BAC Information

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BAC

Clone NameB6Ng01-123M07
ChromosomeX (Build37)
Map Location 141,612,387 - 141,711,318
singlet/doubletdoublet
Overlap geneLOC623591
Upstream geneLOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436, Zcchc16, LOC666655
Downstream geneLhfpl1, Amot, EG434860, LOC100039313, LOC623697, LOC623731, LOC237096, LOC100039558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123M07.bB6Ng01-123M07.g
ACCDH926846DH926847
length1,121911
definitionDH926846|Mus musculus domesticus DNA, BAC clone: B6Ng01-123M07, 5' end.DH926847|Mus musculus domesticus DNA, BAC clone: B6Ng01-123M07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,710,179 - 141,711,318)(141,612,387 - 141,613,297)
sequence
gaattctttgtttagctctgtaccccaaatggggttatttgattttctgg
agtctatcttcttgctttctttgtatatattggatattagtcccctatca
gatttagggttggtaaagatcccaatctgttgtcctttttgtcttattga
cagtgtcttttgccttacggaagctttgcaattttatgaggtcgcatttg
ttgattctagatcttacagcacaagccatttctgttctgttcaggaattt
ttcacctgtgcccatatctttgaggcttttcctccactttctcctctata
aattttagtgtctctggtttaagtggcgttctttggtcgacttagacttg
accttagtacaaggagataagaatggatcaattagcattcttctacctga
taacttccagttgtgccagcaccatttgttgaaaatgctgtcttttttcc
actggatggttttacttggctgcttttccaggctaccttatttctatttt
tcctcctctgactatgcttaacttcttctcagagaggactgatgatcaca
cccagggaactgtttgtgccaatcatgcacactctcattgagcctgtgtt
cagcatcctcatactgaactattccaatgcacagagttctttttgatata
caaaatatcttcaggagatttcatctacatgcttattaggaagtgattta
aacacattacgttaatctgtgctaaaagatgtcagcaattttctctcttc
ctccttcaactagtcattcctgaaaataggttgggagtagatatcatagg
ctgtgaaataaaatgcccagtgtctgatatgaattatatagttttaagat
gttgatgactcagtcctgttccatggtccagtttgcttcctgtcaatgtg
taaacacactgacaaagccatgtcaggagaaagggtttgtttagcttaat
attctcatacagtcatcattgagcaagccagtacaggaactcaagtaagg
caattattggagaccaaactgaagtatatatcataaaagaatgctgctta
ctgatagtctcccataactgtttggtggtttgaaagatggcttcccgact
catgtgactgaatgcctggcc
gaattcatagcacaagaataatgtatctatctcacatcagagatatatgt
tgagatttgagtcagggtaggtaggtaggtttacaactgcatacaacttc
agaatggtcatttattttccttcaatacaagtaaaatctctgtggattcc
tggttatctactccagtgattttcagaaacattgatcaaaggagttatca
atccagaacatgtaggcacatgtcatttctcctttgactaagactcaaag
aacaaagcagaaaacagggtgggaagaggaatcactaatattaaggagtc
tttgtcatagaactattacaaataagaaggcaatccatgtcacagaattt
atcattgacagtgattgcaaaagatttgctctctttctagtaaagaacat
cgaagttaagcaatctgcctcaatgtctgcatgatccttttggatagcag
aacccagttgggggcttaacatggacttccactgttagtgttttggacat
ttgtcaggaacaatagaatcaaacagccttggagaaggtaaatatgtttt
attttatgttcataggctctgtctgccctcatgtacactacatgaatatc
gttttcactgctgtaataacactcataaaaattcattgcacagagaaagt
aggaaaatgatggaccattacacataggcattcactaatctgaggtcaaa
actcataaaccatgagtaaatattgtggtacagtagtgcaatagtctaag
cagtctctaggtattaattcccgaaaagttaatgtgttaccctatataag
aattgggtattttctgaatcaatgaccaaaagacattactgtttctatca
tggagtctatcctaagaaccagaggtagaagataaagtggctcttttcgt
gtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_141710179_141711318
seq2: B6Ng01-123M07.b_48_1168 (reverse)

seq1  GGCCAAGCATTCAGTCACATGAGTCTGTGGAAGCCATTCCTTTTCAAACC  50
      ||||| |||||||||||||||||||   |||||||||    |||||||||
seq2  GGCCAGGCATTCAGTCACATGAGTC--GGGAAGCCAT---CTTTCAAACC  45

