagggatatataatccttctgaaactttttccctcttccc
ttctttccatataaactgttcccttcttgttgcccctccctctccttttt
ttttaaaaagaagttctgtgagttcaagaccagcctggtctacacagtag
gttttatttattttattttttaaatatttgttcatttatttattatatgt
aagtacagtgtagctgtcttcagacactccagaagagagcatcagatttc
gttacagatggttgtgagccaccatgtggttgctgggatttgaactcagg
acctttggaagagcaatcgatgctcttaaccactgtgccatcttaccagc
cccaggttttatttattatctatgtgtatgagtacactgtagctttcttc
agacacaccagaagagggcatgagggcatcggatctcattatggatggtt
gtgatggcgccaccatgtggttgctgggaattgaactcaggacctgtgga
agagcagtcagtgctcttaaccactgagccatctttccagaccctccctt
tcaccttttaagagaaactgtgtttgggattgaatccagggtcttctgtc
tgctacttaaacattctatgtagggaaagacatgcatccccactccatct
cctttaaaagtcttagaagaaatgaaatatatcttttgccatgttttagc
atgggttcttttaagtcgtgatgaaactcagttataaatttgtgatttta
aaattttattttgtgtgttacttgggattgaacctgtggctctacagatg
ccctgaaagcagtctgccactgacagtatcctcagccctcttttcttttg
agagtgtctcataagctgctagctgtcttgactcacttgtagctaggcag
actaattttgatctctactgcagtctcatgctgggatataggcctgagct
actagcttgctttacaattaaagtatggcttcggatagtactttactgta
ttgggcaagtcttattcccgggtttcatcaccttg
gaattcttctgtctcttcctacccagtgctggtagttatgcaagcaccac
acatactcagctttttcatatgggtcctaagtcctaaactcaagtcctca
tacttgcatgctaagtactttactgattaagctgccttcccagccctctg
ttcttctaaattaaactcaaaaccacaagacaattgtgttttgagcagta
ctgaaaagatatattcttgtttaatattgtgattaaatatatgaatagag
attagaatatattaataaagcacataggaataatgattccaatggatgta
aataattctcttaggagcctcaaatccttagttcaagctaaaactaaact
ttcaattacacttttgttagaaatttttaatgtaagttaggaaaacggtt
ttttttttaaagctttacttgaaaatgaatgacaatgtatgattagttac
aaaatattttacttaaagctgagcattttgtatcagtactttcttcctgg
aaaggtaaaattaaatgtaatgcttctgatttaaaatggtaatatagtgt
gctcacatttgaataaggtatttctatgcatccatttttgagtggtggga
tttgaaaatggtatcttaaaaattactttttttcattggttaagatctgt
aatgagtattattgttttaaaaacaatagtatgctttttaagagcctaaa
ttagagaggttgtaaatttactctttaatattcctaagatatctctgatt
caaatgcccaaacagggcaatcatcccctacactaccatatctgctcata
tgcacaatttcagtgatcagcatccaggaataatacacaaacagcagcca
ctactaatcaagtcatacagtcatccaattaccaaatcttttttcttaaa
tatcagctagcctactgtgactaactcctgattgtctggaaaacattggc
cctgatcccaccaaatctgtcttctgcttcagtcagtgctcttcttaaaa
caatgacagtgatcagctcatcctattatgacctgggcgcatagcatcat
ctttcttaaaagattcttcccagacccattgaaagcctcctcttcttagg
attcagtcattatacactttatcagaatcttccttacactcagtgcatgt
ggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_147607276_147608506
seq2: B6Ng01-118M08.b_43_1227

seq1  GAATTCATGGTATTTTTAATTTAATTTTTATTTTTGGGTTTCATATATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGTATTTTTAATTTAATTTTTATTTTTGGGTTTCATATATGA  50

seq1  GTACAATATTCATAGTTGTTCTGTAAATATCATGAGATTTTTTTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATATTCATAGTTGTTCTGTAAATATCATGAGATTTTTTTTTTTTT  100

seq1  TAGAAAATGTTGAAGTTGTTGAGAGAGACTTATTGAAGAAATGAGCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATGTTGAAGTTGTTGAGAGAGACTTATTGAAGAAATGAGCCTTT  150

seq1  AATGCTCTTTCAGGGATATATAATCCTTCTGAAACTTTTTCCCTCTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCTTTCAGGGATATATAATCCTTCTGAAACTTTTTCCCTCTTCCC  200

seq1  TTCTTTCCATATAAACTGTTCCCTTCTTGTTGCCCCTCCCTCTCCTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCATATAAACTGTTCCCTTCTTGTTGCCCCTCCCTCTCCTTTTT  250

seq1  TTTTAAAAAGAAGTTCTGTGAGTTCAAGACCAGCCTGGTCTACACAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAGAAGTTCTGTGAGTTCAAGACCAGCCTGGTCTACACAGTAG  300

seq1  GTTTTATTTATTTTATTTTTTAAATATTTGTTCATTTATTTATTATATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTATTTTATTTTTTAAATATTTGTTCATTTATTTATTATATGT  350

