BAC Information

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BAC

Clone NameB6Ng01-123J16
ChromosomeX (Build37)6 (Build37)
Map Location 111,045,776 - 111,048,89693,669,032 - 93,670,146
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039112, Chm, EG664918, Dach2
Downstream geneLOC237016, EG664945, EG634881, LOC100039201, Klhl4, Gm1866, EG546361, EG237009, 4930524E20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123J16.bB6Ng01-123J16.g
ACCDH926724DH926725
length1,1751,085
definitionDH926724|Mus musculus domesticus DNA, BAC clone: B6Ng01-123J16, 5' end.DH926725|Mus musculus domesticus DNA, BAC clone: B6Ng01-123J16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(111,045,776 - 111,048,896)(93,669,032 - 93,670,146)
sequence
gaattccatgatgctctgagacacccatgcatttgctttaggaatttgtc
aaacggcagtccagtcgtccccaatgcctattactaatctatatgggaaa
ggaaagtagccagactggaggtgagtgtttataaagtcctgtgaagtgcc
agctcccaagtaccaggaacctttggtttggtctcgaattcagaaattat
ttttctcagtctctttcctttcttctttcgctcccttctttttttcctct
caagctttttgagatagggtttcacatagcccaagctgacccgttttagt
tagagtttctattgctgtgaagagacaccatgaccatggcaactcttata
aaggaaacatttcattggggctggcttactgttcagaggcttagtccatt
attgtcatggcaggaagcatagtggcatgcaggcagacatggtgctggag
aaggaactgagagttttacatccagatccataggcagcaggaaagagtga
gacactaggcctgccttggacatctgaaatctcaaagcccaccccttgtg
acgtccttcctccaacaaggccacatttcctagtagtgctacttcctgtg
agcctatgggggccatttactttcaaaccaccacatggccccaacttact
gtttagctaaggatgcccttgaacttttgatctttttcctacttctgcct
ctggagaactggggttccaggtgtgtgcggtcatggctgttttatgtggt
gctggtgaacgacctcagggcttcatgtatactaggcagcttctctccca
cgtgagctgcaccccagccctcttcatcatctcaggagttttctcaacag
gccaggaagaacgacgctgctacaggatccttctgcacacattattcagt
cctgtttcttctttctccatatatctcccttgttatatctccctgtttat
atatctccttgtttatatctccctgttttatatctccccgaaccctgggg
cctctcactctttatactctcagttccatccacgcacagcagcacgccac
ctcaccagcacgcagcttcagctatcaaggcagcagggcatctccaccaa
ctgattcacctgtatctgtacctgcccacactcagagtttggtcttattg
aggatcaggtcaagtcaatgactta
gaattccaacaccatgttctttcaccttctttggctaactgacatcatct
gtgaaaaagtgattaggatcagctgatttcgatcaggggaaaaaaaccat
catttttgctgagttaattaacatataaaaagatttagggaaggattact
tgcagttcagactgagtggaacaatttttatatgactttaatttaaaaga
attgggcgcttttattggtcaataggctgtccttaacggatctgtatcaa
attacattaatgagtcactgcatatgcttcaaactacatactgttgcact
gttatgttcacattttctcttaattaatacacacttaatagaataagaca
agtttcactaccatcaatttttattaatctctattgatcagcattgcact
gacccacctccacaaaacttcttgtagagtctccaactggcttagtcaga
ctcatatctgggcaatctctaactgtctcttacgccactgtagggtaaag
gacattttcattctttgccacggaggaacgatctcacattccctacagtg
ccttcacaaagacacacactgcagcatcctgatatacaggaaaactggaa
actaccagaacttctatatagcctgcagggtaaccaaccacaaagcattc
cacacgagttaaaaggaatgagctctctctacaggtaacaatgccactgc
ttccaaaacataacgctgggagtgtggctagcagagagacatgtaactgg
agagaggtggcaacacagacacacagtttttgccttctgtgaatgttccc
aaattgatatcagggacattattcattactacttagaattctgaaatcaa
ggaggtagtagatagcaattttaaataacttaatagtgataagactctac
aatatcccaaatatatataatatcatcagcattaaagaaacagagctacc
actaaagcatgtctggtgtgtctctagaagctgctactgatatgctagag
gcccagctaactcaggagatgcattttgcacaatagactctaaagagggc
ttatttctcttgctagtgagtactgaacttcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_111045776_111048896
seq2: B6Ng01-123J16.b_893_1225 (reverse)

