BAC Information

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BAC

Clone NameB6Ng01-123H05
ChromosomeX (Build37)7 (Build37)
Map Location 146,090,656 - 146,091,065124,543,908 - 124,544,550
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC434866, EG666868, EG624260, LOC434865, EG624310, Ott, LOC666888, LOC100039598, LOC100039890, LOC100039612, EG666923, EG624378, LOC100039934, LOC100039629, LOC382243
Downstream geneEG666961, EG666968, OTTMUSG00000018988, LOC100039651, EG624568, LOC382244, LOC100039669, EG666982, EG624631, EG546387, LOC333588, Tmem29, LOC100040101, Alas2, Apex2, Pfkfb1, Tro
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123H05.bB6Ng01-123H05.g
ACCDH926612DH926613
length333408
definitionDH926612|Mus musculus domesticus DNA, BAC clone: B6Ng01-123H05, 5' end.DH926613|Mus musculus domesticus DNA, BAC clone: B6Ng01-123H05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,090,656 - 146,091,065)(124,543,908 - 124,544,550)
sequence
ccagggtacatttcttcatgtcctgtacgtatatgcatgccatgtagact
tcacaggagaaacaggttctaacgagacagaaacagtctgagcatggtga
cagatgaataatcagcctctacattgggcttcatggcgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtacttgtatgtgtgaaggccagagtt
tgatatcaagtgtcttctacaatcgctctcactgaacctggagcttgcct
atttggatagactggttgcccaacaaattccagggatactacggtctcca
tctcagtgctggacaacagatgcctatataata
ttccctgtgcccttcgggctgtgatggagcatctaacctgcataagcctc
ctcagcagattgttttcttagtctccaccatcaaagaataatccctgggt
ttctgaaaactggacaagggaggggctgaggctgtagtcagagttgtcac
cccatctgagacccacacttcactgggcatgccagtagcctgtgtggtgg
gatggaaagtcagagaggcctggactcagtctggggaggacgaattgtgc
ctgagttcagaagaacttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtagtgaaaaaaaagcatgcgtgtaatttttataccatgccacaatgtct
ctgttcatctcagttggagcacacagtgcaatggagtgggtagtggtaaa
cactaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_146090656_146091065
seq2: B6Ng01-123H05.b_192_389 (reverse)

seq1  TATTATATAGGCATCTGGTATTAAACAGTGTTTGAACAGGAAAATTGCCT  50
      ||||||||||||||||| | |  | || ||                    
seq2  TATTATATAGGCATCTGTTGTCCAGCACTG--------------------  30

seq1  ACAGGGTAAGAGCACATGCAAAAGAAGAATGAGGACCTGGAACCCATACA  100
      | | ||  ||| |          | || ||     |||||||        
seq2  AGATGG--AGACC----------GTAGTAT----CCCTGGAA--------  56

seq1  AAAAGCAGAGCTTGGTCTTGGTCAAGGGTACATCTGTAATCCCAGTGTTC  150
                 ||  | |||| |||                ||||| |  
seq2  -----------TT--TGTTGGGCAA----------------CCAGTCT--  75

seq1  TTAGAATGGAGATAGGATCTGACTAGCTGTGACTTAGCTCGAAGTACTGT  200
           ||  | |||||                   ||||| | || | ||
seq2  -----ATCCAAATAGG-----------------CAAGCTCCAGGTTCAGT  103

seq1  AAGACGCCCTATCTCAAGGGAGGAATTTGGAAAGTAAGAGCAGGACACCT  250
       ||| ||               || | | |||           ||||| |
seq2  GAGA-GC---------------GATTGTAGAA-----------GACACTT  126

seq1  GATGACACCTTCACTCAACCTCCTTGAAGCTCATAAGTATGTGCTCTCAC  300
      |||           |||| |||                 || ||  ||||
seq2  GAT----------ATCAAACTC-----------------TG-GCCTTCAC  148

seq1  CCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  350
       |||                                              
seq2  ACAT----------------------------------------------  152

seq1  TCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACAC  400
                    |||   ||||||||||||||||||||||||||||||
seq2  --------------ACAAGTACACACACACACACACACACACACACACAC  188

seq1  ACACACACGC  410
      ||||||||||
seq2  ACACACACGC  198

seq1: chr7_124543908_124544550
seq2: B6Ng01-123H05.g_66_479

seq1  GAATTCTTCCCTGTGCCCTTCGGGCTGTGATGGAGCATCTAACCTGCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCTGTGCCCTTCGGGCTGTGATGGAGCATCTAACCTGCATA  50

seq1  AGCCTCCTCAGCAGATTGTTTTCTTAGTCTCCACCATCAAAGAATAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCTCAGCAGATTGTTTTCTTAGTCTCCACCATCAAAGAATAATCC  100

seq1  CTGGGTTTCTGAAAACTGGACAAGGGAGGGGCTGAGGCTGTAGTCAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTCTGAAAACTGGACAAGGGAGGGGCTGAGGCTGTAGTCAGAGT  150

seq1  TGTCACCCCATCTGAGACCCACACTTCACTGGGCATGCCAGTAGCCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCCCATCTGAGACCCACACTTCACTGGGCATGCCAGTAGCCTGTG  200

seq1  TGGTGGGATGGAAAGTCAGAGAGGCCTGGACTCAGTCTGGGGAGGACGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGATGGAAAGTCAGAGAGGCCTGGACTCAGTCTGGGGAGGACGAA  250

seq1  TTGTGCCTGAGTTCAGAAGAACTTCTGTGTGTGTGTGTGTGTGTGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCTGAGTTCAGAAGAACTTCTGTGTGTGTGTGTGTGTGTGTGTGT  300

seq1  GTGTGTGTAGTGAAAAAAAAGCATGCGTGTAATTTTTATACCATGCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTAGTGAAAAAAAAGCATGCGTGTAATTTTTATACCATGCCACA  350

seq1  ATGTCTCTGTTCATCTCAGTTGGAGCACACAGTGCAATGGAGTGGGTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCTGTTCATCTCAGTTGGAGCACACAGTGCAATGGAGTGGGTAGT  400

seq1  GGTAAACACAAGGTCTTTGAAATTGGGCTGCCTAAGTTCAAGTCCTGGGT  450
      ||||||||| ||||                                    
seq2  GGTAAACACTAGGT------------------------------------  414

seq1  CTGCCACTTATCACCTGTGTGACTGTAGAGACGTTATGCACGGGACCTCA  500
                                                        
seq2  --------------------------------------------------  414

seq1  GCTGCTTCATCCGGAAACTGGGTGCATGAGACCTATCTACTGCAGGGGGT  550
                                                        
seq2  --------------------------------------------------  414

seq1  TCTGTGGAGAGACAGAGTGAGTGGACGTTGTATTTTATTGAGCAACGTGC  600
                                                        
seq2  --------------------------------------------------  414

seq1  CCAGACATGTGTCACATATTATAAAGTGCTTATTATTATAGGT  643
                                                 
seq2  -------------------------------------------  414