BAC Information

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BAC

Clone NameB6Ng01-122O20
Chromosome1 (Build37)X (Build37)
Map Location 6,743,351 - 6,744,436111,460,438 - 111,460,766
singlet/doubletsingletsinglet
Overlap geneSt18
Upstream geneNpbwr1, 4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946
Downstream geneLOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302, LOC665063, LOC665069, LOC100039408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122O20.bB6Ng01-122O20.g
ACCDH926230DH926231
length1,075960
definitionDH926230|Mus musculus domesticus DNA, BAC clone: B6Ng01-122O20, 5' end.DH926231|Mus musculus domesticus DNA, BAC clone: B6Ng01-122O20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,743,351 - 6,744,436)(111,460,438 - 111,460,766)
sequence
gaattcactaagcaaatgtccatcgtctttactggagtcttctcaggaac
catgcaatgtcatagacactatactgcttaatatcccttcatcatgacgt
atctatgtgaagtccatattaccaatttacacacaaacacagggcagtcc
agtacaatcactaccagcttctttaccacacagttgacaagttgttgaca
tagcagcctctgcttttttatggttgctaagcttctgcagcagagaccca
ggctactgccctctctgatagtctgttattcttaccctagctcatgttca
ctcaggctcactgaaagagttaataaaacatgcattcctttgttttttaa
gtgagacaactactatatttatagaaatgtgatatgttgaatttttgaga
aggagaagtgttagaaaatggaagataaggtcactgtctatcaataatta
tcatttatatcctaaaataaataatcgtacagggatgttttggtctccca
aaattttgtttcattcagaaatagaatagtcttcccaggatttatattac
tagctgtaaaatatttcttacctattggttggctttctctattacttttc
tattacttctttaacaaatattaataagagtaatagctttaaagaaagac
ctgttattattctatagttgtggaagccctggggtctttttatggtctta
tcagtgtgaaaccaagtcaggctaagctgtaagggatttatcaatttcct
caccaagctagcttgattgagttcagttccttattcttgacaacatggac
ctgcaaaatgacaatgagagtcattcctgcctctagaggttgatgttttc
cttaactatgcccccttcatcttcaaagctggcaatgtggtttgattgaa
cattatccaagtacagctccctgagtaattctactgccttttctatagaa
ccatgggtagtctatcttctttatattccaggatattcttcccatctcaa
agttttactgactcatacccactttgttattgtagaaacatgctccacat
ttcagacttcttcggaggaggcagt
gaattctttccctgattttttcctcagcacattagttattggtagatatg
gaggctagtaacttttacatgttaattctatatcatgccacttttttgat
agtgtccggtgttttttttaattagatattttctttatttacatttcaga
tgttatcccctttcctagtttcccctccaaaaatctcctatcttctcccc
ctccccaacacctgctctgcaacccacccactcctatctcctgaccctag
cattaccctatactggggcatagaaccttcacaggaccaagggtctctct
tctcagtgatgatcaactaggccatcctaagctacatatgcagctagagc
catgtatctctctgtgtgttttctttgattggtggtttagtcccaagaag
ctctggggttactggttagtttatattgttgttccacttagggggctgca
aaaacctttagctccttggttactttctctagctccttcagtgaggaccc
tgtgctccatccaatggatgactgtgagcatccacttctgttttagtcag
gcactggcagatcctcacaggagatagctatatcaggctcctctcagcaa
gctcttgttggcatctgcaataatgtctcagtttggtgattgtttatggg
atggatcccaggtggggcagtttctggagggtcatgccttaaggctctgc
tctgaagtttgtctctgtaactccatccatgggtattttgttcccccttc
taagacagatcaaagtatccacactttggtcttccttcttctagagtttc
atgtgttttccaaattgtaccttggttgttctgagcttttccctaatatt
cacttatcagtgagtgcatatcatgtgtgttcatttgttattgggttatc
tcactcaggatgatatcctccagatccatccatttctctagatttcatga
ttcattgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_6743351_6744436
seq2: B6Ng01-122O20.b_48_1122 (reverse)