seq1  TAAGTCATATGACTTGCACCTGACTTCCTCATATAAGACACAAACATCTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GAGTGCTGCGCAGGTGTACCAGGATATAGGTGAATCCAATTTGGTGGAGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGCCCCTGCTGCCCTGATTAGCTGAAGCCTCGTGACTGGCGAGGGGGC  150
                                                        
seq2  --------------------------------------------------  0

seq1  GTGGCCTGCGGTGCGTGGATGGGAACTGAGAGTATATAAGAGTGAGAGGC  200
                                                        
seq2  --------------------------------------------------  0

seq1  CCGGGTTAGAGGGAGGATTATTATTCGAGAGAGGATTACTATTAGGGGGG  250
                                                        
seq2  --------------------------------------------------  0

seq1  AGATATAAACAGGGGAGATATAAACAGGGGAGATATAAAAACAAGGGAGA  300
                                                        
seq2  --------------------------------------------------  0

seq1  TATAAAAACAAGGGAGATATAAAAACAAGGGAGATATAAAAACAAGGGAG  350
                                                        
seq2  --------------------------------------------------  0

seq1  ATATAAAAACAAGGGAGATATAAACAAGAGAGATAAAAACAAGGGAGATA  400
                                                        
seq2  --------------------------------------------------  0

seq1  TAAAAACAAGGGAGATATAAAAACAAGGGAGATATAAACAAGGGGGGCGA  450
                                                        
seq2  --------------------------------------------------  0

seq1  TATATAAACAAGGGAGATATAAACAAGGGAGATATAGAGGAAGAAGAAAC  500
                                                        
seq2  --------------------------------------------------  0

seq1  AGGACTGAATAAATGTGTGCAGAAGGATCCTGTAGCAGCGTCGTTCTTCC  550
                                                        
seq2  --------------------------------------------------  0

seq1  TGGCCAGTTGAGCGCACGCAAGAAGTGGTGCCGAAACCCGGGACAAGAAG  600
                                                        
seq2  --------------------------------------------------  0

seq1  ACCCGGGACGAGAAGACCTGGGACGAGAAGATCTGAGACGAGAAAACCCG  650
                                                        
seq2  --------------------------------------------------  0

seq1  GGAAAAGAAACATCTTCAGGCAAGAGCGAAGACCCCCTGCTACAGGGAGG  700
                                                        
seq2  --------------------------------------------------  0

seq1  ATTCAGAACTGCATCACGGGGAAGGAGTGGTTAATAAAGGTTCCCGTAAA  750
                                                        
seq2  --------------------------------------------------  0

seq1  ACAGACTGTTGAGAAGGATCCAGCGTGGATTCAGAACTCTTCAGCTGGGG  800
                                                        
seq2  --------------------------------------------------  0

seq1  AACGGTACTGATGAAGAGAAAGAAGAAAGATGAGGACGGAATAAACTGCT  850
                                                        
seq2  --------------------------------------------------  0

seq1  GTTAGAAGGACTGGTGGTCGCGTCGTTCTTGCTGGTCGAGAGCGGGCGCG  900
                                                        
seq2  --------------------------------------------------  0

seq1  ACAATTGGTGGCCCGTACGGGGAACCGACTCCCCCACCGAGTTCAGAACT  950
                                                        
seq2  --------------------------------------------------  0

seq1  TTCAGCAGTCAGTGGTTGCTGGCAGGGTAAGTTCACGGTGAGTGAAACTT  1000
                                                        
seq2  --------------------------------------------------  0

seq1  GCGACCCCAGGAGTTTGGGAAGGACCTCGGTTAAAATAGAGGGGAATATA  1050
                                                        
seq2  --------------------------------------------------  0

seq1  AAGTTGCCAGGAAGCAGGTACAAGGTAACTAAAGGTTCATGGTTTTGGGA  1100
                                                        
seq2  --------------------------------------------------  0

seq1  CAAGTTAAGGTTCCCGGTTTGGGGACAAGTTAAGGAACTATGATAACCTC  1150
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGTAGTGATCAATAGATCCTCGCTGTGTAGTTATGCTTTTTTCTCCCA  1200
                                                        