seq1  ACCACAACAAGTTATGGAGAACTATCCAGTAAGCAGCATTCTTTTATGAT  100
      |||| ||| ||||||||   ||||| ||||||||||||||||||||||||
seq2  ACCA-AAC-AGTTATGGGAGACTAT-CAGTAAGCAGCATTCTTTTATGAT  92

seq1  ATATACTTCAGTTTGTGTCTCCAATTAATTGCCTTACTTGAGTTCCTGTA  150
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  ATATACTTCAGTTTG-GTCTCCAA-TAATTGCCTTACTTGAGTTCCTGTA  140

seq1  CTGGCTTGCCTCAATGATGGACTGTTATGAGAATATTTAAGCTAAACAAA  200
      |||||||| ||||||||| ||||| |||||||||| ||||||||||||||
seq2  CTGGCTTG-CTCAATGAT-GACTG-TATGAGAATA-TTAAGCTAAACAAA  186

seq1  CCCTTTCCTCCCTGACATGGCTTTTGTCAGTGTGTTTAACACATTGACAG  250
      |||||||   ||||||||||| ||||||||||||||| ||||||||||||
seq2  CCCTTTC--TCCTGACATGGC-TTTGTCAGTGTGTTT-ACACATTGACAG  232

seq1  GAAGCAAACTGGACCATGGAACAGGACCTGAGTCATCAACATCTTAAAAC  300
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAAGCAAACTGGACCATGGAACAGGA-CTGAGTCATCAACATCTTAAAAC  281

seq1  TATATAATTCATATCAGACACTGGGCATTTTATTTCACAGCCTATGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATTCATATCAGACACTGGGCATTTTATTTCACAGCCTATGATAT  331

seq1  CTACTCCCAACCTATTTTCAGGAATGACTAGTTGAAGGAGGAAGAGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCCCAACCTATTTTCAGGAATGACTAGTTGAAGGAGGAAGAGAGAA  381

seq1  AATTGCTGACATCTTTTAGCACAGATTAACGTAATGTGTTTAAATCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTGACATCTTTTAGCACAGATTAACGTAATGTGTTTAAATCACTT  431

seq1  CCTAATAAGCATGTAGATGAAATCTCCTGAAGATATTTTGTATATCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATAAGCATGTAGATGAAATCTCCTGAAGATATTTTGTATATCAAAA  481

seq1  AGAACTCTGTGCATTGGAATAGTTCAGTATGAGGATGCTGAACACAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTGTGCATTGGAATAGTTCAGTATGAGGATGCTGAACACAGGCT  531

seq1  CAATGAGAGTGTGCATGATTGGCACAAACAGTTCCCTGGGTGTGATCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGAGTGTGCATGATTGGCACAAACAGTTCCCTGGGTGTGATCATC  581

seq1  AGTCCTCTCTGAGAAGAAGTTAAGCATAGTCAGAGGAGGAAAAATAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCTCTGAGAAGAAGTTAAGCATAGTCAGAGGAGGAAAAATAGAAA  631

seq1  TAAGGTAGCCTGGAAAAGCAGCCAAGTAAAACCATCCAGTGGAAAAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAGCCTGGAAAAGCAGCCAAGTAAAACCATCCAGTGGAAAAAAGA  681

seq1  CAGCATTTTCAACAAATGGTGCTGGCACAACTGGAAGTTATCAGGTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTTCAACAAATGGTGCTGGCACAACTGGAAGTTATCAGGTAGAA  731

seq1  GAATGCTAATTGATCCATTCTTATCTCCTTGTACTAAGGTCAAGTCTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTAATTGATCCATTCTTATCTCCTTGTACTAAGGTCAAGTCTAAG  781

seq1  TCGACCAAAGAACGCCACTTAAACCAGAGACACTAAAATTTATAGAGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACCAAAGAACGCCACTTAAACCAGAGACACTAAAATTTATAGAGGAG  831

seq1  AAAGTGGAGGAAAAGCCTCAAAGATATGGGCACAGGTGAAAAATTCCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGAGGAAAAGCCTCAAAGATATGGGCACAGGTGAAAAATTCCTGA  881

seq1  ACAGAACAGAAATGGCTTGTGCTGTAAGATCTAGAATCAACAAATGCGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACAGAAATGGCTTGTGCTGTAAGATCTAGAATCAACAAATGCGAC  931

seq1  CTCATAAAATTGCAAAGCTTCCGTAAGGCAAAAGACACTGTCAATAAGAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAAAATTGCAAAGCTTCCGTAAGGCAAAAGACACTGTCAATAAGAC  981

seq1  AAAAAGGACAACAGATTGGGATCTTTACCAACCCTAAATCTGATAGGGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGACAACAGATTGGGATCTTTACCAACCCTAAATCTGATAGGGGA  1031

