BAC Information

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BAC

Clone NameB6Ng01-123A21
ChromosomeX (Build37)12 (Build37)
Map Location 72,231,526 - 72,232,07359,939,159 - 59,940,287
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437, EG667446, LOC669291
Downstream geneGab3, Dkc1, Mpp1, EG547412, 4930428E23Rik, EG667190, F8, LOC572559, LOC667218, Fundc2, Mtcp1, Brcc3, LOC667496, Vbp1, Rab39b, EG635243, Pls3, LOC635275, EG635295
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123A21.bB6Ng01-123A21.g
ACCDH926325DH926326
length8041,113
definitionDH926325|Mus musculus domesticus DNA, BAC clone: B6Ng01-123A21, 5' end.DH926326|Mus musculus domesticus DNA, BAC clone: B6Ng01-123A21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(72,231,526 - 72,232,073)(59,939,159 - 59,940,287)
sequence
gaattccagaccatcttggtctgtataaggtccgggtcagctaggactgc
acagtgagaaccttactcagaaagaaagaaaggaggtgaagggagggagc
gagggagggagaaaaaggaagaaagaaggagggaaggaaggaaaggagga
gggaaggaaaagaagaaaggaagagagagagtgagcgagcaagagagaga
gagagagagagagagagagagagagagagagagagagagagagagagaga
gaaattgaatttttcaatgtaaaatttccctgatgacttacttatgggct
ttaactctctatgacactggagatgtagtgacagataatgattgtttaat
cagataaatactcttaatgactattcatgtaaagattctctctggtcatg
tgtgtccttttggttcagggttacttcacacatgatgatattttctagtt
ccatccatttgcctgcaacattcatgatgttcttgtttttaatagttgaa
tattattccatggtgtaaatgaaccacattttctgtatccattcttcagt
ttgagggacatctgggttgtttcctggttctggatattataaataaggct
gctatgaacatagtggggtgttggaccccaggggcccaagtatagaaaac
gtgacctctggaaaacacagcttgatgacagatcgctgtaatgacaaatg
ggttttttattcagactcgtgtggggttactcaacctctcagggagagtc
aacccaaactgtcaaagtactgtcaaactttttatactcttttgaaaagg
gggg
gaattcttatcttctccagaaacagagtgtgtgcccagaggaggagagaa
aagatactctccagctacattcagatcctataattaacaacttttcacta
gcttgaaatttcatttaaagatgagcagtgtggctttgtttctgaacata
aagccattcctattgtagattccctaatgaaagcttctaaaattattctt
ttgaagatgtttcaaaaatacatcagatgttttctatttttaatttattt
cgttttgagtcaaatactgcagaatgagtacagtctaagggccttacatg
aaaccacactgtactcctcaccggacctcctaaccagtccttctgcaaag
ccaatgtaaacaaacggcactgtactatgtgcattgcctcctgaccaaaa
ctatgcccaggaggcataattctatgctaaatgtaaagccatccaggatc
ctgtcacagagttcacctggagccctgggctgtgcagctccactccctct
gtccacagattagcacagtataaactttatcttcttaagattggttaaag
agatgctatggaagaactacagcattcaggtttctcttgccaagctcagc
atttcaaaatagatgaagtacaggggagaatgataatttcatcatttaga
agatgagtacacatcaaaatataatttaaggtttctactacacatttaca
gagctgatctcaaatgctgattttttttttcctctgccatacctcatggg
tttactgacgaaggcatcattctatgtgatcctacaaaggctttcttcaa
aagaaactgaaatataggaagaagtgtgcctattgattaatgtgacagat
ggcagagtgacatttcaactcagctgtgattaatgtatgtacaactatcc
gtttaataggaaactctatagcatcaaatgaaatctgatcaaatcgtagt
gtcattgtgatgacctctcattattttttcacagccagaattattatcct
actgaatctggcatcagccatgcctaatggtgatgaaatatgaatagtat
ccctgaacaaatttttgtatctgaccatgtcttttctcaatcgaacgaac
tctgagcctggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_72231526_72232073
seq2: B6Ng01-123A21.b_297_847