seq2  --------------------------------------------------  0

seq1  TTGACCCTTTGTGGGTAGGTCTGATAGTTTTGGTCTTGTTTGTTCTGATA  1250
                                                        
seq2  --------------------------------------------------  0

seq1  TATGGACTCTGTTACTGTTTGAAACTGTGTGTAGAGGCAGTCAAGACAGG  1300
                                                        
seq2  --------------------------------------------------  0

seq1  TCAGAAAATCCTTATAGAGCAACAAGAAAGTATGTCGGAAAAGGAGAAGG  1350
                                                        
seq2  --------------------------------------------------  0

seq1  GCTTAAAAAGAAAAAGGAAAAAGAAAGAAGACACAGTAAAATCAGGTGAA  1400
                                                        
seq2  --------------------------------------------------  0

seq1  CAGAAAGGACGAAACAAAAGAGCCGAGGCGGAGGAGGAAGGCGAATTAGC  1450
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTGTGCCTCCTCCCTATGCCTCCTCAGCATCCACCTGTAGGTGGACCT  1500
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGTCTGGAGATTTGGAGAGGATCGAGTAGATCAGGTGTTGACGTGGGC  1550
                                                        
seq2  --------------------------------------------------  0

seq1  GAGAGGGTCTGTTTGTGTGTTTCCACAGGACCAGACGGAACCTCTTTGGG  1600
                                                        
seq2  --------------------------------------------------  0

seq1  TGCCGGAGAGATTGGTGAGACGCTGCAAGAATGAGGCTCCTGATCCAGTT  1650
                                                        
seq2  --------------------------------------------------  0

seq1  GCCCCTGTGGATGTGGTGGATGGTCCCACAAACACAAACAATGGAGCCGA  1700
                                                        
seq2  --------------------------------------------------  0

seq1  GATGGGAGATCCTTTCGGTATTCCAGAAGCTGATACCAGCTCGACATGAT  1750
                                                        
seq2  --------------------------------------------------  0

seq1  ATTCTTTCCACGCTTTTTGATCCCTGAATTCCCCTTAAAGAGATAGCCCC  1800
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGGCCATCTATCCCTTGCTTCAGGGAAGATGAGCGGGGATGAGAGCCC  1850
                                                        
seq2  --------------------------------------------------  0

seq1  TGGGATGTATGCTTGTTATAGTGTGTGTGTTTTTTGTGTTTGGCACATGT  1900
                                                        
seq2  --------------------------------------------------  0

seq1  GTTAGGTGCAGAGTGTGCGGCCCGCACTTTCGCCATGGTAGCGTAGGCTT  1950
                                                        
seq2  --------------------------------------------------  0

seq1  TTGCTGCAGTGGAGACGGGACAATCTCCTCAGATTCGGTTTGCCGCTCTA  2000
                                                        
seq2  --------------------------------------------------  0

seq1  AAAGAAATTATGCTGCGTTATGCCGTGGGGTGCGAGGCTAAGCACTGCAC  2050
                                                        
seq2  --------------------------------------------------  0

seq1  AGAGGATAGCTTGCTGTTGGCATCCTGTGGAAGGCACGTCTGATTGCATG  2100
                                                        
seq2  --------------------------------------------------  0

seq1  AAGGTTCAGTGTCCTAGTTCCCTTCCCCCAGGAAAAATGACACGGGAGCT  2150
                                                        
seq2  --------------------------------------------------  0

seq1  GGCCAAGACCTCTCTGGGTGATGAGCCTAAGGGATGGTTTTGTGTAGGGC  2200
                                                        
seq2  --------------------------------------------------  0

seq1  CCCTATGCTTGCACACTGGGGATCAGACCTCTACCTTCACCCATGAGGCT  2250
                                                        
seq2  --------------------------------------------------  0

seq1  TGCTTGCAGCAATTAAGATCTGGCCATAGGTTAATTAACATCCTGGCCTT  2300
                                                        
seq2  --------------------------------------------------  0

seq1  TTGATGCACCTGCCGCAAGCAAAACACAATCTCCCCAGGTGTGGCTTGGC  2350
                                                        
seq2  --------------------------------------------------  0

seq1  ATGATAGAGAGGTAGTCAGTGATAAGACTCCCTGGGCATGTCACCAACCT  2400
                                                        
seq2  --------------------------------------------------  0

seq1  AAGACAGGGATCAAACCAATGCTGTTTGTCACCCAAAGACGGGTAAGGGG  2450
                                                        
seq2  --------------------------------------------------  0

seq1  CATGGCTGCGAGGGGCTATCTACAGACATTCTCTCTGCCAAAAAAGAAAA  2500
                                                        
seq2  --------------------------------------------------  0

seq1  AAGGGGGAATTGTGGGGAGCGGGTGTGGCGGTAGTCCCAAAGGCGCCAGG  2550
                                                        
seq2  --------------------------------------------------  0

seq1  GACTGTAGCTAAGTCATATGACTTGCACCTGACTTCCTCATATAAGACAC  2600
               |||||||| ||||||| ||||||  |||||| ||||||| |
seq2  ---------TAAGTCAT-TGACTTG-ACCTGA--TCCTCA-ATAAGAC-C  35

