BAC Information

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BAC

Clone NameB6Ng01-120K23
ChromosomeX (Build37)
Map Location 98,270,922 - 98,427,023
singlet/doubletdoublet
Overlap geneSlc7a3, Snx12
Upstream geneEda, Dgat2l4, Otud6a, Igbp1, LOC668257, Dgat2l3, LOC620734, P2ry4, Arr3, Pdzd11, Kif4, Gdpd2, Dlg3, Tex11, LOC668271, LOC100042392
Downstream geneMllt7, Gm614, Il2rg, Med12, Nlgn3, LOC100042407, Gjb1, Zmym3, Nono, Itgb1bp2, LOC620837, Taf1, Ogt, LOC620865, LOC668291, Cxcr3, LOC632454, LOC668302, EG212753, 8030474K03Rik, LOC668308, LOC100042465, H3f3a-ps1, EG621083, Rgag4, LOC100042480, LOC331476, Pin4, LOC670921, Ercc6l, LOC668318, Rps4x, LOC100043080
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120K23.bB6Ng01-120K23.g
ACCDH924567DH924568
length1,1621,086
definitionDH924567|Mus musculus domesticus DNA, BAC clone: B6Ng01-120K23, 5' end.DH924568|Mus musculus domesticus DNA, BAC clone: B6Ng01-120K23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,270,922 - 98,272,100)(98,425,943 - 98,427,023)
sequence
gaattcctctctctagttctttgaggtgttggaaaatacagttaaactaa
agtgctaccgaacaagcagtaggactcattcttcctatgtaactgtgtgt
ggggtatcattatccaactccatctgcccagcccagcactcacctgctgc
cacactccccacagggcttgccataatggaatctgctcctccttacgttt
tcactttactcattcaaaaaatcctgggctgtgggcaaactgaacattaa
gctttcccatcttgttgcttttatgcacaaatttccctcccaatttccaa
attgacacgtttttaccccttttgattgttttaagaagtgtctcttattg
cccaggctgacctcaaactcactagccaaaaatgacccagaactcctacc
tttcctgcccccaccccctaaatgttgagatggtacacctatattaccac
atttggttcattttacaggtcgttttttttttttaagatttatttattat
tatatgtaagtacactgtagctgtcttcagacacaccagaagagggcatc
agatttcattacacatggttgtgagccaccatgtggttgctgggatttga
actcaggacctttggaggagcagtctctccagccccttacaggtcatttt
taaacctcagaaaaagccttaacttcaacaaagccttcctcaaaccacct
gagacctaacgtgaaatttcatggtaattcatgcacacctgtctggggag
acttctgacttcctactttctgtctttttgtttatttaggtcagctttat
ctgtcatctcataaaatcaagattaaagcattcctaagacaattttccat
gccgtcttcaagagattattcactatgttagctacatgaatgttcccagt
atatgatatgtgattattttaggtactgcacagtcgaacatttttaaaca
gttgattaactattttagtgtatatagaaagtacccccttttccatttta
gatattataaaatattttctttgaaaatagcatattttgcaggcagtgct
gaatcctctaattccagcactcaggaggcagaggcgatctcttgagtcag
ccagtctcaggcatctaaggagtaattcagacgtcagactaccaggaaac
cttgtctcaaaa
gaattcagagatttttaaaaggtgatttctctttgcccatctcccttggt
aactcggcctctcaggaaaacaacaacatcaacaacaaaaaaccccaagg
tctatgtatctgtgtgcctttgtgtatgtatgggacccagctgctaacag
ctgtcatcatcttatttattacaacaaaaggtttaattagtttagtgccc
tttactcttctcttttaccccataaaacttttctcttaaaaaaaaaaaaa
aaagaaaagaccatgctagtcagacaggatggtacatgcttgctatccca
gcacttggaaggctggagtaacaggatcacgagtttgaggctggcctggg
ctatatagtaagatctcttctcaaacaataacaaaatcatgcaaaaagaa
aacaagaagaaagacatgtaagttcttccactggctggtacctggtctgc
cagcatgggtttcctgggaaatttttaattctttggggtctattgtttca
gtagtctcataggatagatgtctcttttgaatatcttttcccatgccagg
agactcatgatttttctctctgatttttttttctttttgatacagagtct
ctctatgtatccctggctgtcctgaaacttgtgtaggctaagttggcctt
gcctctgcctcctgagtgctgggaccaaaggagtgcacaatgcttgcctg
acttatctctgtttttttgtcccttactcttgagagatttggggagatat
actagacttgaaaattcatgaaatatgcatgtccctggaacaattaaaaa
cagtatcaggaagagatttcatgatgttctgacacttattagatgccccc
ccccttttttaaaggacagagtgagctaaggcaatgttggggtctgtgat
agaaaggagtgagcattgaccagactgcttagttatgttatacatcaagt
cagtacctctgaagaacagacttgggggagttccagctagaaacgaccaa
tgcatcagtaatttctaccctatttatggctcttaacttacataattggc
caaggttaattatattttaagccttatctctttgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_98270922_98272100
seq2: B6Ng01-120K23.b_49_1210

