BAC Information

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BAC

Clone NameB6Ng01-121E03
ChromosomeX (Build37)8 (Build37)
Map Location 71,741,391 - 71,741,76255,768,357 - 55,769,485
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAtp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484
Downstream geneLOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437, EG667446, LOC669291, Gab3, Dkc1, Mpp1, EG547412, 4930428E23Rik, EG667190, F8, LOC572559, LOC667218, Fundc2, Mtcp1, Brcc3, LOC667496
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121E03.bB6Ng01-121E03.g
ACCDH924987DH924988
length1,1431,116
definitionDH924987|Mus musculus domesticus DNA, BAC clone: B6Ng01-121E03, 5' end.DH924988|Mus musculus domesticus DNA, BAC clone: B6Ng01-121E03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(71,741,391 - 71,741,762)(55,768,357 - 55,769,485)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtacccaagagctaaaggatcttcaccctata
gtggacacatatgactaccagtaccctgagctctgactctagctgcatat
gtatcaaagatgctagtcggcatcactggaagagaggccattgaaaccgc
agactttgtgtgccgtacaggacgccaaggccaagaagaggag
gaattcttgtttataatgaaatgtctttattttttaatttcacttcataa
tgattcttagtttacagtattatatttaatgcaaactagaaaaataagtc
aggaggtctatcaacaacagagtatctgaaagatactattcaaaaatgac
aatattagtttgtgattcattacatttttagtttttttgctaatatacat
ggaccctttcagaaaaatatgaaagaacagaattatgaggtctaaatctt
tccaagatatgaaaatctgttacaataaaataaaaaaattaatacagata
gaaaaaaatagaaacaatgtgctggtttggcatacatcatccaccactgc
taatttttctaaatcatttttaaatccctgaaatgttctgtttctacaga
aaggtttatatttacaaaaatacttggggttcaaatatagtcacttttat
ttatcaatacaccctgaattagaaaataaaacattaatttgaagagtgat
agttaattttttatctttgtatgatgaaacataggtttaagtgcgaagga
aatgatcatcctagatcaaaacatgtgtttatgtatgcctgcatgtgtat
atgtgtattaggtggatgggtgtgcatgtgcgtgtcagtgtctgagtata
tgctagtgcaagagcttgtagaggttagaaggttagaaggtttcagatat
cctgaagctggagttacatgtagtgtgtgctaattgacatgggtactgaa
aactgcaaagtcctctggaagaacagcaagctctctcctaacgattaagc
ccaatcatagatttttttattttatcaaagccccatgattgactatataa
ttgtcagtggtgatctctagaacatatatatgcatccaacattgaatggg
cttagcagattgtattatgttcattcttttatgtatatctataatataat
tataaaacagaggggttcaatgaatttgcaggggtcagacatccgaggat
agaagaaattagttctattttaattgagaaaatattcctcagctacaggt
ttttcagtcacgagatgacacacctacagctatcattatgttcatgcgaa
cctaaacaagtcaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_71741391_71741762
seq2: B6Ng01-121E03.b_1064_1190 (reverse)

seq1  CTCCTCTTCTTGGCCTAGCACTTGTCACCAGCCAATGCCAAACTTTTAAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAAGAGATTTATTTATTTATGTACCTATATATTTTATTTTATTATTTTAT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTTTACAGACATTGCATCTTTAATTTTTTAAAAAATATTTTTTATTA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTACGTATTTTCCTCAATTACATTTAGAATGCTATCCCAAAAGTCCCCCA  200
                                                        
seq2  --------------------------------------------------  0

seq1  TACCCTCCCCCCCACTTCCCTACCCACCCACTCCCACTTTTTGGCCCTGG  250
                                    || || ||| |||||| |||
seq2  ------------------------------CT-CCTCTTCTTGGCCTTGG  19

seq1  TGTTCCCCTGTACTGGGGCATATAAAGTTTGCCTGTCCAATGGGCCTCTC  300
       ||   |||||||   |||| | ||||| |||   | |||| ||||||||
seq2  CGT---CCTGTAC---GGCACACAAAGTCTGCGGTTTCAAT-GGCCTCTC  62

seq1  TTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGTAGCTAGAG  350
       |||||||||| |||||||||  |||| ||||||||||||| ||||||||
seq2  -TTCCAGTGAT-GCCGACTAG--CATC-TTTGATACATATGCAGCTAGAG  107

seq1  TCAAGAGCTCCGGGGTACTGGT  372
      || |||||| | ||||||||||
seq2  TC-AGAGCT-CAGGGTACTGGT  127

seq1: chr8_55768357_55769485
seq2: B6Ng01-121E03.g_64_1179

seq1  GAATTCTTGTTTATAATGAAATGTCTTTATTTTTTAATTTCACTTCATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTTATAATGAAATGTCTTTATTTTTTAATTTCACTTCATAA  50

seq1  TGATTCTTAGTTTACAGTATTATATTTAATGCAAACTAGAAAAATAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTTAGTTTACAGTATTATATTTAATGCAAACTAGAAAAATAAGTC  100