seq1  AAACATCTTGAGTGCTGCGCAGGTGTACCAGGATATAGGTGAATCCAATT  2650
      |||| || |||||| || ||||||  |    |||| |||||||||  | |
seq2  AAAC-TC-TGAGTG-TGGGCAGGTACA----GATACAGGTGAATC--AGT  76

seq1  TGGTGGAGATTTGCCCCTGCTGCCCTGATTAGCTGAAGCCTCGTGACTGG  2700
      ||||||||||    |||||||||| ||| ||||||||||  |||| ||||
seq2  TGGTGGAGAT---GCCCTGCTGCCTTGA-TAGCTGAAGCTGCGTG-CTGG  121

seq1  CGAGGGGGCGTGGCCTGCGGTGCGTGGATGGGAACTGAGAGTATATAAGA  2750
       |||| ||||||  |||| |||||||||| ||||||||||||||| ||||
seq2  TGAGGTGGCGTG--CTGCTGTGCGTGGAT-GGAACTGAGAGTATA-AAGA  167

seq1  GTGAGAGGCCCGGGTTAGAGGGAGGATTATTATTCGAGAGAGGATTACTA  2800
      |||||||||||       ||||          ||||              
seq2  GTGAGAGGCCC------CAGGG----------TTCG--------------  187

seq1  TTAGGGGGGAGATATAAACAGGGGAGATATAAACAGGGGAGATATAAAAA  2850
                                                        
seq2  --------------------------------------------------  187

seq1  CAAGGGAGATATAAAAACAAGGGAGATATAAAAACAAGGGAGATATAAAA  2900
                                                        
seq2  --------------------------------------------------  187

seq1  ACAAGGGAGATATAAAAACAAGGGAGATATAAACAAGAGAGATAAAAACA  2950
          |||||||||||||   ||||||||||||||||              
seq2  ----GGGAGATATAAAA--CAGGGAGATATAAACAA--------------  217

seq1  AGGGAGATATAAAAACAAGGGAGATATAAAAACAAGGGAGATATAAACAA  3000
                         ||||||||| |||| ||||||||||      
seq2  -------------------GGAGATATATAAAC-AGGGAGATAT------  241

seq1  GGGGGGCGATATATAAACAAGGGAGATATAAACAAGGGAGATATAGAGGA  3050
                     ||||||||||||             |||| ||| |
seq2  ---------------AACAAGGGAGAT-------------ATATGGAGAA  263

seq1  AGAAGAAACAGGACTGAATAAATGTGTGCAGAAGGATCCTGTAGCAGCGT  3100
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGAAGAAACAGGACTGAAT-AATGTGTGCAGAAGGATCCTGTAGCAGCGT  312

seq1  CGTTCTTCCTGGCCAGTTGAG  3121
      |||||||||||||| ||||||
seq2  CGTTCTTCCTGGCCTGTTGAG  333

seq1: chr6_93669032_93670146
seq2: B6Ng01-123J16.g_66_1150

seq1  GAATTCCAACACCATGTTCTTTCACCTTCTTTGGCTAACTGACATCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACACCATGTTCTTTCACCTTCTTTGGCTAACTGACATCATCT  50

seq1  GTGAAAAAGTGATTAGGATCAGCTGATTTCGATCAGGGGAAAAAAACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAAGTGATTAGGATCAGCTGATTTCGATCAGGGGAAAAAAACCAT  100

seq1  CATTTTTGCTGAGTTAATTAACATATAAAAAGATTTAGGGAAGGATTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTGCTGAGTTAATTAACATATAAAAAGATTTAGGGAAGGATTACT  150

seq1  TGCAGTTCAGACTGAGTGGAACAATTTTTATATGACTTTAATTTAAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTCAGACTGAGTGGAACAATTTTTATATGACTTTAATTTAAAAGA  200

seq1  ATTGGGCGCTTTTATTGGTCAATAGGCTGTCCTTAACGGATCTGTATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGCGCTTTTATTGGTCAATAGGCTGTCCTTAACGGATCTGTATCAA  250