seq1  ATTGAATTTTTCTATATAAAATTTCAATGATAACTTAGTTATGGTCTTTA  50
      |||||||||||| || |||||||||  |||| ||||| |||||| |||||
seq2  ATTGAATTTTTCAATGTAAAATTTCCCTGATGACTTACTTATGGGCTTTA  50

seq1  ACTCTCTATGACACTGTAGATGTAGTGACAGATAATGATTGTTTAGTCAG  100
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  ACTCTCTATGACACTGGAGATGTAGTGACAGATAATGATTGTTTAATCAG  100

seq1  ATAATTACTCTTAATGACTATTCATGTAAAGATTCTCTCTGGTCATGTGT  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATACTCTTAATGACTATTCATGTAAAGATTCTCTCTGGTCATGTGT  150

seq1  GTCCTTTTGGTTCAGGGTTACTTCACACATGATGATATTTTCTAGTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTTGGTTCAGGGTTACTTCACACATGATGATATTTTCTAGTTCCA  200

seq1  TCCATTTGCCTGCAACATTCATGATGTTCTTGTTTTTAATAGTTGAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTGCCTGCAACATTCATGATGTTCTTGTTTTTAATAGTTGAATAT  250

seq1  TATTCCATGGTGTAAATGAACCACATTTTCTGTATCCATTCTTCAG-TTG  299
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TATTCCATGGTGTAAATGAACCACATTTTCTGTATCCATTCTTCAGTTTG  300

seq1  AGGGACATCTGGGTTGTTTCCTGGTTCTGGATATTATAAATAAGGCTGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACATCTGGGTTGTTTCCTGGTTCTGGATATTATAAATAAGGCTGCT  350

seq1  ATGAACATAGTGGGGTGTTGGACCCCAGGGGCCCAAGTATAGAAAACGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATAGTGGGGTGTTGGACCCCAGGGGCCCAAGTATAGAAAACGTG  400

seq1  ACCTCTGG-AAACACAGCTTGATGACAGATCGCTGTAATGACAAATGG--  446
      |||||||| |||||||||||||||||||||||||||||||||||||||  
seq2  ACCTCTGGAAAACACAGCTTGATGACAGATCGCTGTAATGACAAATGGGT  450

seq1  TTTTTATTCAGACTCGTGTGGGGTTACTCAACCTCTCAGGGAGAGTCAAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTCAGACTCGTGTGGGGTTACTCAACCTCTCAGGGAGAGTCAAC  500

seq1  CCAAACTGTCAAAAGTACTGTCAAACATTTTATACTCTTTTGAAAAGGGG  546
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  CCAAACTGTC-AAAGTACTGTCAAACTTTTTATACTCTTTTGAAAAGGGG  549

seq1  GG  548
      ||
seq2  GG  551

seq1: chr12_59939159_59940287
seq2: B6Ng01-123A21.g_64_1176

seq1  GAATTCTTATCTTCTCCAGAAACAGAGTGTGTGCCCAGAGGAGGAGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATCTTCTCCAGAAACAGAGTGTGTGCCCAGAGGAGGAGAGAA  50

seq1  AAGATACTCTCCAGCTACATTCAGATCCTATAATTAACAACTTTTCACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACTCTCCAGCTACATTCAGATCCTATAATTAACAACTTTTCACTA  100

seq1  GCTTGAAATTTCATTTAAAGATGAGCAGTGTGGCTTTGTTTCTGAACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAATTTCATTTAAAGATGAGCAGTGTGGCTTTGTTTCTGAACATA  150

seq1  AAGCCATTCCTATTGTAGATTCCCTAATGAAAGCTTCTAAAATTATTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATTCCTATTGTAGATTCCCTAATGAAAGCTTCTAAAATTATTCTT  200

seq1  TTGAAGATGTTTCAAAAATACATCAGATGTTTTCTATTTTTAATTTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGATGTTTCAAAAATACATCAGATGTTTTCTATTTTTAATTTATTT  250

seq1  CGTTTTGAGTCAAATACTGCAGAATGAGTACAGTCTAAGGGCCTTACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTGAGTCAAATACTGCAGAATGAGTACAGTCTAAGGGCCTTACATG  300