seq1  GAATTCCTCTCTCTAGTTCTTTGAGGTGTTGGAAAATACAGTTAAACTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTCTCTAGTTCTTTGAGGTGTTGGAAAATACAGTTAAACTAA  50

seq1  AGTGCTACCGAACAAGCAGTAGGACTCATTCTTCCTATGTAACTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTACCGAACAAGCAGTAGGACTCATTCTTCCTATGTAACTGTGTGT  100

seq1  GGGGTATCATTATCCAACTCCATCTGCCCAGCCCAGCACTCACCTGCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTATCATTATCCAACTCCATCTGCCCAGCCCAGCACTCACCTGCTGC  150

seq1  CACACTCCCCACAGGGCTTGCCATAATGGAATCTGCTCCTCCTTACGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCCCCACAGGGCTTGCCATAATGGAATCTGCTCCTCCTTACGTTT  200

seq1  TCACTTTACTCATTCAAAAAATCCTGGGCTGTGGGCAAACTGAACATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTACTCATTCAAAAAATCCTGGGCTGTGGGCAAACTGAACATTAA  250

seq1  GCTTTCCCATCTTGTTGCTTTTATGCACAAATTTCCCTCCCAATTTCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCCATCTTGTTGCTTTTATGCACAAATTTCCCTCCCAATTTCCAA  300

seq1  ATTGACACGTTTTTACCCCTTTTGATTGTTTTAAGAAGTGTCTCTTATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACACGTTTTTACCCCTTTTGATTGTTTTAAGAAGTGTCTCTTATTG  350

seq1  CCCAGGCTGACCTCAAACTCACTAGCCAAAAATGACCCAGAACTCCTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTGACCTCAAACTCACTAGCCAAAAATGACCCAGAACTCCTACC  400

seq1  TTTCCTGCCCCCACCCCCTAAATGTTGAGATGGTACACCTATATTACCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGCCCCCACCCCCTAAATGTTGAGATGGTACACCTATATTACCAC  450

seq1  ATTTGGTTCATTTTACAGGTCGTTTTTTTTTTTTAAGATTTATTTATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTTCATTTTACAGGTCGTTTTTTTTTTTTAAGATTTATTTATTAT  500

seq1  TATATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATC  550

seq1  AGATTTCATTACACATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCATTACACATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGA  600

seq1  ACTCAGGACCTTTGGAGGAGCAGTCTCTCCAGCCCCTTACAGGTCATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGACCTTTGGAGGAGCAGTCTCTCCAGCCCCTTACAGGTCATTTT  650

seq1  TAAACCTCAGAAAAAGCCTTAACTTCAACAAAGCCTTCCTCAAACCACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTCAGAAAAAGCCTTAACTTCAACAAAGCCTTCCTCAAACCACCT  700

seq1  GAGACCTAACGTGAAATTTCATGGTAATTCATGCACACCTGTCTGGGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTAACGTGAAATTTCATGGTAATTCATGCACACCTGTCTGGGGAG  750