seq1  ATTACATTAATGAGTCACTGCATATGCTTCAAACTACATACTGTTGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATTAATGAGTCACTGCATATGCTTCAAACTACATACTGTTGCACT  300

seq1  GTTATGTTCACATTTTCTCTTAATTAATACACACTTAATAGAATAAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTTCACATTTTCTCTTAATTAATACACACTTAATAGAATAAGACA  350

seq1  AGTTTCACTACCATCAATTTTTATTAATCTCTATTGATCAGCATTGCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCACTACCATCAATTTTTATTAATCTCTATTGATCAGCATTGCACT  400

seq1  GACCCACCTCCACAAAACTTCTTGTAGAGTCTCCAACTGGCTTAGTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACCTCCACAAAACTTCTTGTAGAGTCTCCAACTGGCTTAGTCAGA  450

seq1  CTCATATCTGGGCAATCTCTAACTGTCTCTTACGCCACTGTAGGGTAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATCTGGGCAATCTCTAACTGTCTCTTACGCCACTGTAGGGTAAAG  500

seq1  GACATTTTCATTCTTTGCCACGGAGGAACGATCTCACATTCCCTACAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTCATTCTTTGCCACGGAGGAACGATCTCACATTCCCTACAGTG  550

seq1  CCTTCACAAAGACACACACTGCAGCATCCTGATATACAGGAAAACTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACAAAGACACACACTGCAGCATCCTGATATACAGGAAAACTGGAA  600

seq1  ACTACCAGAACTTCTATATAGCCTGCAGGGTAACCAACCACAAAGCATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCAGAACTTCTATATAGCCTGCAGGGTAACCAACCACAAAGCATTC  650

seq1  CACACGAGTTAAAAGGAATGAGCTCTCTCTACAGGTAACAATGCCACTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGAGTTAAAAGGAATGAGCTCTCTCTACAGGTAACAATGCCACTGC  700

seq1  TTCCAAAACATAACGCT-GGAGTGTGGCTAGCAGAGAGACATGTAACTGG  749
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTCCAAAACATAACGCTGGGAGTGTGGCTAGCAGAGAGACATGTAACTGG  750

seq1  AGAGAGGTGGCAACACAGACACACAGTTTTTGCCTTCTGTGAATGTTCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGTGGCAACACAGACACACAGTTTTTGCCTTCTGTGAATGTTCCC  800

seq1  AAATTGATATCAGGGACATTATTCATTACTACTTAGAATTCTGATATCAA  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAATTGATATCAGGGACATTATTCATTACTACTTAGAATTCTGAAATCAA  850

seq1  AGAGGTAGTAAGATAGCAATTTTAAAATAAACTTAATTAGTGAATAGAAC  899
       |||||||| ||||||||||||||||   ||||||| ||||| |||  ||
seq2  GGAGGTAGT-AGATAGCAATTTTAAA--TAACTTAA-TAGTG-ATAAGAC  895

seq1  TCCTAC-ATATCCCAAATATAATATAATATCAATCAGCATTAAAGAAACA  948
      | |||| ||||||||||||| |||||||||| ||||||||||||||||||
seq2  T-CTACAATATCCCAAATAT-ATATAATATC-ATCAGCATTAAAGAAACA  942

seq1  GAGCTAACCAACTAAAGCATGTCT-GTGTGTCCTCTAGGAAGGCTGCCTA  997
      ||||||  | |||||||||||||| |||||| ||||||  | |||| |||
seq2  GAGCTA--CCACTAAAGCATGTCTGGTGTGT-CTCTAG--AAGCTG-CTA  986

seq1  CTGATATGCTAGAAGGCCCCAGCTAACCTCAGAGGAATTGCATTTTGCAA  1047
      |||||||||||||  | ||||||||| |||  ||||  |||||||||| |
seq2  CTGATATGCTAGA--GGCCCAGCTAA-CTC--AGGAGATGCATTTTGC-A  1030

seq1  CAAATAAGAACCTCTTTATAAGAAGGGCTTTATTTTTCTCTGCTAGTGAG  1097
      |||   |||  |||    |||  ||||| |||||| ||| ||||||||||
seq2  CAA--TAGA--CTC----TAAAGAGGGC-TTATTTCTCT-TGCTAGTGAG  1070

seq1  TTACTGAAACTTTCATTT  1115
       |||||||   |||||||
seq2  -TACTGAA--CTTCATTT  1085