seq1  AAACCACACTGTACTCCTCACCGGACCTCCTAACCAGTCCTTCTGCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACACTGTACTCCTCACCGGACCTCCTAACCAGTCCTTCTGCAAAG  350

seq1  CCAATGTAAACAAACGGCACTGTACTATGTGCATTGCCTCCTGACCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTAAACAAACGGCACTGTACTATGTGCATTGCCTCCTGACCAAAA  400

seq1  CTATGCCCAGGAGGCATAATTCTATGCTAAATGTAAAGCCATCCAGGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCCAGGAGGCATAATTCTATGCTAAATGTAAAGCCATCCAGGATC  450

seq1  CTGTCACAGAGTTCACCTGGAGCCCTGGGCTGTGCAGCTCCACTCCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACAGAGTTCACCTGGAGCCCTGGGCTGTGCAGCTCCACTCCCTCT  500

seq1  GTCCACAGATTAGCACAGTATAAACTTTATCTTCTTAAGATTGGTTAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACAGATTAGCACAGTATAAACTTTATCTTCTTAAGATTGGTTAAAG  550

seq1  AGATGCTATGGAAGAACTACAGCATTCAGGTTTCTCTTGCCAAGCTCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTATGGAAGAACTACAGCATTCAGGTTTCTCTTGCCAAGCTCAGC  600

seq1  ATTTCAAAATAGATGAAGTACAGGGGAGAATGATAATTTCATCATTTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAAATAGATGAAGTACAGGGGAGAATGATAATTTCATCATTTAGA  650

seq1  AGATGAGTACACATCAAAATATAATTTAAGGTTTCTACTACACATTTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGTACACATCAAAATATAATTTAAGGTTTCTACTACACATTTACA  700

seq1  GAGCTGATCTCAAATGCTGA-TTTTTTTTTCCTCTGCCATACCTCATGGG  749
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAGCTGATCTCAAATGCTGATTTTTTTTTTCCTCTGCCATACCTCATGGG  750

seq1  TTTACTGACGAAGGCATCATTCTATGTGATCCTACAAAGGCTTTCTTCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGACGAAGGCATCATTCTATGTGATCCTACAAAGGCTTTCTTCAA  800

seq1  AAGGAAACTGAAATATAGGAAGAAGTGTGCCTATTGATTAATGTGACAGA  849
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AA-GAAACTGAAATATAGGAAGAAGTGTGCCTATTGATTAATGTGACAGA  849

seq1  TGGCAGAGTGACATTTCAACTCAGCTGTGATTAATGTATGTACAACTATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAGTGACATTTCAACTCAGCTGTGATTAATGTATGTACAACTATC  899

seq1  CGTTTAATAGGAAAACTCTATAGCATCAAATGGAAATTCTGATCAAATCG  949
      ||||||||||| ||||||||||||||||||||  || |||||||||||||
seq2  CGTTTAATAGG-AAACTCTATAGCATCAAATG--AAATCTGATCAAATCG  946

seq1  TAGTGTCATTGTGATGACTCTTCATTATTTTTTCACAGCCCAGGAAATTA  999
      ||||||||||||||||||   ||||||||||||||||| ||||  |||||
seq2  TAGTGTCATTGTGATGACCTCTCATTATTTTTTCACAG-CCAG--AATTA  993

seq1  TTATCCTACTGGTATCTGAGCAATTCAGCCATGCCTAATGGTGATGAAAT  1049
      |||||||||| | ||||| |||  ||||||||||||||||||||||||||
seq2  TTATCCTACT-GAATCTG-GCA--TCAGCCATGCCTAATGGTGATGAAAT  1039

seq1  ATGGATAGATACCCCTGAACAAAATATTTGTATCTGACCATGTCCTTTCT  1099
      ||| |||| || |||||||| |||| |||||||||||||||||| |||||
seq2  ATGAATAG-TATCCCTGAAC-AAATTTTTGTATCTGACCATGTCTTTTCT  1087

seq1  CACTCAGAACAGACTCTCTGAGCCCTGGGA  1129
      || || ||||  |  ||||||| |||||||
seq2  CAATC-GAACGAA--CTCTGAG-CCTGGGA  1113