seq1  ACTTCTGACTTCCTACTTTCTGTCTTTTTGTTTATTTAGGTCAGCTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGACTTCCTACTTTCTGTCTTTTTGTTTATTTAGGTCAGCTTTAT  800

seq1  CTGTCATCTCATAAAATCAAGATTAAAGCATTCCTAAGACAATTTTCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATCTCATAAAATCAAGATTAAAGCATTCCTAAGACAATTTTCCAT  850

seq1  GCCGTCTTCAAGAGATTATTCACTATGTTAGCTACATGAATGTTTCCAGT  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCCGTCTTCAAGAGATTATTCACTATGTTAGCTACATGAATGTTCCCAGT  900

seq1  ATATGATATGTGATTATTTTAGGTACTGCACAGTCAAACATTTTTAAACA  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATATGATATGTGATTATTTTAGGTACTGCACAGTCGAACATTTTTAAACA  950

seq1  GTTGATTAACTATTTTAGTGTATATTAGGAAAGTACCCCCTTTTCCATTT  1000
      |||||||||||||||||||||||||   ||||||||||||||||||||||
seq2  GTTGATTAACTATTTTAGTGTATAT--AGAAAGTACCCCCTTTTCCATTT  998

seq1  TAGATATTAGTAAAAATATTTTCTTTTGAAAATAAGCATATTTGCCAGGC  1050
      |||||||||   ||||||||||| ||||||||| |||||||||  |||||
seq2  TAGATATTA--TAAAATATTTTC-TTTGAAAAT-AGCATATTTTGCAGGC  1044

seq1  AGTGGTGAATACCTCTAATTCCAGCACTCAGGAGGCAGAGGCAGATCTC-  1099
      |||| ||||| ||||||||||||||||||||||||||||||| |||||| 
seq2  AGTGCTGAAT-CCTCTAATTCCAGCACTCAGGAGGCAGAGGC-GATCTCT  1092

seq1  TGAGTTCGAGGCCAGTCTCAGGCATCTAAAGAGTAAATTCAAGGACAGCC  1149
      |||||     ||||||||||||||||||| |||| ||||||  ||| | |
seq2  TGAGT---CAGCCAGTCTCAGGCATCTAAGGAGT-AATTCA--GAC-GTC  1135

seq1  AGGACTACCCAGAGAAACCTTGTCTCAAAA  1179
      | ||||| |||| |||||||||||||||||
seq2  A-GACTA-CCAG-GAAACCTTGTCTCAAAA  1162

seq1: chrX_98425943_98427023
seq2: B6Ng01-120K23.g_67_1152 (reverse)

seq1  AGCAAAGAGATAAGGCTTAAAATCATATAACCCTAGGACAATTATGTAAG  50
      |||||||||||||||||||||||   || | ||| || ||||||||||||
seq2  AGCAAAGAGATAAGGCTTAAAATATAATTAACCTTGGCCAATTATGTAAG  50

seq1  TTAA-AGTCAT-AATAAGGTAGAAATAACTGATGCA-TGGTCGTTTCTTG  97
      |||| || ||| |||| ||||||||| ||||||||| ||||||||||| |
seq2  TTAAGAGCCATAAATAGGGTAGAAATTACTGATGCATTGGTCGTTTCTAG  100

seq1  CTGG-ACT-CCCCAAGTCTG-TCTTCAGA-GTACTGACTTGATGTAT-AC  142
      |||| ||| ||||||||||| |||||||| ||||||||||||||||| ||
seq2  CTGGAACTCCCCCAAGTCTGTTCTTCAGAGGTACTGACTTGATGTATAAC  150

seq1  ATAACTAAGCAGTCCTGGTCAATGCTCACTCCTGTCTATCACAGACCCCA  192
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  ATAACTAAGCAGT-CTGGTCAATGCTCACTCCTTTCTATCACAGACCCCA  199