seq1  AGGAGGTCTATCAACAACAGAGTATCTGAAAGATACTATTCAAAAATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTCTATCAACAACAGAGTATCTGAAAGATACTATTCAAAAATGAC  150

seq1  AATATTAGTTTGTGATTCATTACATTTTTAGTTTTTTTGCTAATATACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAGTTTGTGATTCATTACATTTTTAGTTTTTTTGCTAATATACAT  200

seq1  GGACCCTTTCAGAAAAATATGAAAGAACAGAATTATGAGGTCTAAATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTTTCAGAAAAATATGAAAGAACAGAATTATGAGGTCTAAATCTT  250

seq1  TCCAAGATATGAAAATCTGTTACAATAAAATAAAAAAATTAATACAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGATATGAAAATCTGTTACAATAAAATAAAAAAATTAATACAGATA  300

seq1  GAAAAAAATAGAAACAATGTGCTGGTTTGGCATACATCATCCACCACTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATAGAAACAATGTGCTGGTTTGGCATACATCATCCACCACTGC  350

seq1  TAATTTTTCTAAATCATTTTTAAATCCCTGAAATGTTCTGTTTCTACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTCTAAATCATTTTTAAATCCCTGAAATGTTCTGTTTCTACAGA  400

seq1  AAGGTTTATATTTACAAAAATACTTGGGGTTCAAATATAGTCACTTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTATATTTACAAAAATACTTGGGGTTCAAATATAGTCACTTTTAT  450

seq1  TTATCAATACACCCTGAATTAGAAAATAAAACATTAATTTGAAGAGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAATACACCCTGAATTAGAAAATAAAACATTAATTTGAAGAGTGAT  500

seq1  AGTTAATTTTTTATCTTTGTATGATGAAACATAGGTTTAAGTGCGAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATTTTTTATCTTTGTATGATGAAACATAGGTTTAAGTGCGAAGGA  550

seq1  AATGATCATCCTAGATCAAAACATGTGTTTATGTATGCCTGCATGTGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCATCCTAGATCAAAACATGTGTTTATGTATGCCTGCATGTGTAT  600

seq1  ATGTGTATTAGGTGGATGGGTGTGCATGTGCGTGTCAGTGTCTGAGTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATTAGGTGGATGGGTGTGCATGTGCGTGTCAGTGTCTGAGTATA  650

seq1  TGCTAGTGCAAGAGCTTGTAGAGGTTAGAAGGTTAGAAGGTTTCAGATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTGCAAGAGCTTGTAGAGGTTAGAAGGTTAGAAGGTTTCAGATAT  700

seq1  CCTGAAGCTGGAGTTACATGTAGTGTGTGCTAATTGACATGGGTACTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGCTGGAGTTACATGTAGTGTGTGCTAATTGACATGGGTACTGAA  750

seq1  AACTGCAAAGTCCTCTGGAAGAACAGCAAGCTCTCTCCTAACGATTAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAAAGTCCTCTGGAAGAACAGCAAGCTCTCTCCTAACGATTAAGC  800

seq1  CCAATCATAGATTTTTTTATTTTATCAAAAGCCCCATGATTGACTATATA  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCAATCATAGATTTTTTTATTTTATC-AAAGCCCCATGATTGACTATATA  849

seq1  ATTGTCAGTGGTGATCCCTAGAAACATATATATGCATCCAACATTGAATG  900
      |||||||||||||||| |||| ||||||||||||||||||||||||||||
seq2  ATTGTCAGTGGTGATCTCTAG-AACATATATATGCATCCAACATTGAATG  898

seq1  GGCTTAGCAGATTGTATTTATGTTCATTCTTTTATGTATATCTATAATAA  950
      |||||||||||||||| ||||||||||||||||||||||||||||||| |
seq2  GGCTTAGCAGATTGTA-TTATGTTCATTCTTTTATGTATATCTATAAT-A  946

seq1  TAATTATTAAAACAGAGGGG-TCAATGAATTTGCAGGGGTCAGACATCCG  999
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  TAATTA-TAAAACAGAGGGGTTCAATGAATTTGCAGGGGTCAGACATCCG  995

seq1  AGGAATAGAAGAAATTAGTTCTATTTTAATTGGAGAAAAATATTCCTCAG  1049
      ||| ||||||||||||||||||||||||||| ||| ||||||||||||||
seq2  AGG-ATAGAAGAAATTAGTTCTATTTTAATT-GAG-AAAATATTCCTCAG  1042

seq1  CCTACAGTTTTTCCAGTCACAATATGGACACACTACCAGCTATGCAATAT  1099
       |||||| |||| ||||||| | || |||||||   ||||||| || |||
seq2  -CTACAGGTTTTTCAGTCACGAGAT-GACACACCTACAGCTAT-CATTAT  1089

seq1  GTTCATGGCAGACCTAACACAAAGTCAATT  1129
      |||||| ||  |||||| || |||||||||
seq2  GTTCAT-GCGAACCTAA-AC-AAGTCAATT  1116