seq1  ACTGCCTCCCTCCCAAAGAAGGTCCTGAAATTGGTGAGCATGTTTCCCTA  50
      |||||||||   || ||||||   |||||| ||  ||||||||||  |||
seq2  ACTGCCTCC--TCCGAAGAAG--TCTGAAA-TGTGGAGCATGTTT--CTA  43

seq1  C-ATAACAAAGTGGGTATGAGTCAGTTAAAAACTTTGAGATGGGAAGAAT  99
      | ||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  CAATAACAAAGTGGGTATGAGTCAGT--AAAACTTTGAGATGGGAAGAAT  91

seq1  ATCCTGGAATATAAAGGAAGGATAGACTACCCATGGTTCTTATAGAAAAG  149
      ||||||||||||||||  | ||||||||||||||||||| ||||||||||
seq2  ATCCTGGAATATAAAG--AAGATAGACTACCCATGGTTC-TATAGAAAAG  138

seq1  GCAGTAGAATTACTCAGGGAGCTGTACTTGGATAATGTTCAATCAAACCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGAATTACTCAGGGAGCTGTACTTGGATAATGTTCAATCAAACCA  188

seq1  CATTGCCAGCTTTGAAGATGAAGGGGGCATAGTTAAGGAAAACATCAACC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCAGCTTTGAAGATGAAGGGGGCATAGTTAAGGAAAACATCAACC  238

seq1  TCTAGAGGCAGGAATGACTCTCATTGTCATTTTGCAGGTCCATGTTGTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGGCAGGAATGACTCTCATTGTCATTTTGCAGGTCCATGTTGTCA  288

seq1  AGAATAAGGAACTGAACTCAATCAAGCTAGCTTGGTGAGGAAATTGATAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGGAACTGAACTCAATCAAGCTAGCTTGGTGAGGAAATTGATAA  338

seq1  ATCCCTTACAGCTTAGCCTGACTTGGTTTCACACTGATAAGACCATAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTACAGCTTAGCCTGACTTGGTTTCACACTGATAAGACCATAAAA  388

seq1  AGACCCCAGGGCTTCCACAACTATAGAATAATAACAGGTCTTTCTTTAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCAGGGCTTCCACAACTATAGAATAATAACAGGTCTTTCTTTAAA  438

seq1  GCTATTACTCTTATTAATATTTGTTAAAGAAGTAATAGAAAAGTAATAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTACTCTTATTAATATTTGTTAAAGAAGTAATAGAAAAGTAATAGA  488

seq1  GAAAGCCAACCAATAGGTAAGAAATATTTTACAGCTAGTAATATAAATCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCAACCAATAGGTAAGAAATATTTTACAGCTAGTAATATAAATCC  538

seq1  TGGGAAGACTATTCTATTTCTGAATGAAACAAAATTTTGGGAGACCAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGACTATTCTATTTCTGAATGAAACAAAATTTTGGGAGACCAAAA  588

seq1  CATCCCTGTACGATTATTTATTTTAGGATATAAATGATAATTATTGATAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTGTACGATTATTTATTTTAGGATATAAATGATAATTATTGATAG  638

seq1  ACAGTGACCTTATCTTCCATTTTCTAACACTTCTCCTTCTCAAAAATTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGACCTTATCTTCCATTTTCTAACACTTCTCCTTCTCAAAAATTCA  688

seq1  ACATATCACATTTCTATAAATATAGTAGTTGTCTCACTTAAAAAACAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCACATTTCTATAAATATAGTAGTTGTCTCACTTAAAAAACAAAG  738

seq1  GAATGCATGTTTTATTAACTCTTTCAGTGAGCCTGAGTGAACATGAGCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCATGTTTTATTAACTCTTTCAGTGAGCCTGAGTGAACATGAGCTA  788