seq1  CTAATATCCAATATATACAAAGAAAGCAAGAAGATAGACTCCAGAAAATC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATCCAATATATACAAAGAAAGCAAGAAGATAGACTCCAGAAAATC  1081

seq1  AAATAACCCCATTTGGGGTACAGAGCTAAACAAAGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACCCCATTTGGGGTACAGAGCTAAACAAAGAATTC  1121

seq1: chrX_141612387_141613297
seq2: B6Ng01-123M07.g_70_980

seq1  GAATTCATAGCACAAGAATAATGTATCTATCTCACATCAGAGATATATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGCACAAGAATAATGTATCTATCTCACATCAGAGATATATGT  50

seq1  TGAGATTTGAGTCAGGGTAGGTAGGTAGGTTTACAACTGCATACAACTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTGAGTCAGGGTAGGTAGGTAGGTTTACAACTGCATACAACTTC  100

seq1  AGAATGGTCATTTATTTTCCTTCAATACAAGTAAAATCTCTGTGGATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGTCATTTATTTTCCTTCAATACAAGTAAAATCTCTGTGGATTCC  150

seq1  TGGTTATCTACTCCAGTGATTTTCAGAAACATTGATCAAAGGAGTTATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATCTACTCCAGTGATTTTCAGAAACATTGATCAAAGGAGTTATCA  200

seq1  ATCCAGAACATGTAGGCACATGTCATTTCTCCTTTGACTAAGACTCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAACATGTAGGCACATGTCATTTCTCCTTTGACTAAGACTCAAAG  250

seq1  AACAAAGCAGAAAACAGGGTGGGAAGAGGAATCACTAATATTAAGGAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGCAGAAAACAGGGTGGGAAGAGGAATCACTAATATTAAGGAGTC  300

seq1  TTTGTCATAGAACTATTACAAATAAGAAGGCAATCCATGTCACAGAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCATAGAACTATTACAAATAAGAAGGCAATCCATGTCACAGAATTT  350

seq1  ATCATTGACAGTGATTGCAAAAGATTTGCTCTCTTTCTAGTAAAGAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGACAGTGATTGCAAAAGATTTGCTCTCTTTCTAGTAAAGAACAT  400

seq1  CGAAGTTAAGCAATCTGCCTCAATGTCTGCATGATCCTTTTGGATAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGTTAAGCAATCTGCCTCAATGTCTGCATGATCCTTTTGGATAGCAG  450

seq1  AACCCAGTTGGGGGCTTAACATGGACTTCCACTGTTAGTGTTTTGGACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGTTGGGGGCTTAACATGGACTTCCACTGTTAGTGTTTTGGACAT  500

seq1  TTGTCAGGAACAATAGAATCAAACAGCCTTGGAGAAGGTAAATATGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGGAACAATAGAATCAAACAGCCTTGGAGAAGGTAAATATGTTTT  550

seq1  ATTTTATGTTCATAGGCTCTGTCTGCCCTCATGTACACTACATGAATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGTTCATAGGCTCTGTCTGCCCTCATGTACACTACATGAATATC  600

seq1  GTTTTCACTGCTGTAATAACACTCATAAAAATTCATTGCACAGAGAAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCACTGCTGTAATAACACTCATAAAAATTCATTGCACAGAGAAAGT  650

seq1  AGGAAAATGATGGACCATTACACATAGGCATTCACTAATCTGAGGTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATGATGGACCATTACACATAGGCATTCACTAATCTGAGGTCAAA  700

seq1  ACTCATAAACCATGAGTAAATATTGTGGTACAGTAGTGCAATAGTCTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATAAACCATGAGTAAATATTGTGGTACAGTAGTGCAATAGTCTAAG  750

seq1  CAGTCTCTAGGTATTAATTCCCGAAAAGTTAATGTGTTACCCTATATAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTAGGTATTAATTCCCGAAAAGTTAATGTGTTACCCTATATAAG  800

seq1  AATTGGGTATTTTCTGAATCAATGACCAAAAGACATTACTGTTTCTATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGTATTTTCTGAATCAATGACCAAAAGACATTACTGTTTCTATCA  850

seq1  TGGAGTCTATCCTAAGAACCAGAGGTAGAAGATAAAGTGGCTCTTTTCGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCTATCCTAAGAACCAGAGGTAGAAGATAAAGTGGCTCTTTTCGT  900

seq1  GTGTGTGTGTG  911
      |||||||||||
seq2  GTGTGTGTGTG  911