seq1  AAGTACAGTGTAGCTGTCTTCAGACACTCCAGAAGAGAGCATCAGATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAGTGTAGCTGTCTTCAGACACTCCAGAAGAGAGCATCAGATTTC  400

seq1  GTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGG  450

seq1  ACCTTTGGAAGAGCAATCGATGCTCTTAACCACTGTGCCATCTTACCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGGAAGAGCAATCGATGCTCTTAACCACTGTGCCATCTTACCAGC  500

seq1  CCCAGGTTTTATTTATTATCTATGTGTATGAGTACACTGTAGCTTTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTTTTATTTATTATCTATGTGTATGAGTACACTGTAGCTTTCTTC  550

seq1  AGACACACCAGAAGAGGGCATGAGGGCATCGGATCTCATTATGGATGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACCAGAAGAGGGCATGAGGGCATCGGATCTCATTATGGATGGTT  600

seq1  GTGATGGCGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTGTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGCGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTGTGGA  650

seq1  AGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTTTCCAGACCCTCCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTTTCCAGACCCTCCCTT  700

seq1  TCACCTTTTAAGAGAAACTGTGTTTGGGATTGAATCCAGGGTCTTCTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTTTAAGAGAAACTGTGTTTGGGATTGAATCCAGGGTCTTCTGTC  750

seq1  TGCTACTTAAACATTCTATGTAGGGAAAGACATGCATCCCCACTCCATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTTAAACATTCTATGTAGGGAAAGACATGCATCCCCACTCCATCT  800

seq1  CCTTTAAAAAGTCTTAGAAGAAATGAAATATATCTTTTGCCATGTTTTAG  850
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTT-AAAAGTCTTAGAAGAAATGAAATATATCTTTTGCCATGTTTTAG  849

seq1  CATGGGTTCTTTTAAGTCGTGATGAAACTCAGTTATAAATTTGTGATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTTCTTTTAAGTCGTGATGAAACTCAGTTATAAATTTGTGATTTT  899

seq1  AAAAATTTTATTTTGTGTGTTACTTGGGATTGAACCTGTTGGCTCTACAG  950
       ||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  -AAAATTTTATTTTGTGTGTTACTTGGGATTGAACCTG-TGGCTCTACAG  947

seq1  ATGCCCTGAAAGCAGTCTGCCACTGACCAGTATCCTCAGCCCTCTTTTCT  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  ATGCCCTGAAAGCAGTCTGCCACTGA-CAGTATCCTCAGCCCTCTTTTC-  995

seq1  TTTTGAGAGGTGTCTCAATAAGCTGCCTAGGCTGTCCTTGAACTCACTTT  1050
      |||||||| ||||||| |||||||| ||| ||||| |||| |||||| ||
seq2  TTTTGAGA-GTGTCTC-ATAAGCTG-CTA-GCTGT-CTTG-ACTCAC-TT  1038

seq1  GTAGCCTAGGCAGACCTTAAATTTTTGATCTTCCTACTGCAGTCTTCCAA  1100
      |||| ||||||||||  |||  |||||||||  ||||||||||||  || 
seq2  GTAG-CTAGGCAGAC--TAA--TTTTGATCT--CTACTGCAGTCT--CA-  1078

seq1  ATTGCTGGGATTATAGGCCTGAGCTACTAAGCCTGGTTTTAAACCATTTT  1150
        |||||||| ||||||||||||||||| ||| || |||   || |||  
seq2  --TGCTGGGA-TATAGGCCTGAGCTACT-AGCTTGCTTT---ACAATT--  1119

seq1  AAAAAGTATATGCCTTCGGAATTAAGTAACTTTACTGTATTTGGGGCAAG  1200
        ||||  |||| |||||||    ||| |||||||||||||  |||||||
seq2  --AAAG--TATGGCTTCGGA---TAGT-ACTTTACTGTATT--GGGCAAG  1159

seq1  TATCTAATTCCAAAATGTTTTCATCACCTTG  1231
        ||| |||||     | |||||||||||||
seq2  --TCTTATTCC---CGGGTTTCATCACCTTG  1185

seq1: chrX_147746978_147748160
seq2: B6Ng01-118M08.g_67_1220 (reverse)

seq1  CTCCACATGCAACTGTAAGTGGTTAAGGAAAGCATTTCTGATAAAGTG-A  49
      |||||||||| ||||  ||||  |||||||     ||||||||||||| |
seq2  CTCCACATGC-ACTG--AGTG--TAAGGAA---GATTCTGATAAAGTGTA  42

seq1  TAATTGAACTGAGATCTAAAGGAAGAGGAGGCTCTCAAATGTGGTCCTGG  99
      ||||   |||||   ||||  |||||||||||| ||||   |||  ||||
seq2  TAAT--GACTGAATCCTAA--GAAGAGGAGGCTTTCAA---TGGGTCTGG  85