seq1  GGGTAAGAATAACAGACTATCAGAGAGGGCAGTAGCCTGGGTCTCTGCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGAATAACAGACTATCAGAGAGGGCAGTAGCCTGGGTCTCTGCTG  838

seq1  CAGAAGCTTAGCAACCATAAAAAAGCAGAGGCTGCTATGTCAACAACTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCTTAGCAACCATAAAAAAGCAGAGGCTGCTATGTCAACAACTTG  888

seq1  TCAACTGTGTGGTAAAGAAGCTGGTAGTGATTGTACTGGACTGCCCTGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGTGTGGTAAAGAAGCTGGTAGTGATTGTACTGGACTGCCCTGTG  938

seq1  TTTGTGTGTAAATTGGTAATATGGACTTCACATAGATACGTCATGATGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGTAAATTGGTAATATGGACTTCACATAGATACGTCATGATGAA  988

seq1  GGGATATTAAGCAGTATAGTGTCTATGACATTGCATGGTTCCTGAGAAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATTAAGCAGTATAGTGTCTATGACATTGCATGGTTCCTGAGAAGA  1038

seq1  CTCCAGTAAAGACGATGGACATTTGCTTAGTGAATTC  1086
      |||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTAAAGACGATGGACATTTGCTTAGTGAATTC  1075

seq1: chrX_111460438_111460766
seq2: B6Ng01-122O20.g_178_553 (reverse)

seq1  AGGAGCTAGAGAAAGTAACCAAGGAGGTAAAGGGATCTGCAACCCTATAG  50
      |||||||||||||||||||||||||| ||||||  | |||| |||  || 
seq2  AGGAGCTAGAGAAAGTAACCAAGGAGCTAAAGGTTTTTGCAGCCCCCTAA  50

seq1  GTGGAACAACAATATAAACTAACCAGTACCCCCCAGAGCTT---------  91
      ||||||||||||||||||||||||||||  |||||||||||         
seq2  GTGGAACAACAATATAAACTAACCAGTA-ACCCCAGAGCTTCTTGGGACT  99

seq1  -----------------------------------GTGTCTCTAGCTGCA  106
                                          || |||||||||||
seq2  AAACCACCAATCAAAGAAAACACACAGAGAGATACATGGCTCTAGCTGCA  149

seq1  TATATATCAGAAGATGGCCTAGTCGGCCATCAGTGGAAAGAGAGGCCCAT  156
      ||| || |  | ||||||||||| |  ||||| ||  ||||||| ||| |
seq2  TATGTAGCTTAGGATGGCCTAGTTGATCATCACTGAGAAGAGAGACCC-T  198

seq1  TGGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAACGCCAGGGCCAAG  206
      ||||| ||  ||  || |||||| ||||| |||| || || |||| || |
seq2  TGGTCCTGTGAAGGTTCTATGCCCCAGTATAGGGTAATGCTAGGGTCAGG  248

seq1  AAGTGGGAGTGGGAGGGTGGGGGAGTGGTTGTGGGAGCGTGTGGGGAAGT  256
      |  | |||||||| |||| |  |||  | ||| || | | | || |||| 
seq2  AGATAGGAGTGGGTGGGTTGCAGAGCAGGTGTTGGGGAG-GGGGAGAAGA  297

seq1  TTTGGGA---TAGCGTTGGAAA--TGTAAATGAAATAA-ATACCGAATTT  300
      |  | ||   | |    |||||   | ||| |  |||| ||    ||| |
seq2  TAGGAGATTTTTGGAGGGGAAACTAGGAAAGGGGATAACATCTGAAATGT  347

seq1  AAAAAAAGAAAATATCTAATTAAAAAAAA  329
      ||| |||||||||||||||||||||||||
seq2  AAATAAAGAAAATATCTAATTAAAAAAAA  376