BAC Information

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BAC

Clone NameB6Ng01-123M20
ChromosomeX (Build37)
Map Location 99,790,517 - 99,975,319
singlet/doubletdoublet
Overlap genePhka1, LOC668331, LOC100042516, EG668339, Dmrtc1b, EG668343, LOC100043105, EG668349
Upstream geneTaf1, Ogt, LOC620865, LOC668291, Cxcr3, LOC632454, LOC668302, EG212753, 8030474K03Rik, LOC668308, LOC100042465, H3f3a-ps1, EG621083, Rgag4, LOC100042480, LOC331476, Pin4, LOC670921, Ercc6l, LOC668318, Rps4x, LOC100043080, Cited1, Hdac8
Downstream geneEG382233, Dmrtc1c, EG668360, LOC668357, 1700031F05Rik, EG668369, Dmrtc1a, 1700011M02Rik, 1700018G05Rik, EG331480, EG668382, LOC668387, EG245545, LOC100042610, EG621205, Nap1l2, LOC668217, 4930519F16Rik, LOC100042615, Cdx4, LOC671052, Chic1, Tsx, Tsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2, EG621381
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123M20.bB6Ng01-123M20.g
ACCDH926872DH926873
length520453
definitionDH926872|Mus musculus domesticus DNA, BAC clone: B6Ng01-123M20, 5' end.DH926873|Mus musculus domesticus DNA, BAC clone: B6Ng01-123M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,790,517 - 99,791,036)(99,974,864 - 99,975,319)
sequence
gaattctcaaaatatgttaaatcctgggcatatatccagaagatgtccca
accggtaagaaggacgcatgctccactatgttcatagcagccttatttat
aatagccagaagctggaaagaacccagatgcccctcaacagaggaatgga
tacaaaaaaatgtggtacatttacacaatggagtaccactcaactattaa
aaagaatgaatttatgaaattcctaagcaaatgaatggacctggagggca
tcatcctgagtgaggtaacacaatcacaaaagaattcaaatgatatgtac
tcactgataagtggatattagcccagaaacttagtatacccgagatataa
gatacaatttgcaaaacacatgtaactgaagaagaatgaagaccaaagtg
tggacactttgccccttcttagaattagaaacaatcacccacggaagggg
ttacagagacaaagtttggagctgagacaaaagaatggaccatctagaga
ctgccatatccagagatcca
tcctctgagcttatgactggaaggcacccacgctccaaatctatacacac
aaatgctctgaagtcatcaccacgccctctgtcccttttagaccattctt
cttatgcatgacctcccaggtctccccagttgacagtgaactgagaatgt
tgacctgggctgggagtcatgaccacttccattccttctatttgacatga
tcttgcactcaggtaagacctggccaccttggaggcctcagtctacttgg
gtgttgttgttgttgttgttgtggcgatggtggtagtttttttttctttt
ttgttttggggtcagacactggtcatttgctgttgagcaactggtgctaa
ctgaagattctcctagcagcccctggaatactatctcttaagtcagagtg
aggaagttaagtgtctgagcctagatagctcagtttcaaaagtttcacag
gtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_99790517_99791036
seq2: B6Ng01-123M20.b_52_571

seq1  GAATTCTCAAAATATGTTAAATCCTGGGCATATATCCAGAAGATGTCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAATATGTTAAATCCTGGGCATATATCCAGAAGATGTCCCA  50

seq1  ACCGGTAAGAAGGACGCATGCTCCACTATGTTCATAGCAGCCTTATTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGTAAGAAGGACGCATGCTCCACTATGTTCATAGCAGCCTTATTTAT  100

seq1  AATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGA  150

seq1  TACAAAAAAATGTGGTACATTTACACAATGGAGTACCACTCAACTATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAAAATGTGGTACATTTACACAATGGAGTACCACTCAACTATTAA  200

seq1  AAAGAATGAATTTATGAAATTCCTAAGCAAATGAATGGACCTGGAGGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGAATTTATGAAATTCCTAAGCAAATGAATGGACCTGGAGGGCA  250

seq1  TCATCCTGAGTGAGGTAACACAATCACAAAAGAATTCAAATGATATGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTGAGTGAGGTAACACAATCACAAAAGAATTCAAATGATATGTAC  300

seq1  TCACTGATAAGTGGATATTAGCCCAGAAACTTAGTATACCCGAGATATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGATAAGTGGATATTAGCCCAGAAACTTAGTATACCCGAGATATAA  350

seq1  GATACAATTTGCAAAACACATGTAACTGAAGAAGAATGAAGACCAAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAATTTGCAAAACACATGTAACTGAAGAAGAATGAAGACCAAAGTG  400

seq1  TGGACACTTTGCCCCTTCTTAGAATTAGAAACAATCACCCACGGAAGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACTTTGCCCCTTCTTAGAATTAGAAACAATCACCCACGGAAGGGG  450

seq1  TTACAGAGACAAAGTTTGGAGCTGAGACAAAAGAATGGACCATCTAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAGACAAAGTTTGGAGCTGAGACAAAAGAATGGACCATCTAGAGA  500

seq1  CTGCCATATCCAGAGATCCA  520
      ||||||||||||||||||||
seq2  CTGCCATATCCAGAGATCCA  520

seq1: chrX_99974864_99975319
seq2: B6Ng01-123M20.g_69_526 (reverse)

seq1  ACCTGTGAA--CTTTGAAACTGAGCTATCTAGGCTCAGACACTTAACTTC  48
      |||||||||   ||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGAAACTTTTGAAACTGAGCTATCTAGGCTCAGACACTTAACTTC  50

seq1  CTCACTCTGACTTAAGAGATGGTATTCCAGGGGCTGCTAGGAGAATCTTC  98
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTCACTCTGACTTAAGAGATAGTATTCCAGGGGCTGCTAGGAGAATCTTC  100

seq1  AGTTAGCACCAGTTGCTCAACAGCAAATGACCAGTGTCTGACCCCAAAAC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGCACCAGTTGCTCAACAGCAAATGACCAGTGTCTGACCCCAAAAC  150

seq1  AAAAAAGAAAAAAAAACTACCACCATCGCCACAACAACAACAACAACAAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAAAAAAACTACCACCATCGCCACAACAACAACAACAACAAC  200

seq1  ACCCAAGTAGACTGAGGCCTCCAAGGTGGCCAGGTCTTACCTGAGTGCAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGTAGACTGAGGCCTCCAAGGTGGCCAGGTCTTACCTGAGTGCAA  250

seq1  GATCATGTCAAATAGAAGGAATGGAAGTGGTCATGACTCCCAGCCCAGGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGTCAAATAGAAGGAATGGAAGTGGTCATGACTCCCAGCCCAGGT  300

seq1  CAACATTCTCAGTTCACTGTCAACTGGGGAGACCTGGGAGGTCATGCATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTCTCAGTTCACTGTCAACTGGGGAGACCTGGGAGGTCATGCATA  350

seq1  AGAAGAATGGTCTAAAAGGGACAGAGGGCGTGGTGATGACTTCAGAGCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATGGTCTAAAAGGGACAGAGGGCGTGGTGATGACTTCAGAGCAT  400

seq1  TTGTGTGTATAGATTTGGAGCGTGGGTGCCTTCCAGTCATAAGCTCAGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTATAGATTTGGAGCGTGGGTGCCTTCCAGTCATAAGCTCAGAG  450

seq1  GAGAATTC  456
      ||||||||
seq2  GAGAATTC  458