seq1  GAAGGAATCCTGTTTTAAGAAAGATGGATTGCTATGGCGCCCCAGGTCAT  149
      ||| |||||   ||||||||||||||   |||||| ||| ||||||||| 
seq2  GAA-GAATC---TTTTAAGAAAGATG--ATGCTAT-GCG-CCCAGGTCA-  126

seq1  TAATAGGATGAAGCTTGAATCACTGTTCATTTGTTTTAAGAAGAGCACTG  199
      |||||||||| ||||   ||||||| ||| ||||||||||||||||||||
seq2  TAATAGGATG-AGCT--GATCACTG-TCA-TTGTTTTAAGAAGAGCACTG  171

seq1  ACTGAAGCAAGAAGACAGAATTTGGTGGGATCAGGGCCAATGTTTTCCAG  249
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  ACTGAAGC-AGAAGACAG-ATTTGGTGGGATCAGGGCCAATGTTTTCCAG  219

seq1  ACAATCAGGAGTTAGTCACAGTAGGCTAGCTGATATTTAAGAAAAAAGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCAGGAGTTAGTCACAGTAGGCTAGCTGATATTTAAGAAAAAAGAT  269

seq1  TTGGTAATTGGATGACTGTATGACTTGATTAGTAGTGGCTGCTGTTTGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAATTGGATGACTGTATGACTTGATTAGTAGTGGCTGCTGTTTGTG  319

seq1  TATTATTCCTGGATGCTGATCACTGAAATTGTGCATATGAGCAGATATGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTCCTGGATGCTGATCACTGAAATTGTGCATATGAGCAGATATGG  369

seq1  TAGTGTAGGGGATGATTG-CCTGTTTGGGCATTTGAATCAGAGATATCTT  448
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAGTGTAGGGGATGATTGCCCTGTTTGGGCATTTGAATCAGAGATATCTT  419

seq1  AGGAATATTAAAGAGTAAATTTACAACCTCTCTAATTTAGGCTCTTAAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATTAAAGAGTAAATTTACAACCTCTCTAATTTAGGCTCTTAAAA  469

seq1  AGCATACTATTGTTTTTAAAACAATAATACTCATTACAGATCTTAACCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACTATTGTTTTTAAAACAATAATACTCATTACAGATCTTAACCAA  519

seq1  TGAAAAAAAGTAATTTTTAAGATACCATTTTCAAATCCCACCACTCAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAAGTAATTTTTAAGATACCATTTTCAAATCCCACCACTCAAAA  569

seq1  ATGGATGCATAGAAATACCTTATTCAAATGTGAGCACACTATATTACCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGCATAGAAATACCTTATTCAAATGTGAGCACACTATATTACCAT  619

seq1  TTTAAATCAGAAGCATTACATTTAATTTTACCTTTCCAGGAAGAAAGTAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCAGAAGCATTACATTTAATTTTACCTTTCCAGGAAGAAAGTAC  669

seq1  TGATACAAAATGCTCAGCTTTAAGTAAAATATTTTGTAACTAATCATACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAAAATGCTCAGCTTTAAGTAAAATATTTTGTAACTAATCATACA  719

seq1  TTGTCATTCATTTTCAAGTAAAGCTTTAAAAAAAAAACCGTTTTCCTAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTCATTTTCAAGTAAAGCTTTAAAAAAAAAACCGTTTTCCTAAC  769

seq1  TTACATTAAAAATTTCTAACAAAAGTGTAATTGAAAGTTTAGTTTTAGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTAAAAATTTCTAACAAAAGTGTAATTGAAAGTTTAGTTTTAGCT  819

seq1  TGAACTAAGGATTTGAGGCTCCTAAGAGAATTATTTACATCCATTGGAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAAGGATTTGAGGCTCCTAAGAGAATTATTTACATCCATTGGAAT  869

seq1  CATTATTCCTATGTGCTTTATTAATATATTCTAATCTCTATTCATATATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTCCTATGTGCTTTATTAATATATTCTAATCTCTATTCATATATT  919

seq1  TAATCACAATATTAAACAAGAATATATCTTTTCAGTACTGCTCAAAACAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACAATATTAAACAAGAATATATCTTTTCAGTACTGCTCAAAACAC  969

seq1  AATTGTCTTGTGGTTTTGAGTTTAATTTAGAAGAACAGAGGGCTGGGAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCTTGTGGTTTTGAGTTTAATTTAGAAGAACAGAGGGCTGGGAAG  1019

seq1  GCAGCTTAATCAGTAAAGTACTTAGCATGCAAGTATGAGGACTTGAGTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTAATCAGTAAAGTACTTAGCATGCAAGTATGAGGACTTGAGTTT  1069

seq1  AGGACTTAGGACCCATATGAAAAAGCTGAGTATGTGTGGTGCTTGCATAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTAGGACCCATATGAAAAAGCTGAGTATGTGTGGTGCTTGCATAA  1119

seq1  CTACCAGCACTGGGTAGGAAGAGACAGAAGAATTC  1183
      |||||||||||||||||||||||||||||||||||
seq2  CTACCAGCACTGGGTAGGAAGAGACAGAAGAATTC  1154