seq1  ACATTGCCTTAGCTCCACTCTGTCCTTTAAAAAAGGGGGGGGGCATCTAA  242
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACATTGCCTTAGCT-CACTCTGTCCTTTAAAAAAGGGGGGGGGCATCTAA  248

seq1  TAAGTTGTCAGAACATCATGAAATCTCTTCCTGATACTGTTTTTAATTGT  292
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAG-TGTCAGAACATCATGAAATCTCTTCCTGATACTGTTTTTAATTGT  297

seq1  TCCAGGGACATGCATATTTCATGAATTTTCAAGTCTAGTATATCTCCCCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGACATGCATATTTCATGAATTTTCAAGTCTAGTATATCTCCCCA  347

seq1  AATCTCTCAAGAGTAAGGGACAAAAAAACAGAGATAAGTCAGGCAAGCAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTCAAGAGTAAGGGACAAAAAAACAGAGATAAGTCAGGCAAGCAT  397

seq1  TGTGCACTCCTTTGGTCCCAGCACTCAGGAGGCAGAGGCAAGGCCAACTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACTCCTTTGGTCCCAGCACTCAGGAGGCAGAGGCAAGGCCAACTT  447

seq1  AGCCTACACAAGTTTCAGGACAGCCAGGGATACATAGAGAGACTCTGTAT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACACAAGTTTCAGGACAGCCAGGGATACATAGAGAGACTCTGTAT  497

seq1  CAAAAAGAAAAAAAAATCAGAGAGAAAAATCATGAGTCTCCTGGCATGGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGAAAAAAAAATCAGAGAGAAAAATCATGAGTCTCCTGGCATGGG  547

seq1  AAAAGATATTCAAAAGAGACATCTATCCTATGAGACTACTGAAACAATAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATATTCAAAAGAGACATCTATCCTATGAGACTACTGAAACAATAG  597

seq1  ACCCCAAAGAATTAAAAATTTCCCAGGAAACCCATGCTGGCAGACCAGGT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAAGAATTAAAAATTTCCCAGGAAACCCATGCTGGCAGACCAGGT  647

seq1  ACCAGCCAGTGGAAGAACTTACATGTCTTTCTTCTTGTTTTCTTTTTGCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCAGTGGAAGAACTTACATGTCTTTCTTCTTGTTTTCTTTTTGCA  697

seq1  TGATTTTGTTATTGTTTGAGAAGAGATCTTACTATATAGCCCAGGCCAGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGTTATTGTTTGAGAAGAGATCTTACTATATAGCCCAGGCCAGC  747

seq1  CTCAAACTCGTGATCCTGTTACTCCAGCCTTCCAAGTGCTGGGATAGCAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACTCGTGATCCTGTTACTCCAGCCTTCCAAGTGCTGGGATAGCAA  797

seq1  GCATGTACCATCCTGTCTGACTAGCATGGTCTTTTCTTTTTTTTTTTTTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTACCATCCTGTCTGACTAGCATGGTCTTTTCTTTTTTTTTTTTTT  847

seq1  TTAAGAGAAAAGTTTTATGGGGTAAAAGAGAAGAGTAAAGGGCACTAAAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGAAAAGTTTTATGGGGTAAAAGAGAAGAGTAAAGGGCACTAAAC  897

seq1  TAATTAAACCTTTTGTTGTAATAAATAAGATGATGACAGCTGTTAGCAGC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAACCTTTTGTTGTAATAAATAAGATGATGACAGCTGTTAGCAGC  947

seq1  TGGGTCCCATACATACACAAAGGCACACAGATACATAGACCTTGGGGTTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCCATACATACACAAAGGCACACAGATACATAGACCTTGGGGTTT  997

seq1  TTTGTTGTTGATGTTGTTGTTTTCCTGAGAGGCCGAGTTACCAAGGGAGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTTGATGTTGTTGTTTTCCTGAGAGGCCGAGTTACCAAGGGAGA  1047

seq1  TGGGCAAAGAGAAATCACCTTTTAAAAATCTCTGAATTC  1081
      |||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAAAGAGAAATCACCTTTTAAAAATCTCTGAATTC  1086